BAC Information

Click to search

BAC

Clone NameB6Ng01-042L19
Chromosome5 (Build37)
Map Location 135,299,106 - 135,401,230
singlet/doubletdoublet
Overlap geneWbscr28, Cldn13
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
Downstream geneWbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042L19.bB6Ng01-042L19.g
ACCDH869018DH869019
length1,1361,115
definitionDH869018|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L19, 5' end.DH869019|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,299,106 - 135,299,826)(135,400,123 - 135,401,230)
sequence
gaattctttggatttttcttttaagctccgtaaccggcttagagagcgcg
cctgggtatgattaaaacctcgcgtagactgattcatctcagaaaaaatg
tgcaaaacaatgtttgttgtattaagaaaaatattcaatttcaatattaa
atgttaagcctgcatctctgagctctaagtcaacctttcttttccttggg
gtgctaaaagtttaatatcttcatctgttgtgtggtcttggtgagaaacc
taaatcccaagacattttgtgtctttgatcatcaaatatctagcaattct
ctcttaatgcaagaaaaatcctgagtggcagtgaacagctccagaactct
ctgtaacactctacaactcatccagatgcatccgcaaaggacagggactc
attagagccatggttttatttccctgtggcttaaactattttttttttca
gattaggctaaacatttctttgacagatataaaagatgaatacatgtgtc
tatttactcatataattaatggttaaatttttaggcaacaaattgatttt
taatttttttaaaagatgtattttattcatatgagtacactgtcactgtc
ttcagacacactagacgagaacattggatcccattacggatggtcatgag
ccgccatgtggttgctgggaattgaaggcaggacctctggaagagcagcc
agtgctcttaaccactgagccatctctccagcccgattttttaattgttt
actatggaagtaatttgacacaaaatgtgacaaaaggattaattgactgc
agccagaaatatagctcagtagtagaggccctgcctagaatcccccaggg
aggggctgggggcgtggctcagtggtagagcatttgtctatcatgtacaa
ggcccacatttcattctaataccaccaaagtactagttatatatttaaag
ttttgctcatataatttacacttagtatatagtatttataattaaaattt
gagctgcagagatggttcagagatggataaaaaagtacttgctacagact
gatgctctgagtcaatccttggacccatatagtagagggaggaacaactc
tctgagtgtctctggctggcatgatgcatggtacac
gaattctggcacgacagggtttagccaccacagctggctaagcaatgcca
gggataaggctagagcttttgatccatgttaggaatgtactctacccact
gtaccaggtcgctggccgcagaggggtttcttgatactgcatggtgactc
ttgcctaaggtccttgggatacctttgttggcttggattcagataatcat
agaaaggttagcatgctggtggcctacaagagaaatgaactcctgcctcc
atcctgccccctgctgatataaaccctgctgtcaggaaggaagttcctta
aaatccctggttttcaagaaactttgtagattaggctggcttcaaactca
ctgagatccatctgcctggcaggaaggcagttctgtgggcaagtttgtta
ccctgtctgttccagtctctggagactcttcctggtggcagcagcagctc
agaaggacttctgttgctcagcgcaaactgtgccatggtttcccaatggc
ggcaggcggcggtggatgtctttctggtcacgaagggctgggtgtgcacc
atactgagctgtcttttacccaactggtaggtgatagagttttccggtag
ttatatcatcagagcatcaactatctggaagggcctgtggaagacctgtg
tggcacacaacattccccagactcagtgcaaggcatacgactccttgcag
gaccttcctgaatcttggtagaagtctcaggtcctcatggtcacgtgtgt
catcgccgctagactgggtttgcttctgtgcatggtcagaagcaagtgtt
tgaagtatgtggagaaaggagagcaccaaagtcaagatcaggatgtgggc
aggagcagcgtgcctgctggctggcctgctagtgatggtgagtgtgtcct
gggtaatgcatgacatcatgcaagaactctccagccagctgataccctct
gtgcagaaggaaagattggtactgcactcttcgtggattgctgcttctta
ggaggacccctgctttttctgcaactgcccaccccctcactgacttatca
tcacttcagccaggtatcatgccgcccgctccaacaggcggctgtagcag
tggctctcaaccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135299106_135299826
seq2: B6Ng01-042L19.b_475_1179

