BAC Information

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BAC

Clone NameB6Ng01-039H13
Chromosome5 (Build37)
Map Location 108,048,326 - 108,215,095
singlet/doubletdoublet
Overlap geneAW060207, Gfi1, LOC100042473, Evi5
Upstream geneZfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn
Downstream gene1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039H13.bB6Ng01-039H13.g
ACCDH866735DH866736
length1,1271,105
definitionDH866735|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H13, 5' end.DH866736|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,213,952 - 108,215,095)(108,048,326 - 108,049,448)
sequence
gaattcccagaagtactcctttctctgcatctagactgccgtgattgcag
gtatgagataccatgcctggcttgtaaattagttacttaaattatacaca
aatctgtatggactttttcaaaagattgccacctgtcttagttactgttc
tagtgctctgaggagacaccatgaccaaagcatctcataagagaacatta
gttgaggggttagtcaatggtcattatggtgggaagaaaacaggtgtagt
gctagagcagtagctgagaactttacatcctgatccacaaacagcaaccc
cagagagaagagacagggagaatgagtagtcctgacagaggcttttgaaa
cctcaaagccttcccgcagcagtgcaccttcaacaaagtcacacctctca
ttccccccaaacagttccactaacttgcattcagacatatgaacctatgg
ggtcattctcattcaaaccactgcaccatctttctaaacacaaaacaact
atggtctttacctaggtgtggtggctcatgcctgtagcctcagcagcctc
tgtgtgtgtatgtgtgtgtgtgtcacacgtgtgagtttgcaggtgtgtgt
tctcatgcacatatatgtagaagctagaactgcgcatggtgtggaatctt
ctattgctcttagtatatattgccttgagacccactgttttgctagactg
actggccagtgagctccctgatgtggccacaggcttgtggacactgggat
ttacactgatgtcctcatcttgtagagtaaactttttaacccactgagcc
aaattagtttttttgatattgaaatacttactaaaactaagaaactcata
ttctgcatgttttgcttaagtgaaatctacatgttacatcatattatgaa
aagtgaagaaagatgcatcaaatattcttaagtatttctctaacttgcta
tgccaggcccttagtaatcatgttttcatttccttaaatttttccttttt
taatttattacattcaatgtatcctctttccaattccccccctcccagaa
gcccctattctatctccctcttctctatgaggggtgggacccccaaccca
ccccatctacctccagcctcctttccc
gaattcttaatgtgattgaaactgaatctgaaaatcaaaatgtgcaacca
tgggacagctgttatcttattgtttgcattcatgagcgctcagatttaaa
tatctctcattgaactatgttgatgtgccaacttcatttttcgttatgac
ttttgtattttttcattacatgaaaatttctgtataatggtcagccagaa
caagaaaatattaactattttttcaagcaaaactcaaaattgttgagtag
gatagagtctttagagggttatggtgtttgctatactgctttaagaattg
taaaatgttaggaaaaggcaaaggaaagctggaaaagaattctgtcaaat
gtgtattaaatatggagaaatgaaagccttctgaaatgtcagtgtgagag
tataaaatgtaaggctgtttctgagggacagaaattcttaccgtgggaat
tcccagcgtccctgtgggaagctttgtctccattgacatggttttggtgg
tctctccttgtacagcggcagttctggagaagtagtacagttcttccgag
atgccgtgacagcagcagatgttgacggttccggcgccttggaggcgcag
tgtgaccctgcttcttccagctcttggagtgagcgagccagtgatgagga
ggagcaaggctttgtttcttctcttctaccaggaaacagaccaaaggcag
tggatacaagaccgcagccgcacacaaaaagcagcatcatgagaaagaag
gctgctcagaacgtggactccaaggagggagagcagaccgtgtcagaggt
taccgagcagctggataattgcagattagatagtcaggagaaagtggcca
cttgtaaacgtcctttaaagaaagaaagtactcagatttcttcacctggc
cctttgtgtgacagatttaacacttcagccatttctgaacataaacacgg
tgtatcacaagttacgctgtagcatagcagaagagtgctgagcatttcag
agcaaatttgccaagtcaatccaggtctgggtcagcctctgttgtacacg
tgcgtcctgagttgcgagcaaattacctcagtcctcggacctctgactga
atgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108213952_108215095
seq2: B6Ng01-039H13.b_48_1174 (reverse)

seq1  GGGAAAGTGAGGGCTGGGAGGTAGGAGTGGGGGTGGGGTGGGGGTGCACA  50
      ||||||| || |||| ||||||   ||  |||||||| ||||||| |   
seq2  GGGAAAG-GA-GGCT-GGAGGT---AGATGGGGTGGGTTGGGGGTCCCAC  44

seq1  CCCTCATAGAAGAAGGAGGGAGATAGGATAGGGGGCTTCTGGGAGGGGGG  100
      ||||||||| |||| ||||||||||| ||| |||||||||||||||||||
seq2  CCCTCATAG-AGAA-GAGGGAGATAGAATA-GGGGCTTCTGGGAGGGGGG  91

