BAC Information

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BAC

Clone NameB6Ng01-042O22
Chromosome5 (Build37)
Map Location 94,182,795 - 94,183,922
singlet/doubletsinglet
Overlap geneLOC666081
Upstream geneShroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077
Downstream geneEG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042O22.bB6Ng01-042O22.g
ACCDH869150DH869151
length1,1291,219
definitionDH869150|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O22, 5' end.DH869151|Mus musculus domesticus DNA, BAC clone: B6Ng01-042O22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcctcctgctggccagggtcttcttcaagtgcaaacaaatgctt
ggtgaatccgtgctccaactctgtagcacagggacccttttagggaagct
ctggcagtgtctcttgaccaaggtacaatctctgggtaaagttggtggaa
ctctagaggtggtcatgttttatgggaagcataaaggttaagccaaacac
atttatgtacccattggacacactttaaattgtgttacaattagcaatca
tctgtttttgtaataatttctgtcagtaagtgaactaaacataacttcca
aagggggaagccctatcaggtacaggaagttctatactctataaggatga
aggggagaagtgtcacccagtcaccatcagtctttaaggtcaatttagtt
agtgtctcctttggggttctatttatcttctctacctgacgtgatctctg
gtgtctataagcacatgaaatttccagtcaatccccagaatattagctaa
tctctaacttacctgggacacaaatgtaggtccattatctgaccctataa
acttaaaaaatatatatcttggaagaatttctttgttaccatctgtatag
tttcatgttaattgggaaagtctcaatctatcctggtaagatatctataa
atatcagcaaatgtttgtacccggatttatttggttttatttctgtagag
tccattccctgatagactcttggcttggtgatgtgatattgagtatcagg
gtctttctcattgtcaaccacattagttaattgacagacctcatagttct
taacaatgtcagctggtttcaaattgtcatcctctatcattaattatgac
actgagaaatgggccagttttggcctagatcacatcttctgactggtcag
agtgtgtgggatctcctgggtctagtgaaatcaaggacatgagaagtcca
aattctagggccatccactgggctgacttctttcccactggttggaatct
agtcattgaaagtgaatgatggccagcttttaggcttctatagaagctag
tatgaagaggaaaatccccataattttgaatatccttcctgggggtgggt
ggagtaggccctctttcttataaataggc
gaattctacgtaactaaggggtcatgtcctattatttggcaatgtacctg
gttcattctgaggttgttccaggaggcccttatctcaaaaatgttcttgg
aacagtctttagttgggagggttcgaactctagggtgaggagttcaggaa
tgcattctggggtgaagagttcaggagtgttctgggaacactctctagat
gggaggggtcgggctctggggtgaggaagagttcagtaattttttattct
tcattagcttcttgggtactatatctagctcctccattgcgggccttgtg
atccatccaatagctgactgtgaagatctacttctgtgtttgctaggccc
catcatagcctcacaagacacagctatatcaaggtccttttagcaaaatc
ttgctgctgtatgcaatggtttcagcatttggaatctgattatggtatgg
atacctgggtgtgacagtctcagtttcataaataaaataggggactgaca
tccaatgtatataaaaaactcaaaaaggtagactccagaaaatctaataa
ccccattaaaaatggggtacagagctaaacaaagaattcctaactgagga
ataccaaatggctgagaagcacctgaaaaaatgttcaacattcttaatca
ccagggaaatgcaaatcaaaacaaacctgagatcccccccccccggaaaa
aaagtcagaatggctaagatcaaaaatttaggtgacagcagatgctggca
aggatgtggagaaagagaaacactcctccattgttggtgggattgcaagc
tggtacagccaccctagaaatcattctggtggttcctctgaaaattggac
atagttctactggaagatcctgcaatacctatcctgggcaaaacgtagaa
gatgctccaactggttaataaagacacatgctccactttgttcatagcgg
cttatttatatagccagagctggaaagaacccagatgtgccttcagtaga
agaatggtatacagaaatgtggtaccatttacacatggagtactactcag
cctattaaaaacatggaaattatgaaatcctaacgaaatggatgctcctg
tagaatacatcttagtgagtatctatccccaagaacaatgtatcgatgcc
tgattcggaattgcctgaacttaatttcagtagaattgtaaccacaaaat
ctatgaaggaggactaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_94182795_94183922
seq2: B6Ng01-042O22.b_45_1173 (reverse)

seq1  GCCTATTTATAAGAAAGAGGG-CTACT-CACC--ACCCCAGGAAGGATTA  46
      ||||||||||||||||||||| ||||| ||||   |||||||||||||  
seq2  GCCTATTTATAAGAAAGAGGGCCTACTCCACCCACCCCCAGGAAGGATAT  50

