BAC Information

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BAC

Clone NameB6Ng01-040A02
Chromosome5 (Build37)
Map Location 81,290,580 - 81,291,732
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040A02.bB6Ng01-040A02.g
ACCDH867105DH867106
length6991,141
definitionDH867105|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A02, 5' end.DH867106|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaataagactcttaatgaccaagatacacttaaagaaatgttc
aattaccttagtcatcagggaaatgtgaattgaaagggctctgagattcc
accttacacaggccagaatgagtaagatctaaaactcatgtgacagcact
attattactattagcattactagtgggagtacaatctggtaaaacaactc
aggaaatcaatctggcagcttctcatagaattgagaatagttctagcttg
ggactcagtgcttggtcatatatccaaaaggcgctccaccataccccaag
gacacttgctccactatgttcatagcagctttatttccaatacaagaaac
tgccaacaacccagataacaatcaaccaaaaacgggtatagaaaatgtgg
ttcatttgcacaatggaataacactcagctatttaaaacaaggacatcat
gaaatttgcaggcacagaaaatatcctgaggtaacccaggcacagaagga
catacatgcacttacttctaagtggacatttgccataaaattcacgatac
ccatgctaaaatccatagacctaaagaagctaaataacaaagagggccaa
cagatgatgcttgaagctcactcagaaggggaaataaaattgtcttagga
ggttgaaggagggtttgaacaggctgaaagaggggtggggaggggaaca

gaattcaaaatctttctcattcaggccccagagcactaagatcgtaggca
tacaacaccagttctgacttaaataatccctttgaatagaacgttttttg
aaatctaaatattgcagaatttagtgtccccatttttaggtacagtaaat
ataaatatactgtaaatataaatatactattttgtatatgataaattaat
ttataaatctatataaatggatacctaatttgtatatcaattcatgtctc
atacacacctgctcagacatctaataatgcagcaatagtctagtcttttc
ccaaaccaaaaatttttcccaccagttgaatcttcttgtttaccctcagg
cattgataattactctgttcagaaaacaaaacaaaacaaaaacaaaacaa
aaaaaaacccaaaaaacaaaaaaaacccctctgttttctccttattttag
ccattgctttgcttttctcgctaatgaccaattcaccagaggtgatggta
aacgagccctcatctcattagtctcctcttaaaaaccaacctactggccc
tgcttcacaatgtgtcaagaaccagcccatcttcactgcctctaccatga
tattggcccagtactttatcatctctgacatggaccactgcaacagcttc
ataactgctcgctccatttatttgttcctgcccacccccttatagtctca
agcacacagaacaaggagaaataacaaggcaatcgcaccctgtctgtgca
attctcaagaaaatacagtgactatctatttcatctggagcacatatcaa
tgactaataaggccctccagaccatatcatgatgatagttatcatgccac
tttccctatcagcttctcggttatttttaaatatatcagcatgctcctat
catggattcttgcatgagctgctccatcagccttacagatttctccacat
gtttatgaacatgttaattacatctttaaatgtctccattttcaatgcaa
agaaaaaaatataaataatgtaaaatataatattacatactgtgtggttt
gaatatgtctggcccaggaagtagcactatggaaggtgtgcctttggagt
aggtgcactgtggcatggcctaaagaactaatcctaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81290580_81291732
seq2: B6Ng01-040A02.g_65_1205

seq1  GAATTCAAAATCTTTCTCATTCAGGCCCCAGAGCACTAAGATCGTAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCTTTCTCATTCAGGCCCCAGAGCACTAAGATCGTAGGCA  50

seq1  TACAACACCAGTTCTGACTTAAATAATCCCTTTGAATAGAACGTTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACCAGTTCTGACTTAAATAATCCCTTTGAATAGAACGTTTTTTG  100

seq1  AAATCTAAATATTGCAGAATTTAGTGTCCCCATTTTTAGGTACAGTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAATATTGCAGAATTTAGTGTCCCCATTTTTAGGTACAGTAAAT  150

seq1  ATAAATATACTGTAAATATAAATATACTATTTTGTATATGATAAATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATACTGTAAATATAAATATACTATTTTGTATATGATAAATTAAT  200

seq1  TTATAAATCTATATAAATGGATACCTAATTTGTATATCAATTCATGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCTATATAAATGGATACCTAATTTGTATATCAATTCATGTCTC  250