seq1  TAAACTATTTTTTTTTTCAGATTAGGCTAAACATTTCTTTGACAGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTTTTTTTTTCAGATTAGGCTAAACATTTCTTTGACAGATATA  50

seq1  AAAGATGAATACATGTGTCTATTTACTCATATAATTAATGGTTAAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAATACATGTGTCTATTTACTCATATAATTAATGGTTAAATTTT  100

seq1  TAGGCAACAAATTGATTTTTAATTTTTTTAAAAGATGTATTTTATTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAACAAATTGATTTTTAATTTTTTTAAAAGATGTATTTTATTCATA  150

seq1  TGAGTACACTGTCACTGTCTTCAGACACACTAGACGAGAACATTGGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACACTGTCACTGTCTTCAGACACACTAGACGAGAACATTGGATCC  200

seq1  CATTACGGATGGTCATGAGCCGCCATGTGGTTGCTGGGAATTGAAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACGGATGGTCATGAGCCGCCATGTGGTTGCTGGGAATTGAAGGCAG  250

seq1  GACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAG  300

seq1  CCCGATTTTTTAATTGTTTACTATGGAAGTAATTTGACACAAAATGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATTTTTTAATTGTTTACTATGGAAGTAATTTGACACAAAATGTGAC  350

seq1  AAAAGGATTAATTGACTGCAGCCAGAAATATAGCTCAGTAGTAGAGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATTAATTGACTGCAGCCAGAAATATAGCTCAGTAGTAGAGGCCC  400

seq1  TGCCTAGAATCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGAATCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGC  450

seq1  ATTTGTCTATCATGTACAAGGCCCACATTTCAATTCTAATACCACCAAAG  500
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTGTCTATCATGTACAAGGCCCACATTTC-ATTCTAATACCACCAAAG  499

seq1  TACTAGTTATATATTTAAAGTTTTGCTCATATAATTTACAACTTTAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||   |||| ||
seq2  TACTAGTTATATATTTAAAGTTTTGCTCATATAATTTACA--CTTAG-TA  546

seq1  TAATAGTATTTATAATTAAAATTTGAGCTGCAGAGATGGTTCAGAGATGG  600
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ATAGTATTTATAATTAAAATTTGAGCTGCAGAGATGGTTCAGAGATGG  595

seq1  AT-AAAAAGTACTTGCTACCAAGACTGATGCTCTGAGTTCAATCCCTGGA  649
      || ||||||||||||||||  |||||||||||||||| ||||||| ||| 
seq2  ATAAAAAAGTACTTGCTAC--AGACTGATGCTCTGAG-TCAATCCTTGG-  641

seq1  ACCCATATAGTAGAGGGAAGGAACCAACTC-CTGAAAGTTGTCCTCTGGC  698
      ||||||||||||||||| ||||| |||||| ||||  ||    |||||| 
seq2  ACCCATATAGTAGAGGG-AGGAA-CAACTCTCTGAGTGT----CTCTGG-  684

seq1  CTGGCATGTATGGCATGGCACAC  721
      |||||||| || |||||| ||||
seq2  CTGGCATG-AT-GCATGGTACAC  705

seq1: chr5_135400123_135401230
seq2: B6Ng01-042L19.g_68_1182 (reverse)

seq1  GAAGGTTGAG-GCCACTGCTACAGACG-CTGTTGGAGCTGGCGGCATGAT  48
      |||||||||| ||||||||||||| || |||||||||| |||||||||||
seq2  GAAGGTTGAGAGCCACTGCTACAGCCGCCTGTTGGAGCGGGCGGCATGAT  50

seq1  ACCTGGCTG-AGTGATGAT-AGTCAGTGA-GGGGTGGGCAGTTGCAG-AA  94
      ||||||||| ||||||||| ||||||||| ||||||||||||||||| ||
seq2  ACCTGGCTGAAGTGATGATAAGTCAGTGAGGGGGTGGGCAGTTGCAGAAA  100

seq1  GAGCAGGGGTCCTCCT-AGAAGCAGCAATCCACGAAGAGTGCAGTACCAA  143
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGCAGGGGTCCTCCTAAGAAGCAGCAATCCACGAAGAGTGCAGTACCAA  150

seq1  TCTTTCCCTTCTGCACAGAGGGTATCAGCTGGCTGGAGAGTTCTTGCATG  193
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTT-CCTTCTGCACAGAGGGTATCAGCTGGCTGGAGAGTTCTTGCATG  199