seq1  TCAAAAATATAGAGGATATCCTCTTCATACTAAGGCTTCTATAGGAGCCT  96
      |||||| ||| | |  | ||||||||||||||  |||||||||| |||||
seq2  TCAAAATTATGGGGATTTTCCTCTTCATACTA--GCTTCTATAGAAGCCT  98

seq1  AAAAAGCTGGCCATCATTCACTGTCAATGACTAGATTCCAACCAGTGGGA  146
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  -AAAAGCTGGCCATCATTCACTTTCAATGACTAGATTCCAACCAGTGGGA  147

seq1  AAGAAGTCAGCCCAGTGGATGGCCCTAGAATTTGGACTTCTCATGTCCTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCAGCCCAGTGGATGGCCCTAGAATTTGGACTTCTCATGTCCTT  197

seq1  GATTTCACTAGACCCAGGAGATCCCACACACTCTGACCAGTCAGAAGATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACTAGACCCAGGAGATCCCACACACTCTGACCAGTCAGAAGATG  247

seq1  TGATCTAGGCCAAAACTGGCCCATTTCTCAGTGTCATAATTAATGATAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGGCCAAAACTGGCCCATTTCTCAGTGTCATAATTAATGATAGA  297

seq1  GGATGACAATTTGAAACCAGCTGACATTGTTAAGAACTATGAGGTCTGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACAATTTGAAACCAGCTGACATTGTTAAGAACTATGAGGTCTGTC  347

seq1  AATTAACTAATGTGGTTGACAATGAGAAAGACCCTGATACTCAATATCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTAATGTGGTTGACAATGAGAAAGACCCTGATACTCAATATCAC  397

seq1  ATCACCAAGCCAAGAGTCTATCAGGGAATGGACTCTACAGAAATAAAACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAGCCAAGAGTCTATCAGGGAATGGACTCTACAGAAATAAAACC  447

seq1  AAATAAATCCGGGTACAAACATTTGCTGATATTTATAGATATCTTACCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCCGGGTACAAACATTTGCTGATATTTATAGATATCTTACCAG  497

seq1  GATAGATTGAGACTTTCCCAATTAACATGAAACTATACAGATGGTAACAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTGAGACTTTCCCAATTAACATGAAACTATACAGATGGTAACAA  547

seq1  AGAAATTCTTCCAAGATATATATTTTTTAAGTTTATAGGGTCAGATAATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTTCCAAGATATATATTTTTTAAGTTTATAGGGTCAGATAATG  597

seq1  GACCTACATTTGTGTCCCAGGTAAGTTAGAGATTAGCTAATATTCTGGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACATTTGTGTCCCAGGTAAGTTAGAGATTAGCTAATATTCTGGGG  647

seq1  ATTGACTGGAAATTTCATGTGCTTATAGACACCAGAGATCACGTCAGGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTGGAAATTTCATGTGCTTATAGACACCAGAGATCACGTCAGGTA  697

seq1  GAGAAGATAAATAGAACCCCAAAGGAGACACTAACTAAATTGACCTTAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATAAATAGAACCCCAAAGGAGACACTAACTAAATTGACCTTAAA  747

seq1  GACTGATGGTGACTGGGTGACACTTCTCCCCTTCATCCTTATAGAGTATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGGTGACTGGGTGACACTTCTCCCCTTCATCCTTATAGAGTATA  797

seq1  GAACTTCCTGTACCTGATAGGGCTTCCCCCTTTGGAAGTTATGTTTAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCCTGTACCTGATAGGGCTTCCCCCTTTGGAAGTTATGTTTAGTT  847

seq1  CACTTACTGACAGAAATTATTACAAAAACAGATGATTGCTAATTGTAACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTGACAGAAATTATTACAAAAACAGATGATTGCTAATTGTAACA  897

seq1  CAATTTAAAGTGTGTCCAATGGGTACATAAATGTGTTTGGCTTAACCTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAGTGTGTCCAATGGGTACATAAATGTGTTTGGCTTAACCTTT  947

seq1  ATGCTTCCCATAAAACATGACCACCTCTAGAGTTCCACCAACTTTACCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCCATAAAACATGACCACCTCTAGAGTTCCACCAACTTTACCCA  997

seq1  GAGATTGTACCTTGGTCAAGAGACACTGCCAGAGCTTCCCTAAAAGGGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGTACCTTGGTCAAGAGACACTGCCAGAGCTTCCCTAAAAGGGTC  1047

seq1  CCTGTGCTACAGAGTTGGAGCACGGATTCACCAAGCATTTGTTTGCACTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTACAGAGTTGGAGCACGGATTCACCAAGCATTTGTTTGCACTT  1097

seq1  GAAGAAGACCCTGGCCAGCAGGAGGAGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  GAAGAAGACCCTGGCCAGCAGGAGGAGAATTC  1129