BAC Information

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BAC

Clone NameB6Ng01-039K24
Chromosome5 (Build37)
Map Location 101,840,349 - 101,987,710
singlet/doubletdoublet
Overlap geneLOC100040920
Upstream geneSec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2
Downstream geneNkx6-1, Cds1, Wdfy3, EG666515, EG666527, LOC625780, Arhgap24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039K24.bB6Ng01-039K24.g
ACCDH866887DH866888
length1,1651,053
definitionDH866887|Mus musculus domesticus DNA, BAC clone: B6Ng01-039K24, 5' end.DH866888|Mus musculus domesticus DNA, BAC clone: B6Ng01-039K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,986,527 - 101,987,710)(101,840,349 - 101,841,410)
sequence
gaattcttcccagctccactctgcttaaccttgcttctgatcttcctatc
cacgccgagactctcacacatataaacatctttctctgacaacacactgc
tgtaaaccaattccaagacctggcctgctttgtatgcagttagcttggct
catgcatcctgaagggggttgccttgggttgggtacatgaggcccttgta
gtcaggccaagcgaaagcattggcagcatgcccaagcctaaagagctgag
ctggctacctgtgcagaacacccgtggcaagctgttactgcattcctggg
ctggttaccgcaccacgctttccggagtggggaattgctaatatctattt
ctcattttatttgaaaagggatgtgggcattacattggcttcataatgtc
ctaattttatttgtgaaaatgtaaataaggaaatttaccttctcaaccaa
gtttgcacacaaatctacgtttggatatagatttcaaccctcgtggtggg
aaaacattgcaaaaataagtggcataagattaacggtccccgtgaagcaa
gtcatcagattctctctgggtatagagtattaaggccacctggctggctg
gaaggggctgttcatcctcagaagaataggatgccagtgtggaagacaca
ttctaacttcaaggcattaaactatgactctcaaatccactcactgtcca
gttgctttggctatggcagctgtgtttacctgctaagttgtgaggctgtt
gaagccacacacactgtattatgtgagaaaacttccattaaaaactgtct
tagattgaatatagttggaaaataggcttgactaaacttggctccttttt
aaactacagagattatcaaagcccttcaggtgttcatgtccattgtgact
gttcagatacatgatcccgcttgtgttagtaatatagatttctatcacaa
gaagcatggatgcttcccagaccacagtttaggaaatgatggtaaaggcc
aaagactttacactatttgatatgctattctgttgtaatttccgtaaatt
acctgcttttaggatttggttcactcaactttccgaggtgtagtgtgagg
ggagttggtgaaattcattcttacaggaatcagggctcttgtgggccact
caactctttcctaac
gaattctctggaggcacttgagcatataggaagatgacttccaaggatcg
acagcctcctgctttgctaaacgggagggggagctgcctccctgattcag
cctcgggttcaaacatttttggtcctttatgaatcagtgacgactttaga
tgtaaaaagaaagaaaggaagaaagaaagaaagagagagagagagagaga
gagagagagagagagagagagagagagagagagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagggaggaaggaaggcacacgtgtaaatg
taaatagatgaatatacatggcctgtgttaggtccacttgctggagaaaa
ccgtgacgccctggactcagaaggtattgatttgcatcctggctcatcca
ctgtatgggaagtcacttacctacctgagctttagtgtctggatctaaga
aatgagcatctgtctggtactgcaggcgggaactgacatctgtgctatac
tgaatatggaatacacgttcagtgactatgtgttgatcgttcagcatgat
gcaagcatctatccacttctctctttacttagtggggtgaattttataaa
gctctcagacttagaacttttgatacaaaggctggtgtagataaagagtg
gagatttgatctcagaatgcctttccttctcttgatacactgtaggaaag
cacaggtttcatggtcaagatgaatgagaagaggaaatgaagaacccttc
atgcttacaaagaccaaagccaaagcaaacaaaacaaaagaggagccatg
tcaaccctacacattagtcacagttctcatgctgtgacaacgtatctgac
tgaatcagagtactgaaacaacagaatcacgtactgaaacattgtcacag
ccgagtttcagagatcaccggcacgatggcgagaggtgtggcagagcaca
tcatcacgtgaagcatgagctgcagcaactccatcgtcatcaaccagagg
cagtcataaaccttttcttccaatgagttgcatcacacttttgctggact
tcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_101986527_101987710
seq2: B6Ng01-039K24.b_44_1208 (reverse)

seq1  GTTAGGAAAGAGTTGAGTTTGCCCACAAGAGCCTGAATTTACCTGTAAAG  50
      ||||||||||||||||| | |||||||||||||   |||  ||||| |||
seq2  GTTAGGAAAGAGTTGAG-TGGCCCACAAGAGCCCTGATT--CCTGT-AAG  46

seq1  AAAATGGATTTTCACCAACTCCCTCAACACTACACCTTTGGGAAGTTTGA  100
      ||    || ||||||||||||||   ||||||||||  | ||||  ||||
seq2  AA---TGAATTTCACCAACTCCCCTCACACTACACC--TCGGAAAGTTGA  91

