BAC Information

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BAC

Clone NameB6Ng01-039I04
Chromosome5 (Build37)
Map Location 134,317,353 - 134,457,346
singlet/doubletdoublet
Overlap geneLOC666038, LOC100039750
Upstream geneLOC100039731
Downstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I04.bB6Ng01-039I04.g
ACCDH866764DH866765
length1,083404
definitionDH866764|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I04, 5' end.DH866765|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,317,353 - 134,318,440)(134,456,937 - 134,457,346)
sequence
gaattccacggggagcttttccatagacgacacacacgtttgtcgcttct
catcctcatgattcgcctttctcttctctgccaaagctcagggccgttgg
accagcttactcttactgccttcctgctcgctgagtttaaagtgggtgta
ggtgaggataccgaagagcgtgcataggatgccgagtccctggtttaccg
acaggggatccttaaatagaatgtatcctccacagagagtggtgcagaac
ttgaagtgtccgaacatgttgtaggtgactggtgacgtgttcccaatgat
ccagtaaatcgataagttcaccatgaaagcgattattccagacagcagta
ccataagcaaagcagaaactgaccagggaccaaatattcctccctctgca
aacactggctcgaagaagggcacagccaccagcagcatggcagaagacat
gggggcctggtagtaaagtagctgcatggagttcacctgcagttcgtgct
gcttggctccgacccactgagctgctgtctcctctgctctcgtcacctcc
tcagttacgctttcttctcatgtctgttgtctctatacttgtagtctcta
aaccttgggttacagcttcaaaatttacaaagtctacagcgtgagctgta
ttctgacggagaatctcttctggtaccagaaggtttggatggctatgatc
accggcgtggtcatggccttggccagctgataggtgcctatggtgttgtt
ctgcagagaaaggttggtgaagaccacaaagccacagaagctgatggcca
ggaggaggagcttggagagcggcagacttttgggggcaaagatgttcagt
ttctggcagatgtacaagcccagccaggtgaccacgaagtgcacaagggt
cagctcatgttggggaagccgtgttgtacatagatccatttgtgaggaac
acgatgcagatggacaccagcagttgaacagagcccggcggcgatgcgcc
cgttgccccggacccgttctgccagcgatgccatgatgcccgcgctgccg
gagcagcgtcctcggccgaatcccggctgtcca
aatagctgttcaatgagcctgggggtcctagcagtcccaatctagtgctg
gaggcccagagtatttctggagagctgctggtctttagtctatgctggcc
tcccaaggaagtagttagctctaatacgggcaggcaaaggaatgtttcag
cagcaggatagatggacttgccagcaggagggagggcaagcaggcaaaaa
gcagttcccttctatcatgtccttatatgtgagctgccacaagaaactgc
agctcagacttagggtagaacttcctgcttcaaatctcttagaggtgtgc
ccagccacttaggttttagtcaattccagatgtagtcaagtggacaacat
tactgggaggaagcagttttaagtcaaacttatgcatatatacttcactt
tccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134317353_134318440
seq2: B6Ng01-039I04.b_44_1126

seq1  GAATTCCACGGGGAGCTTTTCCATAGACGACACACACGTTTGTCGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGGGAGCTTTTCCATAGACGACACACACGTTTGTCGCTTCT  50

seq1  CATCCTCATGATTCGCCTTTCTCTTCTCTGCCAAAGCTCAGGGCCGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCATGATTCGCCTTTCTCTTCTCTGCCAAAGCTCAGGGCCGTTGG  100

seq1  ACCAGCTTACTCTTACTGCCTTCCTGCTCGCTGAGTTTAAAGTGGGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTACTCTTACTGCCTTCCTGCTCGCTGAGTTTAAAGTGGGTGTA  150

seq1  GGTGAGGATACCGAAGAGCGTGCATAGGATGCCGAGTCCCTGGTTTACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGATACCGAAGAGCGTGCATAGGATGCCGAGTCCCTGGTTTACCG  200

seq1  ACAGGGGATCCTTAAATAGAATGTATCCTCCACAGAGAGTGGTGCAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGATCCTTAAATAGAATGTATCCTCCACAGAGAGTGGTGCAGAAC  250

seq1  TTGAAGTGTCCGAACATGTTGTAGGTGACTGGTGACGTGTTCCCAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGTCCGAACATGTTGTAGGTGACTGGTGACGTGTTCCCAATGAT  300

seq1  CCAGTAAATCGATAAGTTCACCATGAAAGCGATTATTCCAGACAGCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAATCGATAAGTTCACCATGAAAGCGATTATTCCAGACAGCAGTA  350

seq1  CCATAAGCAAAGCAGAAACTGACCAGGGACCAAATATTCCTCCCTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCAAAGCAGAAACTGACCAGGGACCAAATATTCCTCCCTCTGCA  400

seq1  AACACTGGCTCGAAGAAGGGCACAGCCACCAGCAGCATGGCAGAAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGCTCGAAGAAGGGCACAGCCACCAGCAGCATGGCAGAAGACAT  450

