BAC Information

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BAC

Clone NameB6Ng01-043H02
Chromosome5 (Build37)
Map Location 45,050,401 - 45,174,211
singlet/doubletdoublet
Overlap geneLdb2, LOC100041481
Upstream gene5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043H02.bB6Ng01-043H02.g
ACCDH869504DH869505
length1,1681,157
definitionDH869504|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H02, 5' end.DH869505|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,173,029 - 45,174,211)(45,050,401 - 45,051,578)
sequence
gaattcttgggtctgtttgtttgtttgtttgacaagacagggtttctttg
tctagccctgactgtcctagaactccttgatctcagagatccatctgact
ctgcctcccaagtgctggcattaaaggcgtgagccactaacactatgcag
ctgaattgagaagtggctgtgtacccaggcctgtgcccaggtgctgttgc
gtcactgattctgtcgaatctcacgcttctgatggtccctacctctcaga
ccataaagtcaagactaaaagagagtgtaccatcttcccagggtttcaga
gacagcaagaactgcttcacggtttgatccagactgcccaagtccagaga
agagctttatggctcagctctgagatcttctagacagtgctgccttcact
gatgaaggaattggggcctgaagagatctcatgcctctcaggggctccca
ttctccaccagcaacccaatatatattgtgagggccatacccgtgtattt
cttgagtgtaaggagcatatctgtgtcattaacatagaatccatggctag
aagcaaacaaaaacaaaaaacaaaaaacaaacacccaagaaaacaaaaca
caaccaacaaaacaaacatacaaagcaacaacaacaacaaatctagagta
tctagcatattccagacagaatgatgaataccagaagagaagaatgttct
tatgtttaaacacagttagtgggaaccaaatgttgcctatgcaaacaggc
ccaatatgacttctatgaaggatattgtactggctagttttgtgtcaact
tgacacagctggagttatcacagagaaaggagcttcagttgaggaaatgc
ctccatgagatccaactgtaaggcattttctcaattagtgatcaaggggg
aaaggccccttgtgggtggtgccatctctgggctggtagtcttgttcttt
aagagagcaggctgagaagccaggggaagcaagccagtaaggacatcctt
catggcctctgtatcagctctgctcctgacctgctcgagttccagtcctg
actttttcagtgatggaacagcatgggaaatgtagctgaataaccctttc
ctcctacttgctctggtcatgatgttggtgcagggatgaacctggactaa
gaccggatacctatatcc
gaattccacttctagaattaactaggtaagttgctgtgaacaagccaaag
ccgagtcagcttctggatgtgttctgtacaaaataatcattacagttacg
atttgttgattatctttaagtaccgggaagtgcctgcatgtcacttataa
atatcattattctggtgctacgcaaatatagtattcattgaaaatagtaa
ggctcagagagaagaggcataatataggttcatcactgtagaagcagcta
tatgatcacatgtcaggcttgttgcatttacaacactgggctatttgcct
taaaagaaaggatttagtgtgtgctttcattctgaaaacagtaaagagct
taccctcctcctgactctacaggggtgagtcacaccacagcccctatacg
ttcaaatctttccagggtgagacaaggcagggatccagagccctggcagg
gcaactgaatgcatctgtaaactcccttactcacaacagtgaaaagggag
tcaagtatgaactttcctagcttcagagatagtctcagggcccactgggg
ataagcataaatcttcaaatttctttaaagttgagcaaattcacgatgac
aaatgtaacagctcctctaaattgaagttcatcgcttggcagtttgggag
gcttggaggaagtgccagcaaccagcacttggaaggaaatgaatcttcag
attctctgaaaacatagggagttactgtgggagacatatggagggtccca
tactgcacgggagaagaagactcacaaatgtcagcattggagcagcgatg
tcagaaggattgcagcggtccacgctgaactgtgaaaagaacgggaagct
ggcggtacccgtgcgccatggcaaacgatttcttcttaacctgtgctggt
tcttgattgagtcagtgaagcagggagggggaacagggaagggcatttta
ggatcatagcagagtcatttgtctcatcggggttttatgtcccctgcaat
ctcactttttccaataccacaagtataaatagaatctggctggacggcag
taggatggcatgagataacagagtcgatctgcatagcattttactatggt
tccttctctgcatttactagtccagactggcaggggttcgatatacttct
cgcctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_45173029_45174211
seq2: B6Ng01-043H02.b_43_1210 (reverse)