seq1  ATACACACCTGCTCAGACATCTAATAATGCAGCAATAGTCTAGTCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACCTGCTCAGACATCTAATAATGCAGCAATAGTCTAGTCTTTTC  300

seq1  CCAAACCAAAAATTTTTCCCACCAGTTGAATCTTCTTGTTTACCCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAAAATTTTTCCCACCAGTTGAATCTTCTTGTTTACCCTCAGG  350

seq1  CATTGATAATTACTCTGTTCAGAAAACAAAACAAAACAAAAACAAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATAATTACTCTGTTCAGAAAACAAAACAAAACAAAAACAAAACAA  400

seq1  AAAAAAACCCAAAAAACAAAAAAAACCCCTCTGTTTTCTCCTTATTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCCAAAAAACAAAAAAAACCCCTCTGTTTTCTCCTTATTTTAG  450

seq1  CCATTGCTTTGCTTTTCTCGCTAATGACCAATTCACCAGAGGTGATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTTTGCTTTTCTCGCTAATGACCAATTCACCAGAGGTGATGGTA  500

seq1  AACGAGCCCTCATCTCATTAGTCTCCTCTTAAAAACCAACCTACTGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGCCCTCATCTCATTAGTCTCCTCTTAAAAACCAACCTACTGGCCC  550

seq1  TGCTTCACAATGTGTCAAGAACCAGCCCATCTTCACTGCCTCTACCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACAATGTGTCAAGAACCAGCCCATCTTCACTGCCTCTACCATGA  600

seq1  TATTGGCCCAGTACTTTATCATCTCTGACATGGACCACTGCAACAGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCCCAGTACTTTATCATCTCTGACATGGACCACTGCAACAGCTTC  650

seq1  ATAACTGCTCGCTCCATTTATTTGTTCCTGCCCACCCCCTTATAGTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCTCGCTCCATTTATTTGTTCCTGCCCACCCCCTTATAGTCTCA  700

seq1  AGCACACAGAACAAGGAGAAATAACAAGGCAATCGCACCCTGTCTGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGAACAAGGAGAAATAACAAGGCAATCGCACCCTGTCTGTGCA  750

seq1  ATTCTCAAGAAAATACAGTGACTATCTATTTCATCTGGAGCACATATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAGAAAATACAGTGACTATCTATTTCATCTGGAGCACATATCAA  800

seq1  TGACTAATAAGGCCCTCCAGACCATATCATGATGATAGTTATCATGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATAAGGCCCTCCAGACCATATCATGATGATAGTTATCATGCCAC  850

seq1  TTTCCCTATCAGCTTCTCGGTTATTTTTAAATATATCAGCATGCTCCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTATCAGCTTCTCGGTTATTTTTAAATATATCAGCATGCTCCTAT  900

seq1  CATGGATTCTTGCATGAGCTGCTCCATCAGCCTTACCAGATTTCTCCACA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATGGATTCTTGCATGAGCTGCTCCATCAGCCTTA-CAGATTTCTCCACA  949

seq1  TGTTTATGAACATGTTAATTACATCTTTAAATGTCTCCATTTTCCAATGC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTTATGAACATGTTAATTACATCTTTAAATGTCTCCATTTT-CAATGC  998

seq1  AAAAGAAAATATATATATATATGT-ATATAT-ATATTACATACTGTGGTG  1048
      |||  |||| ||||| ||| |||| | |||| |||||||||||||| |||
seq2  AAAGAAAAAAATATAAATA-ATGTAAAATATAATATTACATACTGT-GTG  1046

seq1  GTTTGAATATGTCTGGCCCAGGAAGTAGCACTATTTGAAGGTGTGGCCTT  1098
      ||||||||||||||||||||||||||||||||| | ||||||||| |   
seq2  GTTTGAATATGTCTGGCCCAGGAAGTAGCACTA-TGGAAGGTGTGCC---  1092

seq1  TTTGGAGTAGGTGTGGCACTGTGGGCATGGGCTTTAAGACACTAATCCTA  1148
      ||||||||||||   ||||||| ||||| ||| | |||| ||||||||||
seq2  TTTGGAGTAGGT---GCACTGT-GGCAT-GGCCTAAAGA-ACTAATCCTA  1136

seq1  ACTGC  1153
      |||||
seq2  ACTGC  1141


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