seq1  GGGGGCCTGGTAGTAAAGTAGCTGCATGGAGTTCACCTGCAGTTCGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCTGGTAGTAAAGTAGCTGCATGGAGTTCACCTGCAGTTCGTGCT  500

seq1  GCTTGGCTCCGACCCACTGAGCTGCTGTCTCCTCTGCTCTCGTCACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTCCGACCCACTGAGCTGCTGTCTCCTCTGCTCTCGTCACCTCC  550

seq1  TCAGTTACGCTTTCTTCTCATGTCTGTTGTCTCTATACTTGTAGTCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTACGCTTTCTTCTCATGTCTGTTGTCTCTATACTTGTAGTCTCTA  600

seq1  AACCTTGGGTTACAGCTTCAAAATTTACAAAGTCTACAGCGTGAGCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGGTTACAGCTTCAAAATTTACAAAGTCTACAGCGTGAGCTGTA  650

seq1  TTCTGACGGAGAATCTCTTCTGGTACCAGAAGGTTTGGATGGCTATGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACGGAGAATCTCTTCTGGTACCAGAAGGTTTGGATGGCTATGATC  700

seq1  ACCGGCGTGGTCATGGCCTTGGCCAGCTGATAGGTGCCTATGGTGTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCGTGGTCATGGCCTTGGCCAGCTGATAGGTGCCTATGGTGTTGTT  750

seq1  CTGCAGAGAAAGGTTGGTGAAGACCACAAAGCCACAGAAGCTGAGGGCCA  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGCAGAGAAAGGTTGGTGAAGACCACAAAGCCACAGAAGCTGATGGCCA  800

seq1  GGAGGAGGAGCTTGGAGAGCGGCAGACTTTTGGGGGCAAAGATGTTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGCTTGGAGAGCGGCAGACTTTTGGGGGCAAAGATGTTCAGT  850

seq1  TTCTGGCAGATGTACAAGCCCAGCCAGGTGACCACGAAGTGCACCAGGGT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTGGCAGATGTACAAGCCCAGCCAGGTGACCACGAAGTGCACAAGGGT  900

seq1  CAGGCTCATGTTGGGGAAGCCGTGGTGTACATAGATCCATTTGTTGAGGA  950
      || ||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  CA-GCTCATGTTGGGGAAGCCGTGTTGTACATAGATCCATTTG-TGAGGA  948

seq1  ACACGATGCAGATGGACACCAGCAGGTTGAACAGGAGCCCGGCGGCGATG  1000
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  ACACGATGCAGATGGACACCAGCA-GTTGAACA-GAGCCCGGCGGCGATG  996

seq1  CGCCCGTTGCCCCGGACCCGGTCCGCCAGCGATGCCATGATGCCCGCCGG  1050
      |||||||||||||||||||| || |||||||||||||||||||||||  |
seq2  CGCCCGTTGCCCCGGACCCGTTCTGCCAGCGATGCCATGATGCCCGC--G  1044

seq1  CTG-CGGAGCAGCGTCCTCGGCCGAGCCCGGGCTGTCCA  1088
      ||| |||||||||||||||||||||  || |||||||||
seq2  CTGCCGGAGCAGCGTCCTCGGCCGAATCCCGGCTGTCCA  1083

seq1: chr5_134456937_134457346
seq2: B6Ng01-039I04.g_68_477 (reverse)

seq1  GGGAAAGTGAAGTATATATGCATAAGTTTGACTTAAAACTGCTTCCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTGAAGTATATATGCATAAGTTTGACTTAAAACTGCTTCCTCCC  50

seq1  AGTAATGTTGTCCACTTGACTACATCTGGAATTGACTAAAACCTAAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTTGTCCACTTGACTACATCTGGAATTGACTAAAACCTAAGTGG  100

seq1  CTGGGCACACCTCTAAGAGATTTGAAGCAGGAAGTTCTACCCTAAGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACACCTCTAAGAGATTTGAAGCAGGAAGTTCTACCCTAAGTCTG  150

seq1  AGCTGCAGTTTCTTGTGGCAGCTCACATATAAGGACATGATAGAAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGTTTCTTGTGGCAGCTCACATATAAGGACATGATAGAAGGGAA  200

seq1  CTGCTTTTTGCCTGCTTGCCCTCCCTCCTGCTGGCAAGTCCATCTATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTGCCTGCTTGCCCTCCCTCCTGCTGGCAAGTCCATCTATCCT  250

seq1  GCTGCTGAAACATTCCTTTGCCTGCCCGTATTAGAGCTAACTACTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAAACATTCCTTTGCCTGCCCGTATTAGAGCTAACTACTTCCTT  300

seq1  GGGAGGCCAGCATAGACTAAAGACCAGCAGCTCTCCAGAAATACTCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCAGCATAGACTAAAGACCAGCAGCTCTCCAGAAATACTCTGGG  350

seq1  CCTCCAGCACTAGATTGGGACTGCTAGGACCCCCAGGCTCATTGAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCACTAGATTGGGACTGCTAGGACCCCCAGGCTCATTGAACAGC  400

seq1  TATTGAATTC  410
      ||||||||||
seq2  TATTGAATTC  410