seq1  GGATATAGGTAT-CTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATC  49
      |||||||||||| | |||||||||  ||||   || ||||||| ||||||
seq2  GGATATAGGTATCCGGTCTTAGTCCAGGTT--CATCCCTGCACCAACATC  48

seq1  ATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACATTTC  99
      |||||||   |||||||   ||||||||||| ||||||||| ||||||||
seq2  ATGACCA--GAGCAAGT--AGGAGGAAAGGG-TTATTCAGC-TACATTTC  92

seq1  CACATTGCTGTT-CATCACTGAAAGAAGTCAGGACTGGAACTCGAGCAGG  148
      | || ||||||| ||||||||||| |||||||||||||||||||||||||
seq2  C-CA-TGCTGTTCCATCACTGAAA-AAGTCAGGACTGGAACTCGAGCAGG  139

seq1  TCAGGGAGCAGGAGCTGATACAGAGGCCATGGAGGGATGTTCTTTACTGG  198
      ||| |||||| ||||||||||||||||||| || ||||| || |||||||
seq2  TCA-GGAGCA-GAGCTGATACAGAGGCCAT-GAAGGATG-TCCTTACTGG  185

seq1  CTTGCTTCCCCTGGCTTTCTCAGCCTGCTCTCTTATAGAACCAAGACTAC  248
      ||||||||||||||| ||||||||||||||||||| |||| |||||||||
seq2  CTTGCTTCCCCTGGC-TTCTCAGCCTGCTCTCTTAAAGAA-CAAGACTAC  233

seq1  CAGCCCAGAGATGGCACCACCCACAAGGGGCCTTTCCCCCTTGATCACTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAGATGGCACCACCCACAAGGGGCCTTTCCCCCTTGATCACTA  283

seq1  ATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTG  333

seq1  AAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACT  383

seq1  AGCCAGTACAATATCCTTCATAGAAGTCATATTGGGCCTGTTTGCATAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTACAATATCCTTCATAGAAGTCATATTGGGCCTGTTTGCATAGG  433

seq1  CAACATTTGGTTCCCACTAACTGTGTTTAAACATAAGAACATTCTTCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTGGTTCCCACTAACTGTGTTTAAACATAAGAACATTCTTCTCT  483

seq1  TCTGGTATTCATCATTCTGTCTGGAATATGCTAGATACTCTAGATTTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTATTCATCATTCTGTCTGGAATATGCTAGATACTCTAGATTTGTT  533

seq1  GTTGTTGTTGCTTTGTATGTTTGTTTTGTTGGTTGTGTTTTGTTTTCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGCTTTGTATGTTTGTTTTGTTGGTTGTGTTTTGTTTTCTTG  583

seq1  GGTGTTTGTTTTTTGTTTTTTGTTTTTGTTTGCTTCTAGCCATGGATTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGTTTTTTGTTTTTTGTTTTTGTTTGCTTCTAGCCATGGATTCT  633

seq1  ATGTTAATGACACAGATATGCTCCTTACACTCAAGAAATACACGGGTATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATGACACAGATATGCTCCTTACACTCAAGAAATACACGGGTATG  683

seq1  GCCCTCACAATATATATTGGGTTGCTGGTGGAGAATGGGAGCCCCTGAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCACAATATATATTGGGTTGCTGGTGGAGAATGGGAGCCCCTGAGA  733

seq1  GGCATGAGATCTCTTCAGGCCCCAATTCCTTCATCAGTGAAGGCAGCACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGATCTCTTCAGGCCCCAATTCCTTCATCAGTGAAGGCAGCACT  783

seq1  GTCTAGAAGATCTCAGAGCTGAGCCATAAAGCTCTTCTCTGGACTTGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAAGATCTCAGAGCTGAGCCATAAAGCTCTTCTCTGGACTTGGGC  833

