BAC Information

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BAC

Clone NameB6Ng01-040M10
Chromosome5 (Build37)
Map Location 82,384,000 - 82,385,068
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040M10.bB6Ng01-040M10.g
ACCDH867639DH867640
length1,072627
definitionDH867639|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M10, 5' end.DH867640|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattcaatataatttaatgcattcattaagttacttattatatacatc
ttagtatatatctacacgtgtgtgcttgtgtacttagaccagagatcagt
gtcagcaattttccatagttgttctacatcttgcacccttcagtcagggt
ctctcagtaattggctagactctcttgtcagcagtttacagagaaatgtg
tcttgactatttcccagtgctgtacatactgtcttagggttttacctgta
catactgtcttagggttttactgctgtgaacagacaccatgaccaaggca
tatcttataaaggacaacatttaattggggctgacttataggttcagaga
ctcagtccattatcatcaaggtgggagcatggcagcatctaggcagacat
ggtgcaggaggagctgatagttctacatcttcatctgaatgctgctagca
gaatactggcttccaggcagtgaggatgaaggtcttaaagctcacaccca
ccatgagacacctactccaataaggccatacctactccaacagggccaca
ccttctaatagtgccgctctctggtctaagcatagacatatcataacaga
cacatgctattccactcataccatctaaactttaatactttttatccata
acataatgtaacagtgcagcttccaagatggattacatgtcccttttgca
cactaaaaatattttaaatgttaacaataaaatgggaatgttcaattgca
attattaaatgaagaatgtactgtcatgactgattttgtaggtatggtga
aacacacacaaatacttcaacttaatttacatgtagctgttgataagcta
agggaggaagcataatgtcttagggaagatggagcagcaactgacaagtt
atttgtttagtatctacatattagaaatttcaattaaggtttcaatttgc
ttttaatcttacagatgttggagactgagacatgagcattcagaatttga
tctagtgttgggctatgtaaaaaagtctggtgtcttggatggaagatcta
gaagagagagcacagaggaaaa

gaattctttgtttagctctgagccccattttttaatgaggttatttgatt
ttctggagtctaccttctgagttgacccataattgtttctgtctgaaaga
attacagggatgcaaatggagaggagcctgagaagaaggtccagcaacag
gcccaaaaagggatccagctcaatgagaagccccaagacctgacactatt
actgaggctatggagtgctcacaaaaaggacttagcatgaccacattctg
gaagacccaacaagcagctgaaagaaacagatagagacatttgcacccaa
ccaatggacagaagcatctggccctgttgttgaattagggaaagctgaaa
gaagctgaggagaagggtgatcctgtgggaggagcagcagtctcaattaa
cctggacccacccctgagatctctcaaatactggaccaccaaacagacag
catacatgggatgatatgagacccccagcacacatacagtagaggcctgt
tgggtctgtgttcattcagagatgatgcacctaaccctcaagagactaga
ggccccagggaatttagagatcaggttgggtgggggatggggacatccag
gtggagacagtgggatgtggaggacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82384000_82385068
seq2: B6Ng01-040M10.b_45_1115

seq1  GAATTCAATATAATTTAATGCATTCATTAAGTTACTTATTATATACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATAATTTAATGCATTCATTAAGTTACTTATTATATACATCT  50

seq1  TAGTATATATCTACACGTGTGTGCTTGTGTACTTAGACCAGAGATCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATATCTACACGTGTGTGCTTGTGTACTTAGACCAGAGATCAGTG  100

seq1  TCAGCAATTTTCCATAGTTGTTCTACATCTTGCACCCTTCAGTCAGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATTTTCCATAGTTGTTCTACATCTTGCACCCTTCAGTCAGGGTC  150

seq1  TCTCAGTAATTGGCTAGACTCTCTTGTCAGCAGTTTACAGAGAAATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAATTGGCTAGACTCTCTTGTCAGCAGTTTACAGAGAAATGTGT  200

