BAC Information

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BAC

Clone NameB6Ng01-041L23
Chromosome5 (Build37)
Map Location 46,556,304 - 46,557,387
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041L23.bB6Ng01-041L23.g
ACCDH868320DH868321
length1,1281,079
definitionDH868320|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L23, 5' end.DH868321|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccatttttaatggggtttttgaattt
caggagtccagcttcttgagctctttgtatatattggatattagtcccct
ataaggtttaggattggtaaaaatcctttcccaatcttctggtggccatt
ttgttttactgacagtgtctttggccttacagaagttttgcaacattatg
aggtcccatttgtagattcttgatcttatagtacaagccattgctcttct
gtttaggaatttgtcccctgtgcccatatcttcgaggctcccccccccct
attaatttcagtgtctctggctttatttggaggtctttgaaccacttaga
cttgaatgttgtacaaggagataagaatggatcaattcacattcttctac
atgataactgccagttgtgccaggagcatttgttgaaaatgctgtctttc
cccccaccccccactggatggtttagctcctttttcaaagatcaagtgat
cttaggtgtgtggattcatttctggatcttcaactctattccattgatct
acctgtctgtcgctgtatcaataccatgctgtttttatcacaattgctct
gtagtactgcttaaggtcaggcatggtgatttcaccagaggttcttttat
tgttgagaatagcttttgctatcctaggtttttttattgttccagatgaa
tttgcaaattgccctgtctaacaaagtgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatagccattttt
actatattaatcctgccaatccatgagcatgggagatctttccatctttc
tgggatcttcttcaatttctttcttcagagacttgaagttcttatcatac
agatttttcacttccttagttagagtcacaccaatgtatttattattatt
tgttactattgtgaagggtgttgatttgtttgaagttaattttatatccc
gatactgcactggaactggtttatcaggttaagaattctcctgggagatt
tttaggatactctataatatcatcatatcattgtaaaatatagatatttt
attttcttctcttcaccttggttcccct
gaattcacaaatgtgaggaaagtttcatttgagaaattgttgcagctata
tgaccaaaccctgtcatcagaagtgtctgatggactcatgggctcatgag
acatttcaattttggctataagctggtttctaaaggtaataataataatt
aataataacagcataataataaatgttttacttctaatagattattttaa
atatttagtataataaatgaaggtatcatattgtcacatgttgatacatt
cacaattttcagaacaggggccctctccttttcaatatcaggagctaaaa
attaatttggccaattcttttgaccttttccctctccctagctaaagcac
aagttttattcagatctcagaaggcaactaatgttattgaaaaaaatcat
agtttttatgtatctagttataatataaattataatagtaataataatta
taattattattttacttaaggtattcttgagctattctcaggaaacacct
ggcaatcaacagttggagagcaaggtggtctgcgggctgtggtattcatg
cttatttattgtctgatatcatctctgagttggtttctggcattattcaa
ttatttgtttataatggttaataaatgtaggcattgtctagcctgctgtc
agccagaggccctcccagcctttccattttctagggtgtggttttcattt
gggcctgtcccacgtggcaatgagggcagttggtggttcctgggtgctgt
ctatttcacaaagtggtctgctgtctgcaggagtctgagcgtacttttcc
ccatgaggacctacgctgctgagctgagagcctttgcacagttactatcg
cctcataatgggctgatgtttctctccatcagacaaacacaaatagtgct
ttgtggtgagagaggacagcaggtggtaacttcttcaggaggaaaccagc
tgcaattgtgggatgccaaatacatcttgttgaaaaataaaccatagcaa
tgaaaagaagggagctgactattgttgtaaacgaggataaattcccaagt
taaacctgatgtattcaggtcttctgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46556304_46557387
seq2: B6Ng01-041L23.g_71_1149

seq1  GAATTCACAAATGTGAGGAAAGTTTCATTTGAGAAATTGTTGCAGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAATGTGAGGAAAGTTTCATTTGAGAAATTGTTGCAGCTATA  50

seq1  TGACCAAACCCTGTCATCAGAAGTGTCTGATGGACTCATGGGCTCATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAACCCTGTCATCAGAAGTGTCTGATGGACTCATGGGCTCATGAG  100

seq1  ACATTTCAATTTTGGCTATAAGCTGGTTTCTAAAGGTAATAATAATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAATTTTGGCTATAAGCTGGTTTCTAAAGGTAATAATAATAATT  150

