BAC Information

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BAC

Clone NameB6Ng01-039L01
Chromosome5 (Build37)10 (Build37)
Map Location 120,448,762 - 120,449,12182,486,132 - 82,487,237
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
Downstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039L01.bB6Ng01-039L01.g
ACCDH866889DH866890
length1,0171,092
definitionDH866889|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L01, 5' end.DH866890|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,448,762 - 120,449,121)(82,486,132 - 82,487,237)
sequence
gaattcctgtcaaagctgagcttccccattgatttaacacaagcttgtct
ttagatccacatctgaggaggacactcacccggaggggtcctacaggact
gccaggggcacaacttcaccgcaaagcattctgccaggcttaccgccact
gcagacacactcgagaggccttgttaggtgagctgggctgctcttgataa
cagattacttccccttgactggtcatagaggaaaggctaagcaggataga
cgggactgggtgagagagagacagtagcttcttggatcagctctgagaca
ggtgacatcagcctggaagagtctcctcatacccaggaaccatgtcttgg
tcacctatgtacttctggggctatgtatggcaaccagcatgcagtaaact
tggattctgtcagtgtggtggtttaagtacgcttggtccatggagtggca
ttatttggaggtgtgaccttgttggagtgggtgtgggctttaagactctc
ttcataaccatgtggtcgtcagtcttctcccagccgtaaagaggtagaac
tctcagcaacttctgaagcattcctgcctggacagtgccatgcttccacc
tcgatgattgtcctggctggttttgtgtgtcaacttgacacaggctggag
ttatcacagagaaaggagcctctcttgaggaaatgcctccatgagatcca
gctgtaaggcattttctcaattagtgatcaagggtgggagggctcattgt
gggtggtgccatccctgggctggtggtcctgggttctataagagagcaag
ctgaacaagccaatggaagcaagccagtaaagaacatccctccatggcct
ctgcatcagctcctggctccaagttcctgccctgtgtgagtttttgtctt
gacttcctttggtgatgaacagcaatgtggaagtgtaagctgaataaacc
ctttcctccccagtgcactttttggtcacaatgttttgtgcaagatagaa
accctgactaagacaat
gaattctggctaccacagtcttagcttgacacacaggatccattcccttc
ttctgtggccagagtttgcttcaagagctgaccagaaaaccacaggtctg
tggataagtgaataaagacttaccaggagaaaaagatcgttttatgagga
aagggggaaacattattgggcagattgttgtattaaaaatggtgacacac
tttctgggctcagccttgtgcttttgaactcaggaagctcatgaaatgtt
ggcggtagccagtaaatgttagcttttcttcctggctgcagagaccgttt
cactgattcagctgctgttggggttattccagagctccggctgtctctac
tgggggcatgtccatccccaacccaggccacatctgtgtaactagcatct
tgtacaggacacgcaggactggttcctccaggatgcttttagtatcttgt
gagtttttgcatctgagaaactgtcctgtttcttaccaacttctttgttt
gagaccgtagcttctgtctctcctgctaccaccatgttgccttgttaaag
tagttagcacccgtgagtctctccacagcaggctcaggcagccatggcac
ttgcttcagagcctgtgggtagaatgtttgcctcacaggcagggagcctc
cagttcagttgccagttctttatatatctgtgacgtatacgtatatgttg
tatatacgtgtgtatatgtatatctctatatgggaatgcagctccgcgac
aggagcatgtggtgtaatggtctccccccacaggttttgctttccatggc
ttcaggtcaaagtgtggttgggaaatcattttgttgcacagaacgttcca
gcactgatgcacagatttaaattgcttattcatattgaatcctgtgtgag
atctgatgatgttacgttgtgtcctgtcagctgtgtaccaggcctctgag
ttttcacacagcaagagggccgagctcagaaactgctgcagagaattctt
gggggactcttcctggccgtgcttttgaggctcctcaaacgtcgatgcat
cggccaagggaccctggagctcttgttcgacggcacttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_120448762_120449121
seq2: B6Ng01-039L01.b_693_1060 (reverse)

seq1  TGTCTTAGTCAGGGTTTCTATTCCTGC---CTCCATCAGGACCAAGAAGC  47
      |||||||||||||||||||| || |||      |||   |||||| ||| 
seq2  TGTCTTAGTCAGGGTTTCTA-TCTTGCACAAAACATTGTGACCAAAAAGT  49

seq1  AAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACACTGCTGTTC  97
          ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCACTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTC  99

seq1  ATCACCACAAGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAA-------  140
      ||||||| | ||||||| |||   ||||||  |||| ||||||       
seq2  ATCACCAAAGGAAGTCAAGACAAAAACTCACACAGGGCAGGAACTTGGAG  149

seq1  GCAGGAGCTGATGCACAGGCCATGGAGAGATGTTTCTTATTGGCTTGCTT  190
       |||||||||||||| ||||||||||| ||||||  ||| ||||||||||
seq2  CCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTT  199

seq1  CCCTTGGCTTGCTCAGCTTGCTTTCTTATAGAACCCAAGACTACCAGCCC  240
      || |||||||| |||||||||| |||||||||||||| ||| ||||||||
seq2  CCATTGGCTTGTTCAGCTTGCTCTCTTATAGAACCCAGGACCACCAGCCC  249

seq1  AGGGATGTCACCACCTACAATGGGCCCTCCCATCCTTGATCACTAATTGA  290
      ||||||| ||||||| |||||| ||||||||| |||||||||||||||||
seq2  AGGGATGGCACCACCCACAATGAGCCCTCCCACCCTTGATCACTAATTGA  299

