BAC Information

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BAC

Clone NameB6Ng01-041G16
Chromosome5 (Build37)
Map Location 99,393,507 - 99,532,708
singlet/doubletdoublet
Overlap genePrkg2, LOC100041680
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
Downstream geneRasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041G16.bB6Ng01-041G16.g
ACCDH868087DH868088
length728780
definitionDH868087|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G16, 5' end.DH868088|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,532,196 - 99,532,708)(99,393,507 - 99,394,281)
sequence
gaattcagggcaagcctgagctacacagtgagttggaaaccagcccagac
tgataatgtcactttaaaacccaatggcaacacccgtaaaacaaaaccta
ccaactaagcaacaaaatacattcggcaaaccctaaatttctaagtatta
atctcataagaagatatttagctctaagaattgcttctagggcattcaat
tactcctgtaagttacattgttctttccagaatggcttggtctttggaaa
ctgtctcgggtagagaggggataaaaaaggacagatacccatagagacaa
gctagggatcggtgggtgcactggctgggtttgtgtgtcaacttgacaca
aagtggagttatcacagagaaaggagcctcccttgaggaaatgcctccat
gggatccagctgtaaggcattttctcaattagtgatcaagggtgggaggg
cccattgtgggtggtgccatccctgggctggtagtcctgggttctataag
aaagtaagtgagcaagccaggggaagggccagtaacatccctccatggcc
tcaccatcagctcctgtttcttaacctgcttgagttccagtcctgacttc
ctttgctgatgaacagcaatgtggaagtgtaagttgaatagaccctttcc
tccccgacttgctttctttggtcatgacgtttgtgcaaggagtagaaacc
ctgactaaggcagtgggctttatgtgtt
gaattcttagaggaaactttttctttactctcccatgagctaaagatgag
ataagagcgtctgtctgcacgtactgcctttataacactgatatttgttt
aacctgtttgcctcctgcctctgtagagagttctctagatcattttccca
caatgcccagagctaaggattgctctcctattcctcaatgacacagccac
taaatcaaaattctaggtcattcagatttgctggacacggagctccgatg
acagtactgaggactgatccgagggtttgcctggataaggcagctgctgt
gcaccttggacccttctgtgtacaacgtaaaaaccatccactactgttct
atcttctttcctggccccataggagctcctgcgttgtctaaggaacccct
cagtgcattcccagccctcttcttcatgtcttatctggtatttccaaaca
ttttgtagtgaaagtaattctggatatctagttcaaaatataattggcga
ttgaaaattcaacactgatttttttttagatacctcaaattgctaactgt
ttattttactcattgataaataaatgagaaggctgggtaataattgcaaa
caggaagtccctgccacctagtgccgtaaatactaattatcctctccaag
gattttgggaaaagcaactatgaaaagtaagagatacatttaataaacaa
tctttcaaacctcacgatagttttttctttcttctagaatattccagaga
gttttcccctaaaggctggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_99532196_99532708
seq2: B6Ng01-041G16.b_245_760 (reverse)

seq1  AACACATAAAGCCCACTGCCTTAGTCAGGGTTTCTACTCC-TGCACAAAC  49
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACACATAAAGCCCACTGCCTTAGTCAGGGTTTCTACTCCTTGCACAAAC  50

seq1  GTCATGACCAA--GAAGCAAGTCGGGGAGGAAAGGGTCTATTCAACTTAC  97
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  GTCATGACCAAAGAAAGCAAGTCGGGGAGGAAAGGGTCTATTCAACTTAC  100

seq1  ACTTCCACATTGCTGTTCATCAGCAAAGGAAGTCAGGACTGGAACTCAAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACATTGCTGTTCATCAGCAAAGGAAGTCAGGACTGGAACTCAAG  150

seq1  CAGGTTAAGAAACAGGAGCTGATGGTGAGGCCATGGAGGGATGTTACTGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAAGAAACAGGAGCTGATGGTGAGGCCATGGAGGGATGTTACTGG  200

seq1  CCCTTCCCCTGGCTTGCTCACTTACTTTCTTATAGAACCCAGGACTACCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCCTGGCTTGCTCACTTACTTTCTTATAGAACCCAGGACTACCA  250

seq1  GCCCAGGGATGGCACCACCCACAATGGGCCCTCCCACCCTTGATCACTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGATGGCACCACCCACAATGGGCCCTCCCACCCTTGATCACTAA  300