seq1  GTGAACCAAATCCTTAAAAAGGCAGGTTAAATTTACGGAAATTACAAACA  150
      ||||||||||||||   ||| ||||||  |||||||||||||||| ||||
seq2  GTGAACCAAATCCT---AAAAGCAGGT--AATTTACGGAAATTAC-AACA  135

seq1  GAATAGCATTATTCAAATAGTTGTAAAGTCTTTGGCCTTTACCATCATTT  200
      |||||||||   |||||||| |||||||||||||||||||||||||||||
seq2  GAATAGCAT--ATCAAATAG-TGTAAAGTCTTTGGCCTTTACCATCATTT  182

seq1  CTTAAACTGTGGTCTGGGAAGCATCCATGCTTCTTGTGATAGAAATCTAT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTGTGGTCTGGGAAGCATCCATGCTTCTTGTGATAGAAATCTAT  232

seq1  ATTACTTAACACAAGCGGGATCATGTATCTGAACAGTCACAATGGACATG  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAC-TAACACAAGCGGGATCATGTATCTGAACAGTCACAATGGACATG  281

seq1  AACACCTGAAGGGCTTTGATAATCTCTGTAGTTTAAAAAGGAGCCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGAAGGGCTTTGATAATCTCTGTAGTTTAAAAAGGAGCCAAGTT  331

seq1  TAGTCAAGCCTATTTTCCAACTATATTCAATCTAAGACAGTTTTTAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGCCTATTTTCCAACTATATTCAATCTAAGACAGTTTTTAATGG  381

seq1  AAGTTTTCTCACATAATACAGTGTGTGTGGCTTCAACAGCCTCACAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCTCACATAATACAGTGTGTGTGGCTTCAACAGCCTCACAACTT  431

seq1  AGCAGGTAAACACAGCTGCCATAGCCAAAGCAACTGGACAGTGAGTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTAAACACAGCTGCCATAGCCAAAGCAACTGGACAGTGAGTGGAT  481

seq1  TTGAGAGTCATAGTTTAATGCCTTGAAGTTAGAATGTGTCTTCCACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTCATAGTTTAATGCCTTGAAGTTAGAATGTGTCTTCCACACTG  531

seq1  GCATCCTATTCTTCTGAGGATGAACAGCCCCTTCCAGCCAGCCAGGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTATTCTTCTGAGGATGAACAGCCCCTTCCAGCCAGCCAGGTGGC  581

seq1  CTTAATACTCTATACCCAGAGAGAATCTGATGACTTGCTTCACGGGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACTCTATACCCAGAGAGAATCTGATGACTTGCTTCACGGGGACC  631

seq1  GTTAATCTTATGCCACTTATTTTTGCAATGTTTTCCCACCACGAGGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTTATGCCACTTATTTTTGCAATGTTTTCCCACCACGAGGGTTG  681

seq1  AAATCTATATCCAAACGTAGATTTGTGTGCAAACTTGGTTGAGAAGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATATCCAAACGTAGATTTGTGTGCAAACTTGGTTGAGAAGGTAA  731

seq1  ATTTCCTTATTTACATTTTCACAAATAAAATTAGGACATTATGAAGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTATTTACATTTTCACAAATAAAATTAGGACATTATGAAGCCAA  781

seq1  TGTAATGCCCACATCCCTTTTCAAATAAAATGAGAAATAGATATTAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGCCCACATCCCTTTTCAAATAAAATGAGAAATAGATATTAGCAA  831

seq1  TTCCCCACTCCGGAAAGCGTGGTGCGGTAACCAGCCCAGGAATGCAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACTCCGGAAAGCGTGGTGCGGTAACCAGCCCAGGAATGCAGTAA  881

seq1  CAGCTTGCCACGGGTGTTCTGCACAGGTAGCCAGCTCAGCTCTTTAGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCACGGGTGTTCTGCACAGGTAGCCAGCTCAGCTCTTTAGGCT  931

seq1  TGGGCATGCTGCCAATGCTTTCGCTTGGCCTGACTACAAGGGCCTCATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGCTGCCAATGCTTTCGCTTGGCCTGACTACAAGGGCCTCATGT  981

seq1  ACCCAACCCAAGGCAACCCCCTTCAGGATGCATGAGCCAAGCTAACTGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCCAAGGCAACCCCCTTCAGGATGCATGAGCCAAGCTAACTGCA  1031

seq1  TACAAAGCAGGCCAGGTCTTGGAATTGGTTTACAGCAGTGTGTTGTCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCAGGCCAGGTCTTGGAATTGGTTTACAGCAGTGTGTTGTCAGA  1081

seq1  GAAAGATGTTTATATGTGTGAGAGTCTCGGCGTGGATAGGAAGATCAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGTTTATATGTGTGAGAGTCTCGGCGTGGATAGGAAGATCAGAA  1131