seq1  AATTGGGAAAGAGGATAACATTTGAAATGTAAATAAAATTAAAAAAAGGA  150
       | | ||||||||||| |||||   ||||| ||||||  | |||||||||
seq2  GAATTGGAAAGAGGAT-ACATT--GAATGT-AATAAA--TTAAAAAAGGA  135

seq1  AAAAATTTTAAGGAAATGAAAACATGATTACTAAGGGCCTGGCATAGCAA  200
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAA--TTTAAGGAAATGAAAACATGATTACTAAGGGCCTGGCATAGCAA  183

seq1  GTTAGAGAAATACTTAAGAATATTTGATGCATCTTTCTTCACTTTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAAATACTTAAGAATATTTGATGCATCTTTCTTCACTTTTCATA  233

seq1  ATATGATGTAACATGTAGATTTCACTTAAGCAAAACATGCAGAATATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGTAACATGTAGATTTCACTTAAGCAAAACATGCAGAATATGAG  283

seq1  TTTCTTAGTTTTAGTAAGTATTTCAATATCAAAAAAACTAATTTGGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTTTTAGTAAGTATTTCAATATCAAAAAAACTAATTTGGCTCA  333

seq1  GTGGGTTAAAAAGTTTACTCTACAAGATGAGGACATCAGTGTAAATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTAAAAAGTTTACTCTACAAGATGAGGACATCAGTGTAAATCCCA  383

seq1  GTGTCCACAAGCCTGTGGCCACATCAGGGAGCTCACTGGCCAGTCAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCACAAGCCTGTGGCCACATCAGGGAGCTCACTGGCCAGTCAGTCT  433

seq1  AGCAAAACAGTGGGTCTCAAGGCAATATATACTAAGAGCAATAGAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACAGTGGGTCTCAAGGCAATATATACTAAGAGCAATAGAAGATT  483

seq1  CCACACCATGCGCAGTTCTAGCTTCTACATATATGTGCATGAGAACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCATGCGCAGTTCTAGCTTCTACATATATGTGCATGAGAACACAC  533

seq1  ACCTGCAAACTCACACGTGTGACACACACACACATACACACACAGAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAACTCACACGTGTGACACACACACACATACACACACAGAGGCT  583

seq1  GCTGAGGCTACAGGCATGAGCCACCACACCTAGGTAAAGACCATAGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCTACAGGCATGAGCCACCACACCTAGGTAAAGACCATAGTTGT  633

seq1  TTTGTGTTTAGAAAGATGGTGCAGTGGTTTGAATGAGAATGACCCCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTAGAAAGATGGTGCAGTGGTTTGAATGAGAATGACCCCATAG  683

seq1  GTTCATATGTCTGAATGCAAGTTAGTGGAACTGTTTGGGGGGAATGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATGTCTGAATGCAAGTTAGTGGAACTGTTTGGGGGGAATGAGAG  733

seq1  GTGTGACTTTGTTGAAGGTGCACTGCTGCGGGAAGGCTTTGAGGTTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTTTGTTGAAGGTGCACTGCTGCGGGAAGGCTTTGAGGTTTCAA  783

seq1  AAGCCTCTGTCAGGACTACTCATTCTCCCTGTCTCTTCTCTCTGGGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTGTCAGGACTACTCATTCTCCCTGTCTCTTCTCTCTGGGGTTG  833

seq1  CTGTTTGTGGATCAGGATGTAAAGTTCTCAGCTACTGCTCTAGCACTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTGGATCAGGATGTAAAGTTCTCAGCTACTGCTCTAGCACTACA  883

seq1  CCTGTTTTCTTCCCACCATAATGACCATTGACTAACCCCTCAACTAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCTTCCCACCATAATGACCATTGACTAACCCCTCAACTAATGT  933

seq1  TCTCTTATGAGATGCTTTGGTCATGGTGTCTCCTCAGAGCACTAGAACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATGAGATGCTTTGGTCATGGTGTCTCCTCAGAGCACTAGAACAG  983

seq1  TAACTAAGACAGGTGGCAATCTTTTGAAAAAGTCCATACAGATTTGTGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGACAGGTGGCAATCTTTTGAAAAAGTCCATACAGATTTGTGTA  1033

seq1  TAATTTAAGTAACTAATTTACAAGCCAGGCATGGTATCTCATACCTGCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAGTAACTAATTTACAAGCCAGGCATGGTATCTCATACCTGCAA  1083

seq1  TCACGGCAGTCTAGATGCAGAGAAAGGAGTACTTCTGGGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGCAGTCTAGATGCAGAGAAAGGAGTACTTCTGGGAATTC  1127

seq1: chr5_108048326_108049448
seq2: B6Ng01-039H13.g_66_1170

seq1  GAATTCTTAATGTGATTGAAACTGAATCTGAAAATCAAAATGTGCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATGTGATTGAAACTGAATCTGAAAATCAAAATGTGCAACCA  50

seq1  TGGGACAGCTGTTATCTTATTGTTTGCATTCATGAGCGCTCAGATTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGCTGTTATCTTATTGTTTGCATTCATGAGCGCTCAGATTTAAA  100

