BAC Information

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BAC

Clone NameB6Ng01-039H20
ChromosomeY (Build37)5 (Build37)
Map Location 1,870,346 - 1,870,43755,231,599 - 55,232,790
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039H20.bB6Ng01-039H20.g
ACCDH866749DH866750
length5001,180
definitionDH866749|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H20, 5' end.DH866750|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,437)(55,231,599 - 55,232,790)
sequence
gaattcacacaatatgtactcactgataagtggatattagcccaaaacct
aggatacccaagatataagatacaatttcctaaacacatgaaactcaaga
aaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaac
aaaacacccttggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccttatccagggatccaccccataatca
acatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacccagatgtagctatctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgcccacagtcagctaatggatggattacagggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatctgcaacccta
taggtggatcaacattatgaactaaccagtaccccggagctcttgactct

gaattctcataagcaaagattaagcaaaacaccagaacacccatagaaga
gaaaaatagaaacccattaaaataaaaatgatgtcagactggaaccattt
tcttttttcctttttctttttctttttctttttctttttcttttttttgg
agggaaccattttcttttgactaaattcaaagtgcagaatatatggaact
aaaaataaataaataaataaataaataaataaataaataattaaaatgtt
ataatactctatgcttattgaactgggatacagagctaataatacataat
aataataataataattttattttcactttttaaaaaaatgtgagtttgtt
agagattctccagtaaatcacaatttttgtgggaaaaaaaaatcaagaaa
ccaaaggagatttataaaattagccctataaggagattggtgatgtaaga
gcttaagaaaatggtgtgaatcccacctctacccagctacacatagcata
agtgacagagaggagggaaacaatcctgaaggcatgtggggaggaaagga
aggaatccatagagtttataataaatatataatgacagtatagcaactgc
acagtatttacatctcagagcagttctagtgagcacatgcaaagcaccac
agctgtgtctgcattaaatggcttaatgaacgtctgttaatataaacatt
atttgcctgctttccaatgtgaagcagaaaatagaaggtacacataggca
acttaatgccttttatgcaaaactacatgtaactgggaaattttgtctgc
cttttattgtcccataaacttaacttatatctttatttctgttcctttaa
acatctgtacaaagtttaagactaaaataagaagttttatttttaaaata
atttatgtaatcagctggaagaaatgaacatttttttacacaacataaag
agagatttgacggatataaatatgaatcaagaaaactaatgctagcaaga
aacagagaagtcaatggaaacgtctgttttattttgatggtgacaataaa
atgttaaccaggaacttgatagaggcccaaagaatatgaggaaacatcaa
aattacattcagtagttctttaatacttattgattgaagtttacatttgt
ttagtcaaggactcagactaatggttaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870437
seq2: B6Ng01-039H20.b_454_545

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCT  92
       ||||||||||||||||||| |||||| ||||||||||||||
seq2  TCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCT  92

seq1: chr5_55231599_55232790
seq2: B6Ng01-039H20.g_69_1248

seq1  GAATTCTCATAAGCAAAGATTAAGCAAAACACCAGAACACCCATAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAAGCAAAGATTAAGCAAAACACCAGAACACCCATAGAAGA  50

seq1  GAAAAATAGAAACCCATTAAAATAAAAATGATGTCAGACTGGAACCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAGAAACCCATTAAAATAAAAATGATGTCAGACTGGAACCATTT  100

seq1  TCTTTTTTCCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTGG  150

seq1  AGGGAACCATTTTCTTTTGACTAAATTCAAAGTGCAGAATATATGGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCATTTTCTTTTGACTAAATTCAAAGTGCAGAATATATGGAACT  200

seq1  AAAAATAAATAAATAAATAAATAAATAAATAAATAAATAATTAAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAATAAATAAATAAATAAATAAATAATTAAAATGTT  250

seq1  ATAATACTCTATGCTTATTGAACTGGGATACAGAGCTAATAATACATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTCTATGCTTATTGAACTGGGATACAGAGCTAATAATACATAAT  300

seq1  AATAATAATAATAATTTTATTTTCACTTTTTAAAAAAATGTGAGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATTTTATTTTCACTTTTTAAAAAAATGTGAGTTTGTT  350