seq1  AATAATAACAGCATAATAATAAATGTTTTACTTCTAATAGATTATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACAGCATAATAATAAATGTTTTACTTCTAATAGATTATTTTAA  200

seq1  ATATTTAGTATAATAAATGAAGGTATCATATTGTCACATGTTGATACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTATAATAAATGAAGGTATCATATTGTCACATGTTGATACATT  250

seq1  CACAATTTTCAGAACAGGGGCCCTCTCCTTTTCAATATCAGGAGCTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTTCAGAACAGGGGCCCTCTCCTTTTCAATATCAGGAGCTAAAA  300

seq1  ATTAATTTGGCCAATTCTTTTGACCTTTTCCCTCTCCCTAGCTAAAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTGGCCAATTCTTTTGACCTTTTCCCTCTCCCTAGCTAAAGCAC  350

seq1  AAGTTTTATTCAGATCTCAGAAGGCAACTAATGTTATTGAAAAAAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTATTCAGATCTCAGAAGGCAACTAATGTTATTGAAAAAAATCAT  400

seq1  AGTTTTTATGTATCTAGTTATAATATAAATTATAATAGTAATAATAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATGTATCTAGTTATAATATAAATTATAATAGTAATAATAATTA  450

seq1  TAATTATTATTTTACTTAAGGTATTCTTGAGCTATTCTCAGGAAACACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTATTTTACTTAAGGTATTCTTGAGCTATTCTCAGGAAACACCT  500

seq1  GGCAATCAACAGTTGGAGAGCAAGGTGGTCTGCGGGCTGTGGTATTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAACAGTTGGAGAGCAAGGTGGTCTGCGGGCTGTGGTATTCATG  550

seq1  CTTATTTATTGTCTGATATCATCTCTGAGTTGGTTTCTGGCATTATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATTGTCTGATATCATCTCTGAGTTGGTTTCTGGCATTATTCAA  600

seq1  TTATTTGTTTATAATGGTTAATAAATGTAGGCATTGTCTAGCCTGCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTATAATGGTTAATAAATGTAGGCATTGTCTAGCCTGCTGTC  650

seq1  AGCCAGAGGCCCTCCCAGCCTTTCCATTTTCTAGGGTGTGGTTTTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGGCCCTCCCAGCCTTTCCATTTTCTAGGGTGTGGTTTTCATTT  700

seq1  GGGCCTGTCCCACGTGGCAATGAGGGCAGTTGGTGGTTCCTGGGTGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGTCCCACGTGGCAATGAGGGCAGTTGGTGGTTCCTGGGTGCTGT  750

seq1  CTATTTCACAAAGTGGTCTGCTGTCTGCAGGAGTCTGAGCGTACTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCACAAAGTGGTCTGCTGTCTGCAGGAGTCTGAGCGTACTTTTCC  800

seq1  CCATGAGGACCTAGGCTGCTGAGCTGAGAGCCTTTGCACAGTTACTATCG  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGACCTACGCTGCTGAGCTGAGAGCCTTTGCACAGTTACTATCG  850

seq1  CCTCATAATGGGCTGATGTTTCTCTCCATCAGACAAACACAAATAGTGC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTCATAATGGGCTGATGTTTCTCTCCATCAGACAAACACAAATAGTGCT  900

seq1  TTGTGGTGAGAGAGGACAGCAGGTGGTAACTTCTGCAAGAGGAAACCAGC  949
      |||||||||||||||||||||||||||||||||| || ||||||||||||
seq2  TTGTGGTGAGAGAGGACAGCAGGTGGTAACTTCTTCAGGAGGAAACCAGC  950

seq1  TGCAATTGT-GGATGCCAAATACAATCTTGTTGAAGAAATAAACCATAGC  998
      ||||||||| ||||||||||||| ||||||||||| ||||||||||||||
seq2  TGCAATTGTGGGATGCCAAATAC-ATCTTGTTGAA-AAATAAACCATAGC  998

seq1  AATGAAAAGAGGGAGGCTGACTTACTGTTGTAAACCGAAGATGAAATTCC  1048
      |||||||||| ||  |||||| || ||||||||| ||| ||| |||||||
seq2  AATGAAAAGAAGGGAGCTGAC-TATTGTTGTAAA-CGAGGAT-AAATTCC  1045

seq1  CAAGTTAAATCTGAATGTATTCATGTTCTTCTGTAT  1084
      ||||||||| ||| ||||||||| | ||||||||||
seq2  CAAGTTAAACCTG-ATGTATTCA-GGTCTTCTGTAT  1079