BAC Information

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BAC

Clone NameB6Ng01-040K09
Chromosome5 (Build37)
Map Location 49,528,717 - 49,681,950
singlet/doubletdoublet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040K09.bB6Ng01-040K09.g
ACCDH867543DH867544
length1,014998
definitionDH867543|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K09, 5' end.DH867544|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,680,931 - 49,681,950)(49,528,717 - 49,529,721)
sequence
gaattcttgggggaagaaatggaagaaggagtatatgtgtatgtatatat
atgttttctagagtggttttatcatcttacatctctgttgttattgtatg
agcaatcaaatttaccagtaccctgtcaacaattcttcttgtctcaactt
tgatcctagatattttaatagaaatattttgatgttcttattgcaatttt
cctctggagtataatcataacatgaaatatattttcatgtatttatcacc
tatatttcctttttggtgaaaaacttttgcatagtttttgctcatatttg
aattggattttgtacttttatgttactgggttttgaagttctcagtatat
tgtagattctatttttgtcaggatgtatatagtaaatatttcattatgct
ctgtagcttgccttttaactgtttatgaaaatctttgataatagaagtgt
taaacttgatgttatccagttttcagtttctccttttagaagtcacatat
ctgtagccaagttttaagcttctttgtgtagttactgaagagtttcttca
aattcttttttgattaaaatcttgtttactttattgcttttaaaaataaa
ccactttttatatctgctatcccacgctgtcctgcaactcactattttgt
cctgactgacctcaaatacaaaatccttccattttaccttccagtgtgaa
tgaatgaaaggcacacaccatgatgggtgtctttctgaaacttctatagc
tttacattttacatcaaagtttaggattaattgtgatctacactttaaaa
aaaactacattttacacttttttttctgaagacacaggaactttatctat
gtccattttccatatggatgtggactgctccactgcaacctatccccacc
taatggatggtttcattccttgaataccaactgcacttaaaaaaaactct
gttgttaataatcaatggtggaatagtttttttttatgggttgattggcc
tctcctcaaaggtt
gaattccagacaaaaagagttgaaaggtctgcttgggtcaagagaagttg
gaatcacccaccttgaacacaagtgtgagtctgaactgtcttacttatgg
agcccttaggaacattcagtatcagccataacagactttggacagactgt
caagcatctttcacaattttgtggtttcatggtgagaacgatatccaaca
gtaacagcctctagtttccagagaaatgaatgaggaagtaggtatggaag
tccccatttgatgtttttgtatgaatccttttctctttttcctgctgcta
ataccaatgctaaacttcacctgtacctaaggcatacacagtacaggctg
gccttcaaaatctggagccttcaaagatgtgcaggcttctcctcaggtgg
atctccattctgagtcctgtggcatcttagtggcaaaacaatctcaggaa
actgaatgggttgtaaacgaaattatagatattcagcatcccatgtgttt
ggtagaattattaatggagaaaatgaaaaagtgaagtggtgtgtcagggt
ttgctttcattattaatatactaataatagctttggatacaaggaccagg
aactcttataaagacaattatcattggattcagtagctattctaagttcg
tgctgattttatcctaatattcttatatttgcttttcccaaataatatca
aattcgcaggtttctcagaattaggtttaactctgtgggagggggtgaag
gacaatcctctaattagaaattaaaacaaaagaatgtattctgtatatgc
cagttgagataaagcattttgaagagcaatagcagtcatgtgatgggatc
aggaagaatgagattgcttgtgggaaatggttgtgtagcacccatctcca
ctctgctcacaccctagcatcttctcactggggctcaatcttccagggca
gggcctcccctccattgatccagttaagcctcttcgctcttcggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49680931_49681950
seq2: B6Ng01-040K09.b_43_1056 (reverse)

seq1  AACCTTTGAGGAGAGGCATATCAACACATAAAAAAAAACTATTACAACCA  50
      |||||||||||||||||  |||||| ||||||||||||||||| | ||||
seq2  AACCTTTGAGGAGAGGCCAATCAACCCATAAAAAAAAACTATT-CCACCA  49

seq1  TTTGATTATTAACAACAGAGTTTTTTTTTAAAGTTGCAGTTGGTATTCAA  100
       |||||||||||||||||||||||||||  ||| ||||||||||||||||
seq2  -TTGATTATTAACAACAGAGTTTTTTTT--AAG-TGCAGTTGGTATTCAA  95