seq1  AGAGATTCTCCAGTAAATCACAATTTTTGTGGGAAAAAAAAATCAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTCCAGTAAATCACAATTTTTGTGGGAAAAAAAAATCAAGAAA  400

seq1  CCAAAGGAGATTTATAAAATTAGCCCTATAAGGAGATTGGTGATGTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAGATTTATAAAATTAGCCCTATAAGGAGATTGGTGATGTAAGA  450

seq1  GCTTAAGAAAATGGTGTGAATCCCACCTCTACCCAGCTACACATAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGAAAATGGTGTGAATCCCACCTCTACCCAGCTACACATAGCATA  500

seq1  AGTGACAGAGAGGAGGGAAACAATCCTGAAGGCATGTGGGGAGGAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGAGAGGAGGGAAACAATCCTGAAGGCATGTGGGGAGGAAAGGA  550

seq1  AGGAATCCATAGAGTTTATAATAAATATATAATGACAGTATAGCAACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCCATAGAGTTTATAATAAATATATAATGACAGTATAGCAACTGC  600

seq1  ACAGTATTTACATCTCAGAGCAGTTCTAGTGAGCACATGCAAAGCACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTACATCTCAGAGCAGTTCTAGTGAGCACATGCAAAGCACCAC  650

seq1  AGCTGTGTCTGCATTAAATGGCTTAATGAACGTCTGTTAATATAAACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTCTGCATTAAATGGCTTAATGAACGTCTGTTAATATAAACATT  700

seq1  ATTTGCCTGCTTTCCAATGTGAAGCAGAAAATAGAAGGTACACATAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTGCTTTCCAATGTGAAGCAGAAAATAGAAGGTACACATAGGCA  750

seq1  ACTTAATGCCTTTTATGCAAAACTACATGTAACTGGGAAATTTTGTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGCCTTTTATGCAAAACTACATGTAACTGGGAAATTTTGTCTGC  800

seq1  CTTTTATTGTCCCATAAACTTAACTTATATCTTTATTTCTGTTCCTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGTCCCATAAACTTAACTTATATCTTTATTTCTGTTCCTTTAA  850

seq1  ACATCTGTACAAAGTTTAAGACTAAAATAAGAAGTTTTATTTTTAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTACAAAGTTTAAGACTAAAATAAGAAGTTTTATTTTTAAAATA  900

seq1  ATTTATGTAATCAGCTGGAAGAAATGAACATTTTTTTACACAACATAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTAATCAGCTGGAAGAAATGAACATTTTTTTACACAACATAAAG  950

seq1  AGAGATTTGACGGATATAAATATGAATCAAGAAAACTAATGCTAGCAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTGACGGATATAAATATGAATCAAGAAAACTAATGCTAGCAAGA  1000

seq1  AACAGAGAAAGTCAATGGAAACGTCTGTTTTATTCTGATCGTGGACAATT  1050
      ||||||| |||||||||||||||||||||||||| |||| || ||||| |
seq2  AACAGAG-AAGTCAATGGAAACGTCTGTTTTATTTTGATGGT-GACAA-T  1047

seq1  AAAATGTTAACCAGGAACATGAATAGAGGCCCAGAGAATAAGGAGGGAAA  1100
      |||||||||||||||||| || ||||||||||| |||||| |   |||||
seq2  AAAATGTTAACCAGGAACTTG-ATAGAGGCCCAAAGAATATG--AGGAAA  1094

seq1  CATCAAATATTTACATTCAGTAGTTCTTTTAATACATATTGATTGAATGT  1150
      ||||||  | |||||||||||||||| |||||||| ||||||||||| ||
seq2  CATCAA--AATTACATTCAGTAGTTC-TTTAATACTTATTGATTGAA-GT  1140

seq1  CTACTTTGTTTTAGTC-AGGACTCAAGGTACTAATGTTTAAAT  1192
       ||| ||  ||||||| ||||||||    ||||||| ||||||
seq2  TTACATTTGTTTAGTCAAGGACTCA---GACTAATGGTTAAAT  1180