seq1  TTGAGAAAATGCCTTACAGCTGGATCCCATGGAGGCATTTCCTCAAGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAATGCCTTACAGCTGGATCCCATGGAGGCATTTCCTCAAGGGA  350

seq1  GGCTCCTTTCTCTGTGATAACTCCACTTTGTGTCAAGTTGACACACAAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTTCTCTGTGATAACTCCACTTTGTGTCAAGTTGACACACAAAC  400

seq1  CCAGCCAGTGCACCCACCGATCCCTAGCTTGTCTCTATGGGTATCTGTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGTGCACCCACCGATCCCTAGCTTGTCTCTATGGGTATCTGTCC  450

seq1  TTTTTTATCCCCTCTCTACCCGAGACAGTTTCCAAAGACCAAGCCATTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATCCCCTCTCTACCCGAGACAGTTTCCAAAGACCAAGCCATTCT  500

seq1  GGAAAGAACAATGTAA  513
      ||||||||||||||||
seq2  GGAAAGAACAATGTAA  516

seq1: chr5_99393507_99394281
seq2: B6Ng01-041G16.g_68_847

seq1  GAATTCTTAGAGGAAACTTTTTCTTTACTCTCCCATGAGCTAAAGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGGAAACTTTTTCTTTACTCTCCCATGAGCTAAAGATGAG  50

seq1  ATAAGAGCGTCTGTCTGCACGTACTGCCTTTATAACACTGATATTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGCGTCTGTCTGCACGTACTGCCTTTATAACACTGATATTTGTTT  100

seq1  AACCTGTTTGCCTCCTGCCTCTGTAGAGAGTTCTCTAGATCATTTTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTTTGCCTCCTGCCTCTGTAGAGAGTTCTCTAGATCATTTTCCCA  150

seq1  CAATGCCCAGAGCTAAGGATTGCTCTCCTATTCCTCAATGACACAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCAGAGCTAAGGATTGCTCTCCTATTCCTCAATGACACAGCCAC  200

seq1  TAAATCAAAATTCTAGGTCATTCAGATTTGCTGGACACGGAGCTCCGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAAATTCTAGGTCATTCAGATTTGCTGGACACGGAGCTCCGATG  250

seq1  ACAGTACTGAGGACTGATCCGAGGGTTTGCCTGGATAAGGCAGCTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTGAGGACTGATCCGAGGGTTTGCCTGGATAAGGCAGCTGCTGT  300

seq1  GCACCTTGGACCCTTCTGTGTACAACGTAAAAACCATCCACTACTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGGACCCTTCTGTGTACAACGTAAAAACCATCCACTACTGTTCT  350

seq1  ATCTTCTTTCCTGGCCCCATAGGAGCTCCTGCGTTGTCTAAGGAACCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTCCTGGCCCCATAGGAGCTCCTGCGTTGTCTAAGGAACCCCT  400

seq1  CAGTGCATTCCCAGCCCTCTTCTTCATGTCTTATCTGGTATTTCCAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATTCCCAGCCCTCTTCTTCATGTCTTATCTGGTATTTCCAAACA  450

seq1  TTTTGTAGTGAAAGTAATTCTGGATATCTAGTTCAAAATATAATTGGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTGAAAGTAATTCTGGATATCTAGTTCAAAATATAATTGGCGA  500

seq1  TTGAAAATTCAACACTGATTTTTTTTTAGATACCTCAAATTGCTAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTCAACACTGATTTTTTTTTAGATACCTCAAATTGCTAACTGT  550

seq1  TTATTTTACTCATTGATAAATAAATGAGAAGGCTGGGTAATAATTGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTACTCATTGATAAATAAATGAGAAGGCTGGGTAATAATTGCAAA  600

seq1  CAGGAAGTCCCTGCCACCTAGTGCCGTAAATACTAATTATCCTCTCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCCCTGCCACCTAGTGCCGTAAATACTAATTATCCTCTCCAAG  650

seq1  GATTTTGGG-AAAGCAACTATGAAAAGTAAGAGATACATTTAATAAACAA  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGGAAAAGCAACTATGAAAAGTAAGAGATACATTTAATAAACAA  700

seq1  TC-TTCAAACCTCACGATAG-TTTTTCTTTCTTCTAGAATATTCCAGAGA  747
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTTCAAACCTCACGATAGTTTTTTCTTTCTTCTAGAATATTCCAGAGA  750

seq1  GTTT--CCCTAAAGGCTGGGGGGGGGGGGG  775
      ||||  ||||||||||||||||||||||||
seq2  GTTTTCCCCTAAAGGCTGGGGGGGGGGGGG  780