BAC Information

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BAC

Clone NameB6Ng01-040N11
Chromosome5 (Build37)
Map Location 46,165,456 - 46,261,686
singlet/doubletdoublet
Overlap geneLcorl
Upstream geneLdb2, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040N11.bB6Ng01-040N11.g
ACCDH867685DH867686
length1,115329
definitionDH867685|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N11, 5' end.DH867686|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,165,456 - 46,166,585)(46,261,358 - 46,261,686)
sequence
gaattccaaagtaaacaaaattatgctgcatttgtgttaattttaattct
tagtgatacaggtctaacatttaagtattgtaaacacaccagcagaataa
cttttctaaattattatgttataaatcttaaaagaaaataagatattata
acattagcttcctaaaagctgtgaagaaatatactttttaaagataatac
aaattctccaacactatttcagtaacacacagggaaaggcttttatttta
tttttaattacttcaattttttaaaaaaatgtagttctttaggtctttta
attatactagtgatttttgtaataaggattctcataattgaacacaaggc
ttcaaaaattaataaccaaatgaaagaatcaaaagtgaatactactttta
atattactgtttaatattgttaaaatatgaagttatcaatttagcagaaa
gtatatgctagaacctaattttaaagagcagtggaatagaattaatacaa
gctaggaaaaatagagaacagaagtgctttctcagtctctaccagttaaa
gataaagaaggtaaccacattccaccccaacccatatgtttctttctcca
aacatccacacggcgattatggactgacaactacaaccatgggaacggtt
aggtacaaagctggacgactataatcttcccaagcagtttaaatataaaa
actacttttccttatagatatgtaacaagtagaggaataagtgaaacaag
acccatttggttgaaagacgccagagagagacaaatacagaacagacttt
ttaatgtcaagcacgcatactcaagctgacaaatacttaagtggtacacc
agctgggaaatgatgtaagagatacagtactagggataggcctgcaatat
aacctatctatagcttcttcatcgtccagcactttttaaagacttgagaa
tagcagaaaataatgaaagtgggagcacaaaaatattttgagaggtgcca
tgagaagttgagacagaggcggataacaatggctagcactagagagctga
cctcttattggctctagtagacaaaaaagagtcgtttacattaagtagga
ctgatattaagaaaa
caggatacagaatttaaaagaaccaattataaattcgatcaaaacttgaa
ggggtttagggaagacaggaacaaacaactccaccaactgaaagagcata
gttagcaatgaaagccttagtgatatccaagtaaatacaaatatacaaat
gaatgaaatgaaggcaatccaagattcaaaaacagaattcagtaaagata
tagaaatattgaaaagcaaacatttacacacacatacacacgtgtgtgta
ataataaaaattaaagcagaggttatgaatttgagaagggggcacaggag
gaggtggaaggaggaagaggaggtgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46165456_46166585
seq2: B6Ng01-040N11.b_46_1160

seq1  GAATTCCAAAGTAAACAAAATTATGCTGCATTTGTGTTAATTTTAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGTAAACAAAATTATGCTGCATTTGTGTTAATTTTAATTCT  50

seq1  TAGTGATACAGGTCTAACATTTAAGTATTGTAAACACACCAGCAGAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATACAGGTCTAACATTTAAGTATTGTAAACACACCAGCAGAATAA  100

seq1  CTTTTCTAAATTATTATGTTATAAATCTTAAAAGAAAATAAGATATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAATTATTATGTTATAAATCTTAAAAGAAAATAAGATATTATA  150

seq1  ACATTAGCTTCCTAAAAGCTGTGAAGAAATATACTTTTTAAAGATAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCTTCCTAAAAGCTGTGAAGAAATATACTTTTTAAAGATAATAC  200

seq1  AAATTCTCCAACACTATTTCAGTAACACACAGGGAAAGGCTTTTATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCAACACTATTTCAGTAACACACAGGGAAAGGCTTTTATTTTA  250

seq1  TTTTTAATTACTTCAATTTTTTAAAAAAATGTAGTTCTTTAGGTCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTACTTCAATTTTTTAAAAAAATGTAGTTCTTTAGGTCTTTTA  300

seq1  ATTATACTAGTGATTTTTGTAATAAGGATTCTCATAATTGAACACAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTAGTGATTTTTGTAATAAGGATTCTCATAATTGAACACAAGGC  350

seq1  TTCAAAAATTAATAACCAAATGAAAGAATCAAAAGTGAATACTACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATTAATAACCAAATGAAAGAATCAAAAGTGAATACTACTTTTA  400

seq1  ATATTACTGTTTAATATTGTTAAAATATGAAGTTATCAATTTAGCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTGTTTAATATTGTTAAAATATGAAGTTATCAATTTAGCAGAAA  450