seq1  ATGTCATGCATTACCCAGGACACACTCACCATCACTAGCAGGCCAGCCAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGCATTACCCAGGACACACTCACCATCACTAGCAGGCCAGCCAG  249

seq1  CAGGCACGCTGCTCCTGCCCACATCCTGATCTTGACTTTGGTGCTCTCC-  292
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGGCACGCTGCTCCTGCCCACATCCTGATCTTGACTTTGGTGCTCTCCT  299

seq1  TTCTCCACATACTTCAAACACTTGCTTCTGACCATGCACAGAAGCAAACC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACATACTTCAAACACTTGCTTCTGACCATGCACAGAAGCAAACC  349

seq1  CAGTCTAGCGGCGATGACACACGTGACCATGAGGACCTGAGACTTCTACC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAGCGGCGATGACACACGTGACCATGAGGACCTGAGACTTCTACC  399

seq1  AAGATTCAGGAAGGTCCTGCAAGGAGTCGTATGCCTTGCACTGAGTCTGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCAGGAAGGTCCTGCAAGGAGTCGTATGCCTTGCACTGAGTCTGG  449

seq1  GGAATGTTGTGTGCCACACAGGTCTTCCACAGGCCCTTCCAGATAGTTGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTGTGTGCCACACAGGTCTTCCACAGGCCCTTCCAGATAGTTGA  499

seq1  TGCTCTGATGATATAACTACCGGAAAACTCTATCACCTACCAGTTGGGTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGATGATATAACTACCGGAAAACTCTATCACCTACCAGTTGGGTA  549

seq1  AAAGACAGCTCAGTATGGTGCACACCCAGCCCTTCGTGACCAGAAAGACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCTCAGTATGGTGCACACCCAGCCCTTCGTGACCAGAAAGACA  599

seq1  TCCACCGCCGCCTGCCGCCATTGGGAAACCATGGCACAGTTTGCGCTGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCGCCGCCTGCCGCCATTGGGAAACCATGGCACAGTTTGCGCTGAG  649

seq1  CAACAGAAGTCCTTCTGAGCTGCTGCTGCCACCAGGAAGAGTCTCCAGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAGTCCTTCTGAGCTGCTGCTGCCACCAGGAAGAGTCTCCAGAG  699

seq1  ACTGGAACAGACAGGGTAACAAACTTGCCCACAGAACTGCCTTCCTGCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAACAGACAGGGTAACAAACTTGCCCACAGAACTGCCTTCCTGCCA  749

seq1  GGCAGATGGATCTCAGTGAGTTTGAAGCCAGCCTAATCTACAAAGTTTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGGATCTCAGTGAGTTTGAAGCCAGCCTAATCTACAAAGTTTCT  799

seq1  TGAAAACCAGGGATTTTAAGGAACTTCCTTCCTGACAGCAGGGTTTATAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCAGGGATTTTAAGGAACTTCCTTCCTGACAGCAGGGTTTATAT  849

seq1  CAGCAGGGGGCAGGATGGAGGCAGGAGTTCATTTCTCTTGTAGGCCACCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGGGCAGGATGGAGGCAGGAGTTCATTTCTCTTGTAGGCCACCA  899

seq1  GCATGCTAACCTTTCTATGATTATCTGAATCCAAGCCAACAAAGGTATCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAACCTTTCTATGATTATCTGAATCCAAGCCAACAAAGGTATCC  949

seq1  CAAGGACCTTAGGCAAGAGTCACCATGCAGTATCAAGAAACCCCTCTGCG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACCTTAGGCAAGAGTCACCATGCAGTATCAAGAAACCCCTCTGCG  999

seq1  GCCAGCGACCTGGTACAGTGGGTAGAGTACATTCCTAACATGGATCAAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCGACCTGGTACAGTGGGTAGAGTACATTCCTAACATGGATCAAAA  1049

seq1  GCTCTAGCCTTATCCCTGGCATTGCTTAGCCAGCTGTGGTGGCTAAACCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCCTTATCCCTGGCATTGCTTAGCCAGCTGTGGTGGCTAAACCC  1099

seq1  TGTCGTGCCAGAATTC  1108
      ||||||||||||||||
seq2  TGTCGTGCCAGAATTC  1115