seq1  GATAATGCCTTATAGCTGGATCTCATGGAGGCATTTTCCTCAAGGGAGGC  340
      || ||||||||| |||||||||||||||||||| |||||||||| |||||
seq2  GAAAATGCCTTACAGCTGGATCTCATGGAGGCA-TTTCCTCAAGAGAGGC  348

seq1  TCCTTTCTCTGTGATAACTC  360
      ||||||||||||||||||||
seq2  TCCTTTCTCTGTGATAACTC  368

seq1: chr10_82486132_82487237
seq2: B6Ng01-039L01.g_63_1154

seq1  GAATTCTGGCTACCACAGTCTTAGCTTGACACACAGGATCCATTCCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTACCACAGTCTTAGCTTGACACACAGGATCCATTCCCTTC  50

seq1  TTCTGTGGCCAGAGTTTGCTTCAAGAGCTGACCAGAAAACCACAGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGCCAGAGTTTGCTTCAAGAGCTGACCAGAAAACCACAGGTCTG  100

seq1  TGGATAAGTGAATAAAGACTTACCAGGAGAAAAAGATCGTTTTATGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGTGAATAAAGACTTACCAGGAGAAAAAGATCGTTTTATGAGGA  150

seq1  AAGGGGGAAACATTATTGGGCAGATTGTTGTATTAAAAATGGTGACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAACATTATTGGGCAGATTGTTGTATTAAAAATGGTGACACAC  200

seq1  TTTCTGGGCTCAGCCTTGTGCTTTTGAACTCAGGAAGCTCATGAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGCTCAGCCTTGTGCTTTTGAACTCAGGAAGCTCATGAAATGTT  250

seq1  GGCGGTAGCCAGTAAATGTTAGCTTTTCTTCCTGGCTGCAGAGACCGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTAGCCAGTAAATGTTAGCTTTTCTTCCTGGCTGCAGAGACCGTTT  300

seq1  CACTGATTCAGCTGCTGTTGGGGTTATTCCAGAGCTCCGGCTGTCTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTCAGCTGCTGTTGGGGTTATTCCAGAGCTCCGGCTGTCTCTAC  350

seq1  TGGGGGCATGTCCATCCCCAACCCAGGCCACATCTGTGTAACTAGCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCATGTCCATCCCCAACCCAGGCCACATCTGTGTAACTAGCATCT  400

seq1  TGTACAGGACACGCAGGACTGGTTCCTCCAGGATGCTTTTAGTATCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGACACGCAGGACTGGTTCCTCCAGGATGCTTTTAGTATCTTGT  450

seq1  GAGTTTTTGCATCTGAGAAACTGTCCTGTTTCTTACCAACTTCTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTGCATCTGAGAAACTGTCCTGTTTCTTACCAACTTCTTTGTTT  500

seq1  GAGACCGTAGCTTCTGTCTCTCCTGCTACCACCATGTTGCCTTGTTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCGTAGCTTCTGTCTCTCCTGCTACCACCATGTTGCCTTGTTAAAG  550

seq1  TAGTTAGCACCCGTGAGTCTCTCCACAGCAGGCTCAGGCAGCCATGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGCACCCGTGAGTCTCTCCACAGCAGGCTCAGGCAGCCATGGCAC  600

seq1  TTGCTTCAGAGCCTGTGGGTAGAATGTTTGCCTCACAGGCAGGGAGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGAGCCTGTGGGTAGAATGTTTGCCTCACAGGCAGGGAGCCTC  650

seq1  CAGTTCAGTTGCCAGTTCTTTATATATCTGTGACGTATACGTATATGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGTTGCCAGTTCTTTATATATCTGTGACGTATACGTATATGTTG  700

seq1  TATATACGTGTGTATATGTATATCTCTATATGGGAATGCAGCTCCGCGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACGTGTGTATATGTATATCTCTATATGGGAATGCAGCTCCGCGAC  750

seq1  AGGAGCATGTGGTGTAATGGTCTCCCCCCACAGGTTTTGCTTTCCATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATGTGGTGTAATGGTCTCCCCCCACAGGTTTTGCTTTCCATGGC  800

seq1  TTCAGGTCAAAGTGTGGTTGGGAAATCATTTTGTTGCACAGAACGTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCAAAGTGTGGTTGGGAAATCATTTTGTTGCACAGAACGTTCCA  850

seq1  GCACTGATGCACAGATTTTAAATTGCTTATTCATATTGAATCCTGTGTTG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  GCACTGATGCACAGA-TTTAAATTGCTTATTCATATTGAATCCTGTG-TG  898

seq1  AGATCTGATGATGTTACGTTGTGTCCTGTCAGGCTGTGTACCAGGCCTCT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGATCTGATGATGTTACGTTGTGTCCTGTCA-GCTGTGTACCAGGCCTCT  947

seq1  GAGTTTTCACACAGCAAGAGGGCCGAGCTCAGACACTGCTGCAGAGAATT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGTTTTCACACAGCAAGAGGGCCGAGCTCAGAAACTGCTGCAGAGAATT  997

seq1  CTTGGGGGACCTCTTCCTGGCCGTGCTTTTGAGGCTCCCTCAGACAGTCG  1050
      ||||||||| |||||||||||||||||||||||||| ||||| || ||| 
seq2  CTTGGGGGA-CTCTTCCTGGCCGTGCTTTTGAGGCT-CCTCAAAC-GTC-  1043

seq1  GATGCATCGGGCCAGAGGGGACCCTGGGAAGCTCTGTGTCAGACCGGCAC  1100
      |||||||||| |   | ||||||||||  |||||| |||  || ||||||
seq2  GATGCATCGGCC---AAGGGACCCTGG--AGCTCT-TGTTCGA-CGGCAC  1086

seq1  TTGGGG  1106
      ||||||
seq2  TTGGGG  1092