BAC Information

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BAC

Clone NameB6Ng01-041J07
Chromosome5 (Build37)
Map Location 67,657,603 - 67,658,642
singlet/doubletsinglet
Overlap geneTmem33
Upstream geneNsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b
Downstream geneSlc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041J07.bB6Ng01-041J07.g
ACCDH868202DH868203
length1,0391,173
definitionDH868202|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J07, 5' end.DH868203|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagctcaggacttctggaagagtagccagtgctctcaacctctga
gccatctctccagctctattgagaacatcttcaggctagtatttttacca
ctcatgttgataatctgccatttacttgataggtattctattatccacct
agcaaaaattggatgggatttgtttctattttttcttttgaaaagttgaa
taaaaattttgtatttacccacagtataaggccataccattggacttagt
gtaaaaattccttgctattgtaattaacttgatagaacctgtggtagatt
ttatgcaagctgaggtatacagtcttcttttttacaaattcaggtttttt
ttcttgaaagtatagtttctgaaagtgacgggacttaagccattagcgtc
tgtcaacagtgcaccttcatagcggccctgtggaagactgggattaagat
ccagtcggtgcactggagaggtggcttccatacctgcagcacatccaggt
tcggttcaaatgcctgtaattccagttccaaaggctccaatgcccactgg
cctcctaggacacctgcatgtgtgtggtgaacgtaaactcatgcaggcac
acacaactaaaagtaagaaatcaaaaaacccaaaacgtccattgtggtgt
aaacactgcactccgtcctttggggtggcctgcagtttagttttatttag
gaggtttttatggtgctttattgaaaacgattttgactttccagacagct
ggaaagctttagaaaagaagttatttccttctaggtggcaaaacttcatt
tgattgaaagatgaaggaaaaagccattccactaagctcagtcaggtgtt
gcttcagctcctttgcacgtaatacatagccatgtacatgtgtgcgcacc
gtgcctggtgacatgaggctttccttaatggctctcaagtgagtattttt
ccagtcttgttattttctttgctccatgctgcacatacactaagaaggtc
ctggacgtaagtaaactgttgttttcgttgccttgagat
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccacctcacaccagtcagaatagctaagatgaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagctaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgagtgtggacactatgcccctccttagaagtgggaac
aaaacacccttggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttatcgaaag
gactcagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcactgtcagctaatggatggatcacaggctcctaat
ggaagagctagagaaagtacctaaggagctaaagggatctgcaacctata
gttgaacaacattatgaactactagtactccgagctcttgactctagctt
catttgtttcaaaagatggctagttggcatcactgaaagagagccattgg
gacgccgacttttatatgcctcagtacggtatacgccaggtccaaaaagg
gatgatggtggtgagcatggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67657603_67658642
seq2: B6Ng01-041J07.b_49_1087

seq1  GAATTCAGCTCAGGACTTCTGGAAGAGTAGCCAGTGCTCTCAACCTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAGGACTTCTGGAAGAGTAGCCAGTGCTCTCAACCTCTGA  50

seq1  GCCATCTCTCCAGCTCTATTGAGAACATCTTCAGGCTAGTATTTTTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTCCAGCTCTATTGAGAACATCTTCAGGCTAGTATTTTTACCA  100

seq1  CTCATGTTGATAATCTGCCATTTACTTGATAGGTATTCTATTATCCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTGATAATCTGCCATTTACTTGATAGGTATTCTATTATCCACCT  150

seq1  AGCAAAAATTGGATGGGATTTGTTTCTATTTTTTCTTTTGAAAAGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATTGGATGGGATTTGTTTCTATTTTTTCTTTTGAAAAGTTGAA  200

seq1  TAAAAATTTTGTATTTACCCACAGTATAAGGCCATACCATTGGACTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTTGTATTTACCCACAGTATAAGGCCATACCATTGGACTTAGT  250

seq1  GTAAAAATTCCTTGCTATTGTAATTAACTTGATAGAACCTGTGGTAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATTCCTTGCTATTGTAATTAACTTGATAGAACCTGTGGTAGATT  300

seq1  TTATGCAAGCTGAGGTATACAGTCTTCTTTTTTACAAATTCAGGTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAAGCTGAGGTATACAGTCTTCTTTTTTACAAATTCAGGTTTTTT  350

seq1  TTCTTGAAAGTATAGTTTCTGAAAGTGACGGGACTTAAGCCATTAGCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAAGTATAGTTTCTGAAAGTGACGGGACTTAAGCCATTAGCGTC  400

seq1  TGTCAACAGTGCACCTTCATAGCGGCCCTGTGGAAGACTGGGATTAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACAGTGCACCTTCATAGCGGCCCTGTGGAAGACTGGGATTAAGAT  450

seq1  CCAGTCGGTGCACTGGAGAGGTGGCTTCCATACCTGCAGCACATCCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCGGTGCACTGGAGAGGTGGCTTCCATACCTGCAGCACATCCAGGT  500

seq1  TCGGTTCAAATGCCTGTAATTCCAGTTCCAAAGGCTCCAATGCCCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTCAAATGCCTGTAATTCCAGTTCCAAAGGCTCCAATGCCCACTGG  550

seq1  CCTCCTAGGACACCTGCATGTGTGTGGTGAACGTAAACTCATGCAGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGACACCTGCATGTGTGTGGTGAACGTAAACTCATGCAGGCAC  600

seq1  ACACAACTAAAAGTAAGAAATCAAAAAACCCAAAACGTCCATTGTGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTAAAAGTAAGAAATCAAAAAACCCAAAACGTCCATTGTGGTGT  650

seq1  AAACACTGCACTCCGTCCTTTGGGGTGGCCTGCAGTTTAGTTTTATTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGCACTCCGTCCTTTGGGGTGGCCTGCAGTTTAGTTTTATTTAG  700

seq1  GAGGTTTTTATGGTGCTTTATTGAAAACGATTTTGACTTTCCAGACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTTATGGTGCTTTATTGAAAACGATTTTGACTTTCCAGACAGCT  750

seq1  GGAAAGCTTTAGAAAAGAAGTTATTTCCTTCTAGGTGGCAAAACTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTTTAGAAAAGAAGTTATTTCCTTCTAGGTGGCAAAACTTCATT  800

seq1  TGATTGAAAGATGAAGG-AAAAGCCATTCCACTAAGCTCAGTCAGGTGTT  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGATTGAAAGATGAAGGAAAAAGCCATTCCACTAAGCTCAGTCAGGTGTT  850

seq1  GCTTCAGCTCCTTTGCACGTAATACATAGCCATGTACATGTGTGCGCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCTCCTTTGCACGTAATACATAGCCATGTACATGTGTGCGCACC  900

seq1  GTGCCTGGTGACATGAGGCTTTCCTTAATGGCTCTCCAGTGAGTATTTTT  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGCCTGGTGACATGAGGCTTTCCTTAATGGCTCTCAAGTGAGTATTTTT  950

seq1  CCAGTCTTGTTATTTTCTTTGCTCCATGCTGCCACATACACTAAGAAGGT  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAGTCTTGTTATTTTCTTTGCTCCATGCTG-CACATACACTAAGAAGGT  999

seq1  CCTGGACGTAAGTAAACTGTTGTTTTCGTTGCCTTGTAGAT  1040
      |||||||||||||||||||||||||||||||||||| ||||
seq2  CCTGGACGTAAGTAAACTGTTGTTTTCGTTGCCTTG-AGAT  1039