seq1  GTATATGCTAGAACCTAATTTTAAAGAGCAGTGGAATAGAATTAATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGCTAGAACCTAATTTTAAAGAGCAGTGGAATAGAATTAATACAA  500

seq1  GCTAGGAAAAATAGAGAACAGAAGTGCTTTCTCAGTCTCTACCAGTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAAAATAGAGAACAGAAGTGCTTTCTCAGTCTCTACCAGTTAAA  550

seq1  GATAAAGAAGGTAACCACATTCCACCCCAACCCATATGTTTCTTTCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAAGGTAACCACATTCCACCCCAACCCATATGTTTCTTTCTCCA  600

seq1  AACATCCACACGGCGATTATGGACTGACAACTACAACCATGGGAACGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCACACGGCGATTATGGACTGACAACTACAACCATGGGAACGGTT  650

seq1  AGGTACAAAGCTGGACGACTATAATCTTCCCAAGCAGTTTAAATATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAAGCTGGACGACTATAATCTTCCCAAGCAGTTTAAATATAAAA  700

seq1  ACTACTTTTCCTTATAGATATGTAACAAGTAGAGGAATAAGTGAAACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTTCCTTATAGATATGTAACAAGTAGAGGAATAAGTGAAACAAG  750

seq1  ACCCATTTGGTTGAAAGACGCCAGAGAGAGACAAATACAGAACAGACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTGGTTGAAAGACGCCAGAGAGAGACAAATACAGAACAGACTTT  800

seq1  TTAATGTCAAGCACGCATACTCAAGCTGACAAATACTTAAGTGGTACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTCAAGCACGCATACTCAAGCTGACAAATACTTAAGTGGTACACC  850

seq1  AGCTGGGAAATGATGTAAGAGATACAGTACTAGGGATAGGCCTGCAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGAAATGATGTAAGAGATACAGTACTAGGGATAGGCCTGCAATAT  900

seq1  AACCTATCTATAGCTTCTTCATCGTCCAGCACTTTTTAAAGACTTGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATCTATAGCTTCTTCATCGTCCAGCACTTTTTAAAGACTTGAGAA  950

seq1  TAGCAAGAAAATAATGAAAGTGGGAAGCACAAAAAATATTTTGAGAGGTG  1000
      |||| ||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TAGC-AGAAAATAATGAAAGTGGG-AGCAC-AAAAATATTTTGAGAGGTG  997

seq1  CCCATGAAGAAGTTGAGAACAGGAGGCGGATAACAAATGGCTAGCACTAG  1050
       ||||| |||||||||| ||| |||||||||||| |||||||||||||||
seq2  -CCATG-AGAAGTTGAG-ACA-GAGGCGGATAAC-AATGGCTAGCACTAG  1042

seq1  AGAGCTGACACTCTTATTGGCTCTAGTAAGACAAAAAAAGAAGTCGTTAA  1100
      ||||||||| ||||||||||||||||| ||||||||||   ||||||| |
seq2  AGAGCTGAC-CTCTTATTGGCTCTAGT-AGACAAAAAA--GAGTCGTTTA  1088

seq1  CAATAAAGTAGGGACTGATATATAAGAAAA  1130
      | || ||||| |||||||||| ||||||||
seq2  C-ATTAAGTA-GGACTGATAT-TAAGAAAA  1115

seq1: chr5_46261358_46261686
seq2: B6Ng01-040N11.g_77_405 (reverse)

seq1  TCCACACCTCCTCTTCCTCCTTCCACCTCCTCCTGTGCCCCCTTCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCTCCTCTTCCTCCTTCCACCTCCTCCTGTGCCCCCTTCTCAAA  50

seq1  TTCATAACCTCTGCTTTAATTTTTATTATTACACACACGTGTGTATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACCTCTGCTTTAATTTTTATTATTACACACACGTGTGTATGTGT  100

seq1  GTGTAAATGTTTGCTTTTCAATATTTCTATATCTTTACTGAATTCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATGTTTGCTTTTCAATATTTCTATATCTTTACTGAATTCTGTTT  150

seq1  TTGAATCTTGGATTGCCTTCATTTCATTCATTTGTATATTTGTATTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTTGGATTGCCTTCATTTCATTCATTTGTATATTTGTATTTACT  200

seq1  TGGATATCACTAAGGCTTTCATTGCTAACTATGCTCTTTCAGTTGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCACTAAGGCTTTCATTGCTAACTATGCTCTTTCAGTTGGTGGA  250

seq1  GTTGTTTGTTCCTGTCTTCCCTAAACCCCTTCAAGTTTTGATCGAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTTCCTGTCTTCCCTAAACCCCTTCAAGTTTTGATCGAATTTA  300

seq1  TAATTGGTTCTTTTAAATTCTGTATCCTG  329
      |||||||||||||||||||||||||||||
seq2  TAATTGGTTCTTTTAAATTCTGTATCCTG  329