seq1  GGAATGAAAACCATCCATTAGGGTGGGGATAGGTTGCAGTGGAGCAGTCC  150
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAATG-AAACCATCCATTA-GGTGGGGATAGGTTGCAGTGGAGCAGTCC  143

seq1  ACATCCATATGGAAAATGGACATAGATAAAGTTCCTGTGTCTTCAG-AAA  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATCCATATGGAAAATGGACATAGATAAAGTTCCTGTGTCTTCAGAAAA  193

seq1  AAAAGTGTAAAATGTAGTTTTTTTTAAAGTGTAGATCACAATTAATCCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTAAAATGTAGTTTTTTTTAAAGTGTAGATCACAATTAATCCTA  243

seq1  AACTTTGATGTAAAATGTAAAGCTATAGAAGTTTCAGAAAGACACCCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGATGTAAAATGTAAAGCTATAGAAGTTTCAGAAAGACACCCATC  293

seq1  ATGGTGTGTGCCTTTCATTCATTCACACTGGAAGGTAAAATGGAAGGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGTGCCTTTCATTCATTCACACTGGAAGGTAAAATGGAAGGATT  343

seq1  TTGTATTTGAGGTCAGTCAGGACAAAATAGTGAGTTGCAGGACAGCGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTGAGGTCAGTCAGGACAAAATAGTGAGTTGCAGGACAGCGTGG  393

seq1  GATAGCAGATATAAAAAGTGGTTTATTTTTAAAAGCAATAAAGTAAACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGATATAAAAAGTGGTTTATTTTTAAAAGCAATAAAGTAAACAA  443

seq1  GATTTTAATCAAAAAAGAATTTGAAGAAACTCTTCAGTAACTACACAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAATCAAAAAAGAATTTGAAGAAACTCTTCAGTAACTACACAAAG  493

seq1  AAGCTTAAAACTTGGCTACAGATATGTGACTTCTAAAAGGAGAAACTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAAAACTTGGCTACAGATATGTGACTTCTAAAAGGAGAAACTGAA  543

seq1  AACTGGATAACATCAAGTTTAACACTTCTATTATCAAAGATTTTCATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATAACATCAAGTTTAACACTTCTATTATCAAAGATTTTCATAAA  593

seq1  CAGTTAAAAGGCAAGCTACAGAGCATAATGAAATATTTACTATATACATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAAGGCAAGCTACAGAGCATAATGAAATATTTACTATATACATC  643

seq1  CTGACAAAAATAGAATCTACAATATACTGAGAACTTCAAAACCCAGTAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAAATAGAATCTACAATATACTGAGAACTTCAAAACCCAGTAAC  693

seq1  ATAAAAGTACAAAATCCAATTCAAATATGAGCAAAAACTATGCAAAAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTACAAAATCCAATTCAAATATGAGCAAAAACTATGCAAAAGTT  743

seq1  TTTCACCAAAAAGGAAATATAGGTGATAAATACATGAAAATATATTTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAAAAAGGAAATATAGGTGATAAATACATGAAAATATATTTCAT  793

seq1  GTTATGATTATACTCCAGAGGAAAATTGCAATAAGAACATCAAAATATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGATTATACTCCAGAGGAAAATTGCAATAAGAACATCAAAATATTT  843

seq1  CTATTAAAATATCTAGGATCAAAGTTGAGACAAGAAGAATTGTTGACAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAATATCTAGGATCAAAGTTGAGACAAGAAGAATTGTTGACAGG  893

seq1  GTACTGGTAAATTTGATTGCTCATACAATAACAACAGAGATGTAAGATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTAAATTTGATTGCTCATACAATAACAACAGAGATGTAAGATGA  943

seq1  TAAAACCACTCTAGAAAACATATATATACATACACATATACTCCTTCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCACTCTAGAAAACATATATATACATACACATATACTCCTTCTTC  993

seq1  CATTTCTTCCCCCAAGAATTC  1020
      |||||||||||||||||||||
seq2  CATTTCTTCCCCCAAGAATTC  1014

seq1: chr5_49528717_49529721
seq2: B6Ng01-040K09.g_70_1058

seq1  GAATTCCAGACAAAAAGAGTTGAAAGGTCTGCTTGGGTCAAGAGAAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAAAAAGAGTTGAAAGGTCTGCTTGGGTCAAGAGAAGTTG  50

seq1  GAATCACCCACCTTGAACACAAGTGTGAGTCTGAACTGTCTTACTTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCCACCTTGAACACAAGTGTGAGTCTGAACTGTCTTACTTATGG  100

