BAC Information

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BAC

Clone NameB6Ng01-042A21
Chromosome5 (Build37)3 (Build37)
Map Location 18,084,511 - 18,084,57590,914,158 - 90,915,325
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042A21.bB6Ng01-042A21.g
ACCDH868541DH868542
length8971,156
definitionDH868541|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A21, 5' end.DH868542|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(90,914,158 - 90,915,325)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtgaatgtggagaaataggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacgtgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gccactcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtttggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccagggctagcaa
gaattcctatggattggatgttttacttatggaggcaagctagacatggg
catgaacttcttcacaaacatttgaattgtgcaaatttccttatatttct
aatcaagaaagtgacccttgggaggcagatggagtattattcagtcctgg
aagtcccttttatagagtgaacagaatcatgttgtcagtgacctgcaggg
cttttgacctctctatctcttttggtttcctgtgaatataagacaatgtt
gactggacctcttgtcttaaccagtttggccttatgggatgggggaaagt
tttattaattcttgcctgaattgcttttattgagtgacaactgtccttaa
gtcaaatgacagatatggtccttagtgttctctttcctaaaggctggtgt
agcttagatgttttgtggcatttctctggaggaaacaaatcactgcttaa
attgtaatcttatcattttctgacacattccataaatcataacatgatct
ttgtagttcactttaatacaagttaacattttcattttttgacaaactat
agttctaggaaatcatttattatgtcaaggacagtgttttcaggagtatg
aggcatttcgttattttttttgtagccaggaaagtggtgaatgaatgaaa
gtattcaactagggttctcttttttatcaagtacaagcacaataattggt
ttctcaatttacagtgagccctcctacctcagttcagctagtccagatta
tccctcacaagcttgaatattcaataattctggattctgttaaaccaaaa
taaaagattacgcattatatataccaactgcatataatttaaaatagtat
ttatattaaaatggtagctactatgtcaccctaatttaacaacctccaca
ttttatcacgataattatctgaattatgcttaaacctcagtaagaagtca
tgtcacattcataaataaataacattccctcatgaatcagaataaattta
tttcaaatatattatgatttatgagctccataaagtgattcctatgtgat
ctaatttccagtgaataaagttggatgaattaaagattgagtttttaata
tttatttcaaaattatttaaccaggtggcctgtgagtgatgatgtgagtg
cataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-042A21.b_361_425 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCACGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65

seq1: chr3_90914158_90915325
seq2: B6Ng01-042A21.g_61_1216

seq1  GAATTCCTATGGATTGGATGTTTTACTTATGGAGGCAAGCTAGACATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGGATTGGATGTTTTACTTATGGAGGCAAGCTAGACATGGG  50

seq1  CATGAACTTCTTCACAAACATTTGAATTGTGCAAATTTCCTTATATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTTCTTCACAAACATTTGAATTGTGCAAATTTCCTTATATTTCT  100

seq1  AATCAAGAAAGTGACCCTTGGGAGGCAGATGGAGTATTATTCAGTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAAAGTGACCCTTGGGAGGCAGATGGAGTATTATTCAGTCCTGG  150

seq1  AAGTCCCTTTTATAGAGTGAACAGAATCATGTTGTCAGTGACCTGCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTTTTATAGAGTGAACAGAATCATGTTGTCAGTGACCTGCAGGG  200

seq1  CTTTTGACCTCTCTATCTCTTTTGGTTTCCTGTGAATATAAGACAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACCTCTCTATCTCTTTTGGTTTCCTGTGAATATAAGACAATGTT  250

seq1  GACTGGACCTCTTGTCTTAACCAGTTTGGCCTTATGGGATGGGGGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGACCTCTTGTCTTAACCAGTTTGGCCTTATGGGATGGGGGAAAGT  300

seq1  TTTATTAATTCTTGCCTGAATTGCTTTTATTGAGTGACAACTGTCCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATTCTTGCCTGAATTGCTTTTATTGAGTGACAACTGTCCTTAA  350