seq1  CTTGACTATTTCCCAGTGCTGTACATACTGTCTTAGGGTTTTACCTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTATTTCCCAGTGCTGTACATACTGTCTTAGGGTTTTACCTGTAC  250

seq1  ATACTGTCTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAT  300

seq1  ATCTTATAAAGGACAACATTTAATTGGGGCTGACTTATAGGTTCAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAAAGGACAACATTTAATTGGGGCTGACTTATAGGTTCAGAGAC  350

seq1  TCAGTCCATTATCATCAAGGTGGGAGCATGGCAGCATCTAGGCAGACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCATTATCATCAAGGTGGGAGCATGGCAGCATCTAGGCAGACATG  400

seq1  GTGCAGGAGGAGCTGATAGTTCTACATCTTCATCTGAATGCTGCTAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGAGGAGCTGATAGTTCTACATCTTCATCTGAATGCTGCTAGCAG  450

seq1  AATACTGGCTTCCAGGCAGTGAGGATGAAGGTCTTAAAGCTCACACCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGCTTCCAGGCAGTGAGGATGAAGGTCTTAAAGCTCACACCCAC  500

seq1  CATGAGACACCTACTCCAATAAGGCCATACCTACTCCAACAGGGCCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGACACCTACTCCAATAAGGCCATACCTACTCCAACAGGGCCACAC  550

seq1  CTTCTAATAGTGCCGCTCTCTGGTCTAAGCATAGACATATCATAACAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATAGTGCCGCTCTCTGGTCTAAGCATAGACATATCATAACAGAC  600

seq1  ACATGCTATTCCACTCATACCATCTAAAC-TTAATAC-TTTTATCCATAA  648
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  ACATGCTATTCCACTCATACCATCTAAACTTTAATACTTTTTATCCATAA  650

seq1  CATAATGTAACAGTGCAGCTTCCAAGATGGATTACATGTCCCTTTTGCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTAACAGTGCAGCTTCCAAGATGGATTACATGTCCCTTTTGCAC  700

seq1  ACTAAAAATATTTTAAATGTTAACAATAAAATGGGAATGTTCAATTGCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATATTTTAAATGTTAACAATAAAATGGGAATGTTCAATTGCAA  750

seq1  TTATTAAATGAAGAATGTACTGTCATGACTGATTTTGTAGGTATGGTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATGAAGAATGTACTGTCATGACTGATTTTGTAGGTATGGTGAA  800

seq1  ACACACACAAATACTTCAACTTAATTTACATGTAGCTGTTGATAAGCTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAATACTTCAACTTAATTTACATGTAGCTGTTGATAAGCTAA  850

seq1  GGGAGGAAGCATAATGTCTTAGGGGAAGATGGAGCAGCAACTGACAAGTT  898
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGAGGAAGCATAATGTCTTA-GGGAAGATGGAGCAGCAACTGACAAGTT  899

seq1  A-TTGTTTAGTATCTACATATTAGAAATTTCAATT-AGGTTTCAATTTTG  946
      | ||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  ATTTGTTTAGTATCTACATATTAGAAATTTCAATTAAGGTTTCAA-TTTG  948

seq1  TCTTTAATCTTACAGTATGTTGGAGACTGAGACATGAGCATTCAGAATTT  996
        ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTTAATCTTACAG-ATGTTGGAGACTGAGACATGAGCATTCAGAATTT  997

seq1  GATC-AGTG-TGGGCTATGTAATAAAGTCTTGTGTCTTGGATGGAAGATC  1044
      |||| |||| |||||||||||| ||||||| |||||||||||||||||||
seq2  GATCTAGTGTTGGGCTATGTAAAAAAGTCTGGTGTCTTGGATGGAAGATC  1047

seq1  TAGAAGAGGAAGAGCA-GGAGGAAAA  1069
      ||||||||  ||||||  ||||||||
seq2  TAGAAGAG--AGAGCACAGAGGAAAA  1071


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