BAC Information

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BAC

Clone NameB6Ng01-040B06
Chromosome5 (Build37)
Map Location 63,460,361 - 63,461,206
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040B06.bB6Ng01-040B06.g
ACCDH867156DH867157
length852949
definitionDH867156|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B06, 5' end.DH867157|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagaccaggctggcgtcaaacttagaaaactgcctgca
tttgtctcccaagtgctgggaccaaaggcatgtgcaaccactgccctgtg
aatctgtttttcttttaaggcagtcaactttgtttttgtgtttaccattg
ctagtgtggcacatggaatcttacaatttgattcattccagaaagaatgg
tttaagagcccagagaatttttgggttttttgtttgtttgtttgtttgtt
tgctgttttgctggtggaaaaggaaaagttactatttaaaccacctacct
tcagaaattgaacagaggtatgtaacaatgggggatgggaaataagggta
accaacagaaagtcccagataccaaaaaagcaagggcctcccaggaccca
ggtcccaacagggatgaaattagctgaaatacccaacatagggaagagag
agagcctgtagagaccatatggagaggttcagcatggcccctggttgagg
gctggagccacctacccttctcaagaattttaacccagggttgccccttt
ctaaaggaaatatatgaacaaagagtggagcagagaatgaagcaaaggcc
atccagagactgccccagttatggattcatcccatatacagtcatgaagg
gaataacatttgaaaatgtaaataaataaaaataactaataaattatttt
caaaaacaagctgagcaaactgccctccccttctcaaaaaaaaaaaaaaa
aacacctattttcagaaaatttttcttttttctgaagaaagtatttttct
gatttttctgtagttcctcatgacaaacactaaacttgcaggttagatat
aa
gaattctcacccttaggaatgctgaatggctgagaagaacttgaaaaaaa
tgttcaacattcttattcatcagggaaatgcaagtcaaaaccctgagatt
ccacctcacaccagtcagaatggctaggattaaaaattcaggtgacagca
gatgctggtgaggatgtggagaaagagcaacactcctccattgctggttg
gattgcaagcttctacaaccactctggacatcagtctgggggttcctcag
aaaactggacatagtactactggttgatccagcaatacctctcctgggca
tatatccagaagatgttccaactggtaatgaggacacatgctccactatg
ttcatagcagccctatttataataaccagaagctggaaagaacccaaatg
ttcctcaacagaggatgggtacagaaaatgtggtatatttacacaatgga
gtactactcagctattaaaaactatgaatttatgaaattcttgggcaaat
ggatgtatcttgaggatatcatcctcagcgaggtaaccaaatcacaaaag
aagtcacgtgatatgcactctctgataatcggatgttagctcagaaacct
agaatacccaagatacaacttccaaaacacaaaaaatcaagaaaaaaaaa
agaccaactcatggatactacattcctccctattatagggaataaattat
ccatggaaggagttgcagagacaaagtttggagctaagatttaaaggatg
cacatccagagactgccccacctggggggttcatccctaatcagccacca
aaagcagacactagtgcataccccagcagatttttctggaagggaccttg
atatagctgtctcctgttaagctttgccagtgctctggcaattcctaata
ggatgatcactctcttctttaggatggtacccagggtctcttatttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_63460361_63461206
seq2: B6Ng01-040B06.b_42_893 (reverse)

seq1  TTATATCTTACCTGCAAG-TTAGTGTTTGTCATGAGG-ACTACAGAAAAA  48
      |||||||| ||||||||| |||||||||||||||||| ||||||||||||
seq2  TTATATCTAACCTGCAAGTTTAGTGTTTGTCATGAGGAACTACAGAAAAA  50

seq1  TCAG-AAAATACTTTTCTTCAG-AAAAAGAATAA-TTTCTGAAAATAGGT  95
      |||| ||||||| ||||||||| |||||||| || |||||||||||||||
seq2  TCAGAAAAATAC-TTTCTTCAGAAAAAAGAAAAATTTTCTGAAAATAGGT  99

seq1  GTTTTTTTTTTTTTTTTTGAGAAGGGGAGGGCAGTTTGCTCAGCTTGTTT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTTGAGAAGGGGAGGGCAGTTTGCTCAGCTTGTTT  149

seq1  TTGAAAATTATTTATTAGTTA-TTTTATTTATTTACA-TTTCAAATGTTA  193
      |||||||| |||||||||||| ||||||||||||||| ||||||||||||
seq2  TTGAAAATAATTTATTAGTTATTTTTATTTATTTACATTTTCAAATGTTA  199

seq1  TTCCCTTCATGACTGTATATGGGATGAATCCATAACTGGGGCAGTCTCTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCATGACTGTATATGGGATGAATCCATAACTGGGGCAGTCTCTG  249

seq1  GATGGCCTTTGCTTCATTCTCTGCTCCACTCTTTGTTCATATATTTCCTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTTTGCTTCATTCTCTGCTCCACTCTTTGTTCATATATTTCCTT  299

seq1  TAGAAAGGGGCAACCCTGGGTTAAAATTCTTGAGAAGGGTAGGTGGCTCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGGGCAACCCTGGGTTAAAATTCTTGAGAAGGGTAGGTGGCTCC  349

seq1  AGCCCTCAACCAGGGGCCATGCTGAACCTCTCCATATGGTCTCTACAGGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCAACCAGGGGCCATGCTGAACCTCTCCATATGGTCTCTACAGGC  399

seq1  TCTCTCTCTTCCCTATGTTGGGTATTTCAGCTAATTTCATCCCTGTTGGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTCCCTATGTTGGGTATTTCAGCTAATTTCATCCCTGTTGGG  449

seq1  ACCTGGGTCCTGGGAGGCCCTTGCTTTTTTGGTATCTGGGACTTTCTGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTCCTGGGAGGCCCTTGCTTTTTTGGTATCTGGGACTTTCTGTT  499

seq1  GGTTACCCTTATTTCCCATCCCCCATTGTTACATACCTCTGTTCAATTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCCTTATTTCCCATCCCCCATTGTTACATACCTCTGTTCAATTTC  549

seq1  TGAAGGTAGGTGGTTTAAATAGTAACTTTTCCTTTTCCACCAGCAAAACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTAGGTGGTTTAAATAGTAACTTTTCCTTTTCCACCAGCAAAACA  599

seq1  GCAAACAAACAAACAAACAAACAAAAAACCCAAAAATTCTCTGGGCTCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAACAAACAAACAAACAAAAAACCCAAAAATTCTCTGGGCTCTT  649

seq1  AAACCATTCTTTCTGGAATGAATCAAATTGTAAGATTCCATGTGCCACAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTCTTTCTGGAATGAATCAAATTGTAAGATTCCATGTGCCACAC  699

seq1  TAGCAATGGTAAACACAAAAACAAAGTTGACTGCCTTAAAAGAAAAACAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGGTAAACACAAAAACAAAGTTGACTGCCTTAAAAGAAAAACAG  749

seq1  ATTCACAGGGCAGTGGTTGCACATGCCTTTGGTCCCAGCACTTGGGAGAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGGGCAGTGGTTGCACATGCCTTTGGTCCCAGCACTTGGGAGAC  799

seq1  AAATGCAGGCAGTTTTCTAAGTTTGACGCCAGCCTGGTCTACAGAGTGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGGCAGTTTTCTAAGTTTGACGCCAGCCTGGTCTACAGAGTGAA  849

seq1  TTC  846
      |||
seq2  TTC  852