seq1  GTCAAATGACAGATATGGTCCTTAGTGTTCTCTTTCCTAAAGGCTGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGACAGATATGGTCCTTAGTGTTCTCTTTCCTAAAGGCTGGTGT  400

seq1  AGCTTAGATGTTTTGTGGCATTTCTCTGGAGGAAACAAATCACTGCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGATGTTTTGTGGCATTTCTCTGGAGGAAACAAATCACTGCTTAA  450

seq1  ATTGTAATCTTATCATTTTCTGACACATTCCATAAATCATAACATGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATCTTATCATTTTCTGACACATTCCATAAATCATAACATGATCT  500

seq1  TTGTAGTTCACTTTAATACAAGTTAACATTTTCATTTTTTGACAAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTCACTTTAATACAAGTTAACATTTTCATTTTTTGACAAACTAT  550

seq1  AGTTCTAGGAAATCATTTATTATGTCAAGGACAGTGTTTTCAGGAGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGGAAATCATTTATTATGTCAAGGACAGTGTTTTCAGGAGTATG  600

seq1  AGGCATTTCGTTATTTTTTTTGTAGCCAGGAAAGTGGTGAATGAATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTCGTTATTTTTTTTGTAGCCAGGAAAGTGGTGAATGAATGAAA  650

seq1  GTATTCAACTAGGGTTCTCTTTTTTATCAAGTACAAGCACAATAATTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAACTAGGGTTCTCTTTTTTATCAAGTACAAGCACAATAATTGGT  700

seq1  TTCTCAATTTACAGTGAGCCCTCCTACCTCAGTTCAGCTAGTCCAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTTACAGTGAGCCCTCCTACCTCAGTTCAGCTAGTCCAGATTA  750

seq1  TCCCTCACAAGCTTGAATATTCAATAATTCTGGATTCTGTTAAACCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACAAGCTTGAATATTCAATAATTCTGGATTCTGTTAAACCAAAA  800

seq1  TAAAAGATTACGCATTATATATACCAACTGCATATAATTTAAAATAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATTACGCATTATATATACCAACTGCATATAATTTAAAATAGTAT  850

seq1  TTATATTAAAATGGTAGCTACTATGTCACCCTAATTTAACAACCTCCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAAAATGGTAGCTACTATGTCACCCTAATTTAACAACCTCCACA  900

seq1  TTTTATCACGATAATTATCTGAATTATGCTTAAA-CTCAGTAAGAAGTCA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTATCACGATAATTATCTGAATTATGCTTAAACCTCAGTAAGAAGTCA  950

seq1  TGTCACATTCATAAATAAATAACATTCCCTCATGAATCAGATTAAATTTA  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCACATTCATAAATAAATAACATTCCCTCATGAATCAGAATAAATTTA  1000

seq1  TATC-AATATATTATGATTTATGAGCT-CATAAAGTGATTCCATATGT-A  1046
      | || |||||||||||||||||||||| |||||||||||||| ||||| |
seq2  TTTCAAATATATTATGATTTATGAGCTCCATAAAGTGATTCC-TATGTGA  1049

seq1  TCTAATTCTCAGTGAATAAAGTTTGATGAATTAAATAGATTTGAGTTTTA  1096
      |||||||  |||||||||||||| ||||||||||| |   ||||||||| 
seq2  TCTAATTTCCAGTGAATAAAGTTGGATGAATTAAAGA---TTGAGTTTT-  1095

seq1  TAATTATTTATTTTAAAATATTATTTTAAACCATGTGTAAGCATGTGAAT  1146
      ||| ||||||||| |||  |||||||  ||||| |||   || ||||| |
seq2  TAA-TATTTATTTCAAA--ATTATTT--AACCAGGTG---GCCTGTGAGT  1137

seq1  GTATGTATGTGAGTGCAATAAC  1168
      | ||| |||||||||| |||||
seq2  G-ATG-ATGTGAGTGC-ATAAC  1156