seq1  TATCTCTCATTGAACTATGTTGATGTGCCAACTTCATTTTTCGTTATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCATTGAACTATGTTGATGTGCCAACTTCATTTTTCGTTATGAC  150

seq1  TTTTGTATTTTTTCATTACATGAAAATTTCTGTATAATGGTCAGCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTTTTTCATTACATGAAAATTTCTGTATAATGGTCAGCCAGAA  200

seq1  CAAGAAAATATTAACTATTTTTTCAAGCAAAACTCAAAATTGTTGAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATATTAACTATTTTTTCAAGCAAAACTCAAAATTGTTGAGTAG  250

seq1  GATAGAGTCTTTAGAGGGTTATGGTGTTTGCTATACTGCTTTAAGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGTCTTTAGAGGGTTATGGTGTTTGCTATACTGCTTTAAGAATTG  300

seq1  TAAAATGTTAGGAAAAGGCAAAGGAAAGCTGGAAAAGAATTCTGTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTAGGAAAAGGCAAAGGAAAGCTGGAAAAGAATTCTGTCAAAT  350

seq1  GTGTATTAAATATGGAGAAATGAAAGCCTTCTGAAATGTCAGTGTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTAAATATGGAGAAATGAAAGCCTTCTGAAATGTCAGTGTGAGAG  400

seq1  TATAAAATGTAAGGCTGTTTCTGAGGGACAGAAATTCTTACCGTGGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGTAAGGCTGTTTCTGAGGGACAGAAATTCTTACCGTGGGAAT  450

seq1  TCCCAGCGTCCCTGTGGGAAGCTTTGTCTCCATTGACATGGTTTTGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCGTCCCTGTGGGAAGCTTTGTCTCCATTGACATGGTTTTGGTGG  500

seq1  TCTCTCCTTGTACAGCGGCAGTTCTGGAGAAGTAGTACAGTTCTTCCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTGTACAGCGGCAGTTCTGGAGAAGTAGTACAGTTCTTCCGAG  550

seq1  ATGCCGTGACAGCAGCAGATGTTGACGGTTCCGGCGCCTTGGAGGCGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGTGACAGCAGCAGATGTTGACGGTTCCGGCGCCTTGGAGGCGCAG  600

seq1  TGTGACCCTGCTTCTTCCAGCTCTTGGAGTGAGCGAGCCAGTGATGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCTGCTTCTTCCAGCTCTTGGAGTGAGCGAGCCAGTGATGAGGA  650

seq1  GGAGCAAGGCTTTGTTTCTTCTCTTCTACCAGGAAACAGACCAAAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGGCTTTGTTTCTTCTCTTCTACCAGGAAACAGACCAAAGGCAG  700

seq1  TGGATACAAGACCGCAGCCGCACACAAAAAGCAGCATCATGAGAAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACAAGACCGCAGCCGCACACAAAAAGCAGCATCATGAGAAAGAAG  750

seq1  GCTGCTCAGAACGTGGACTCCAAGGAGGGAGAGCAGACCGTGTCAGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCAGAACGTGGACTCCAAGGAGGGAGAGCAGACCGTGTCAGAGGT  800

seq1  TACCGAGCAGCTGGATAATTGCAGATTAGATAGTCAGGAGAAAGTGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAGCAGCTGGATAATTGCAGATTAGATAGTCAGGAGAAAGTGGCCA  850

seq1  CTTGTAAACGTCCTTTAAAGAAAGAAAGTACTCAGATTTCTTCACCTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAACGTCCTTTAAAGAAAGAAAGTACTCAGATTTCTTCACCTGGC  900

seq1  CCTTTGTGTGACAGATTTAACACTTCAGCCATTTCTGAACATAAACACGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTGACAGATTTAACACTTCAGCCATTTCTGAACATAAACACGG  950

seq1  TGTATCACAAGTTACGCTTGTAGGCATAAGCAAGAAGAGTGCTGAGCATT  1000
      ||||||||||||||||| |||| |||| ||| ||||||||||||||||||
seq2  TGTATCACAAGTTACGC-TGTA-GCAT-AGC-AGAAGAGTGCTGAGCATT  996

seq1  TCAGGAGCAAATTTGCCAAGTCAAATCCAGGTTCTGGGTCAGCCTCTGGT  1050
      ||| |||||||||||||||||| |||||||| ||||||||||||||||  
seq2  TCA-GAGCAAATTTGCCAAGTC-AATCCAGG-TCTGGGTCAGCCTCTG--  1041

seq1  TTGGTACACGTGCGTCCTGAGGTTGCGAAGGCAAATTTACTCCGAGTTCT  1100
       | ||||||||||||||||| |||||||  |||||||  |||  ||| | 
seq2  -TTGTACACGTGCGTCCTGA-GTTGCGA--GCAAATTACCTC--AGTCC-  1084

seq1  GTCGGACACTCTGACTGAATGGA  1123
       |||||| |||||||||||||||
seq2  -TCGGAC-CTCTGACTGAATGGA  1105