seq1  GCAAGGTTAAGCAGAGTGGAGCTGGGAAGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  GCAAGGTTAAGCAGAGTGGAGCTGGGAAGAATTC  1165

seq1: chr5_101840349_101841410
seq2: B6Ng01-039K24.g_67_1118

seq1  GAATTCTCTGGAGGCACTTGAGCATATAGGAAGATGACTTCCAAGGATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGGCACTTGAGCATATAGGAAGATGACTTCCAAGGATCG  50

seq1  ACAGCCTCCTGCTTTGCTAAACGGGAGGGGGAGCTGCCTCCCTGATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCCTGCTTTGCTAAACGGGAGGGGGAGCTGCCTCCCTGATTCAG  100

seq1  CCTCGGGTTCAAACATTTTTGGTCCTTTATGAATCAGTGACGACTTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGTTCAAACATTTTTGGTCCTTTATGAATCAGTGACGACTTTAGA  150

seq1  TGTAAAAAGAAAGAAAGGAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGAAAGAAAGGAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGA  200

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGA  250

seq1  AAGAAAGAAAGAAAGAAAGAAAGGGAGGAAGGAAGGCACACGTGTAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGGGAGGAAGGAAGGCACACGTGTAAATG  300

seq1  TAAATAGATGAATATACATGGCCTGTGTTAGGTCCACTTGCTGGAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGATGAATATACATGGCCTGTGTTAGGTCCACTTGCTGGAGAAAA  350

seq1  CCGTGACGCCCTGGACTCAGAAGGTATTGATTTGCATCCTGGCTCATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGACGCCCTGGACTCAGAAGGTATTGATTTGCATCCTGGCTCATCCA  400

seq1  CTGTATGGGAAGTCACTTACCTACCTGAGCTTTAGTGTCTGGATCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGGAAGTCACTTACCTACCTGAGCTTTAGTGTCTGGATCTAAGA  450

seq1  AATGAGCATCTGTCTGGTACTGCAGGCGGGAACTGACATCTGTGCTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATCTGTCTGGTACTGCAGGCGGGAACTGACATCTGTGCTATAC  500

seq1  TGAATATGGAATACACGTTCAGTGACTATGTGTTGATCGTTCAGCATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGGAATACACGTTCAGTGACTATGTGTTGATCGTTCAGCATGAT  550

seq1  GCAAGCATCTATCCACTTCTCTCTTTACTTAGTGGGGTGAATTTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATCTATCCACTTCTCTCTTTACTTAGTGGGGTGAATTTTATAAA  600

seq1  GCTCTCAGACTTAGAACTTTTGATACAAAGGCTGGTGTAGATAAAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGACTTAGAACTTTTGATACAAAGGCTGGTGTAGATAAAGAGTG  650

seq1  GAGATTTGATCTCAGAATGCCTTTCCTTCTCTTGATACACTGTAGGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTGATCTCAGAATGCCTTTCCTTCTCTTGATACACTGTAGGAAAG  700

seq1  CACAGGTTTCATGGTCAAGATGAATGAGAAGAGGAAATGAAGAACCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTTCATGGTCAAGATGAATGAGAAGAGGAAATGAAGAACCCTTC  750

seq1  ATGCTTACAAAGACCAAAGCCAAAGCAAACAAAACAAAAGAGGAGCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACAAAGACCAAAGCCAAAGCAAACAAAACAAAAGAGGAGCCATG  800

seq1  TCAACCCTACACATTAGTCACAGTTCTCATGCTGTGACAACGTATCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTACACATTAGTCACAGTTCTCATGCTGTGACAACGTATCTGAC  850

seq1  TGAATCAGAGTACTGAAACAACAGAATCACGTACTGAAACAATGTCACAG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAATCAGAGTACTGAAACAACAGAATCACGTACTGAAACATTGTCACAG  900

seq1  CCGAGTTTCAGAGGATCACCGGCCACGATGGCGAGGAGGGTGTGGCAGAG  950
      |||||||||||| ||||||||| ||||||||||||   ||||||||||||
seq2  CCGAGTTTCAGA-GATCACCGG-CACGATGGCGAG--AGGTGTGGCAGAG  946

seq1  CACATCCATCCACGTGGAAGCATGAGGCTGCAGCAACTCACATCGTCATC  1000
      ||||| ||| ||||| ||||||||| ||||||||||||| ||||||||||
seq2  CACAT-CAT-CACGT-GAAGCATGA-GCTGCAGCAACTC-CATCGTCATC  991

seq1  AACCAGGAGGCAGTCATAAACCTTTTCTTCCCATTGAGTTGCATCAACAC  1050
      ||||| ||||||||||||||||||||||| ||| ||||||||||| ||||
seq2  AACCA-GAGGCAGTCATAAACCTTTTCTT-CCAATGAGTTGCATC-ACAC  1038

seq1  -TTTGCT-GACTTC  1062
       |||||| ||||||
seq2  TTTTGCTGGACTTC  1052