seq1  AGCCCTTAGGAACATTCAGTATCAGCCATAACAGACTTTGGACAGACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTAGGAACATTCAGTATCAGCCATAACAGACTTTGGACAGACTGT  150

seq1  CAAGCATCTTTCACAATTTTGTGGTTTCATGGTGAGAACGATATCCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCTTTCACAATTTTGTGGTTTCATGGTGAGAACGATATCCAACA  200

seq1  GTAACAGCCTCTAGTTTCCAGAGAAATGAATGAGGAAGTAGGTATGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCCTCTAGTTTCCAGAGAAATGAATGAGGAAGTAGGTATGGAAG  250

seq1  TCCCCATTTGATGTTTTTGTATGAATCCTTTTCTCTTTTTCCTGCTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTTGATGTTTTTGTATGAATCCTTTTCTCTTTTTCCTGCTGCTA  300

seq1  ATACCAATGCTAAACTTCACCTGTACCTAAGGCATACACAGTACAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAATGCTAAACTTCACCTGTACCTAAGGCATACACAGTACAGGCTG  350

seq1  GCCTTCAAAATCTGGAGCCTTCAAAGATGTGCAGGCTTCTCCTCAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAAATCTGGAGCCTTCAAAGATGTGCAGGCTTCTCCTCAGGTGG  400

seq1  ATCTCCATTCTGAGTCCTGTGGCATCTTAGTGGCAAAACAATCTCAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATTCTGAGTCCTGTGGCATCTTAGTGGCAAAACAATCTCAGGAA  450

seq1  ACTGAATGGGTTGTAAACGAAATTATAGATATTCAGCATCCCATGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGGGTTGTAAACGAAATTATAGATATTCAGCATCCCATGTGTTT  500

seq1  GGTAGAATTATTAATGGAGAAAATGAAAAAGTGAAGTGGTGTGTCAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATTATTAATGGAGAAAATGAAAAAGTGAAGTGGTGTGTCAGGGT  550

seq1  TTGCTTTCATTATTAATATACTAATAATAGCTTTGGATACAAGGACCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCATTATTAATATACTAATAATAGCTTTGGATACAAGGACCAGG  600

seq1  AACTCTTATAAAGACAATTATCATTGGATTCAGTAGCTATTCTAAGTTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTATAAAGACAATTATCATTGGATTCAGTAGCTATTCTAAGTTCG  650

seq1  TGCTGATTTTATCCTAATATTCTTATATTTGCTTTTCCCAAATAATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTTATCCTAATATTCTTATATTTGCTTTTCCCAAATAATATCA  700

seq1  AATTCGCAGGTTTCTCAGAATTAGGTTTAACTCTGTGGGA-GGGGTGAAG  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATTCGCAGGTTTCTCAGAATTAGGTTTAACTCTGTGGGAGGGGGTGAAG  750

seq1  GACAATCCTCTAATTAGAAATTAAAAACAAAAGAATGTATTCTGTATATG  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GACAATCCTCTAATTAGAAATT-AAAACAAAAGAATGTATTCTGTATATG  799

seq1  CCAGTTGAGAT-AAGCATTTTGAAGAGCAATAGCAGTCATGTGATGGGAT  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGAGATAAAGCATTTTGAAGAGCAATAGCAGTCATGTGATGGGAT  849

seq1  CAGGAAGAATGGAGATTGCTTGTGGGAAAATGGTTGTGTAGCCACCCATC  898
      |||||||||| ||||||||||||||| |||||||||||||| ||||||||
seq2  CAGGAAGAAT-GAGATTGCTTGTGGG-AAATGGTTGTGTAG-CACCCATC  896

seq1  TCCCACTCTTGCCTCACCACCCTAGCATTCCTCTACACTGGGGCATCAAG  948
      | |||||||   |||| |||||||||| || ||| ||||||||| |||| 
seq2  T-CCACTCT--GCTCA-CACCCTAGCA-TCTTCT-CACTGGGGC-TCAA-  938

seq1  CCTTCACAGGGCAAGGGCCTCCCCTCCCATTGATCCCAGTTAAGGCCTCT  998
       |||| |||||| |||||||||||| |||||||| |||||||| ||||||
seq2  TCTTC-CAGGGC-AGGGCCTCCCCT-CCATTGAT-CCAGTTAA-GCCTCT  983

seq1  TCAGCTC  1005
      || ||||
seq2  TC-GCTC  989