BAC Information

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BAC

Clone NameB6Ng01-042B16
Chromosome5 (Build37)
Map Location 15,645,741 - 15,645,915
singlet/doubletsinglet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042B16.bB6Ng01-042B16.g
ACCDH868574DH868575
length1,238939
definitionDH868574|Mus musculus domesticus DNA, BAC clone: B6Ng01-042B16, 5' end.DH868575|Mus musculus domesticus DNA, BAC clone: B6Ng01-042B16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacattcctatgtacaaagaaggtttctgaaagctcagtggtgga
aggtagaggcaggaagatttatatggatttcctggtcatctttctttgac
aattggtgagttctagattcaatgtgacacccaatctcagtaaagcaagg
tggggagagttaaatgaagacacctaaggtatcttccagactccatagta
tagacaaaggtatttgcacatgcagcaaatgcatgcatacagcacataca
atacatacatacatacatacatacatacatacatacatacatatgtacat
acatacacacacacacacacacacacacacacacacacacacacacacac
acctatccatacacaaaagagaataagcgttgtatggatttcatagtagg
cccctggaagaccactccagaggggtcttttgtttccccaactctaaact
tccctgatggcaaagttagaatctggtgggagaggatatccactgaaaat
atttccaggtagaggctttagggtttagacttccttaaggcaacagaaaa
tattcagaaaaaaacataaattaatcacaaatattgtgaaggaaggcttg
agaatgagatgtacatatttatggaaaacattggcacattccttagagtc
tataaggtcacatactaccagggttaaatgtatacttaggaaacatctgg
aaaaaagagcagatgtctttacatctttacgaaaagagactttaagagtc
tacacaagcagaatacttttctttgaatgttgcaaaaacagtgtttatgt
gcattaaattatacatggagatacatgggagagattagattgtatctgat
tttaggcatttgaggaaacttctgcattcatacgataggtgtctaccaag
ctgacaaacagacttcaatggtcccaaacaaagacatgaatacaaacaca
tagatgatattcagatatacactaaatgatacagaaatgtggtacattta
cacatggagtactactcagcttttaaaaagaatgaatttatgaaattcct
aggcaaatggatggacctggagggcatcattcttgagtgaggtactcatt
ccaaaagaactccatgaaattggtactcctgtataatggatatcagccga
acttgaattccagaatataagaaaacttgccaacttggactctgggaaac
cagaacaaggtggtaaaccttttgcctttgtgaatttg
gaattcaaggtccatacctaaatataataaaagcaatgtaaagcaagcca
atagccaacataaaattaaatggagagaaacctgaagcaattccactaaa
atggactagacaaggctgcatacactttccctatcaattcagtagagtac
ttgatgttttagccagagaaattaggcaacaaaaggagatcaaagggata
caaattggaaaggaggaattccagatattattatttgtggatgatatggt
aatatatataagtgactccaaaaaaatatccacgagagaacccctacagc
taataaacaacttcagcaaagtggccagatacataattaactcaaacaaa
tcagtagctttcctctactcaaaggataaacaggctgagaaagaagttgg
agaaatgacatcctttaaaatagtcacaaataatataaaatatcttggtg
tgatgctaaccaagcaagtgaaagatctgtatgacaagaacttcaagact
ctgatgaaagaaattgaagacctcagaagatggaaagatctcccatgctc
atggatctgcaggattggcatagtaaaactggtcatcttgctgaaagcaa
tctacagtttcaaggcaatccccatcaaaattccaacttagatcttcacc
gagatagaaagagccattctcaaatttatctggaataacaaaaaacccag
aatagcaaaaaacattctcaacaatagaacttctgggggaatcgccatcc
ctgacctcaagctatactacagaccaattgtaattaaaaacaaaacaaaa
caaaacaaaacaaacaaaacaagacaagacaagacagacaagacaagaca
gacaagacaagacatggtattggtaaagaaacaggcaggtagattagtgg
aatagaattgaagacccagaatgaaattagccacctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15645741_15645915
seq2: B6Ng01-042B16.g_663_834

seq1  CAATCTACAGATTCAATTCAATCCCCATCAAAATTCCAACTAAATTCTTC  50
      |||||||||| |||||  ||||||||||||||||||||||| |  |||||
seq2  CAATCTACAGTTTCAAGGCAATCCCCATCAAAATTCCAACTTAGATCTTC  50

seq1  TCAGATTTAGAAAAGAAAATTTTCAAATTCATCTGGAATAGCAAAAATCC  100
       | ||  ||||||     ||| ||||||| |||||||||| |||||| ||
seq2  ACCGAGATAGAAAGAGCCATTCTCAAATTTATCTGGAATAACAAAAAACC  100

seq1  TAGGATAGCAAAAACTATTCTCAACAATAAAAGAACCTCTGGGGGAATCA  150
       || ||||||||||  ||||||||||||   ||||| |||||||||||| 
seq2  CAGAATAGCAAAAAACATTCTCAACAAT---AGAACTTCTGGGGGAATCG  147

seq1  CCATCCCTGACCTCAAGCTTTACTA  175
      ||||||||||||||||||| |||||
seq2  CCATCCCTGACCTCAAGCTATACTA  172