seq1  AGTCTGGATCAAACCGTGAAGCAGTTCTTGCTGTCTCTGAAACCCTGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGATCAAACCGTGAAGCAGTTCTTGCTGTCTCTGAAACCCTGGGA  883

seq1  AGATGGTACACTCTCTTTTAGTCTTGACTTTATGGTCTGAGAGGTAGGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTACACTCTCTTTTAGTCTTGACTTTATGGTCTGAGAGGTAGGGA  933

seq1  CCATCAGAAGCGTGAGATTCGACAGAATCAGTGACGCAACAGCACCTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAAGCGTGAGATTCGACAGAATCAGTGACGCAACAGCACCTGGG  983

seq1  CACAGGCCTGGGTACACAGCCACTTCTCAATTCAGCTGCATAGTGTTAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCTGGGTACACAGCCACTTCTCAATTCAGCTGCATAGTGTTAGT  1033

seq1  GGCTCACGCCTTTAATGCCAGCACTTGGGAGGCAGAGTCAGATGGATCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACGCCTTTAATGCCAGCACTTGGGAGGCAGAGTCAGATGGATCTC  1083

seq1  TGAGATCAAGGAGTTCTAGGACAGTCAGGGCTAGACAAAGAAACCCTGTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAAGGAGTTCTAGGACAGTCAGGGCTAGACAAAGAAACCCTGTC  1133

seq1  TTGTCAAACAAACAAACAAACAGACCCAAGAATTC  1183
      |||||||||||||||||||||||||||||||||||
seq2  TTGTCAAACAAACAAACAAACAGACCCAAGAATTC  1168

seq1: chr5_45050401_45051578
seq2: B6Ng01-043H02.g_68_1224

seq1  GAATTCCACTTCTAGAATTAACTAGGTAAGTTGCTGTGAACAAGCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCTAGAATTAACTAGGTAAGTTGCTGTGAACAAGCCAAAG  50

seq1  CCGAGTCAGCTTCTGGATGTGTTCTGTACAAAATAATCATTACAGTTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCAGCTTCTGGATGTGTTCTGTACAAAATAATCATTACAGTTACG  100

seq1  ATTTGTTGATTATCTTTAAGTACCGGGAAGTGCCTGCATGTCACTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGATTATCTTTAAGTACCGGGAAGTGCCTGCATGTCACTTATAA  150

seq1  ATATCATTATTCTGGTGCTACGCAAATATAGTATTCATTGAAAATAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTATTCTGGTGCTACGCAAATATAGTATTCATTGAAAATAGTAA  200

seq1  GGCTCAGAGAGAAGAGGCATAATATAGGTTCATCACTGTAGAAGCAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGAGAAGAGGCATAATATAGGTTCATCACTGTAGAAGCAGCTA  250

seq1  TATGATCACATGTCAGGCTTGTTGCATTTACAACACTGGGCTATTTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCACATGTCAGGCTTGTTGCATTTACAACACTGGGCTATTTGCCT  300

seq1  TAAAAGAAAGGATTTAGTGTGTGCTTTCATTCTGAAAACAGTAAAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAGGATTTAGTGTGTGCTTTCATTCTGAAAACAGTAAAGAGCT  350

seq1  TACCCTCCTCCTGACTCTACAGGGGTGAGTCACACCACAGCCCCTATACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCTCCTGACTCTACAGGGGTGAGTCACACCACAGCCCCTATACG  400

seq1  TTCAAATCTTTCCAGGGTGAGACAAGGCAGGGATCCAGAGCCCTGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCTTTCCAGGGTGAGACAAGGCAGGGATCCAGAGCCCTGGCAGG  450

seq1  GCAACTGAATGCATCTGTAAACTCCCTTACTCACAACAGTGAAAAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGAATGCATCTGTAAACTCCCTTACTCACAACAGTGAAAAGGGAG  500

seq1  TCAAGTATGAACTTTCCTAGCTTCAGAGATAGTCTCAGGGCCCACTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATGAACTTTCCTAGCTTCAGAGATAGTCTCAGGGCCCACTGGGG  550

seq1  ATAAGCATAAATCTTCAAATTTCTTTAAAGTTGAGCAAATTCACGATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATAAATCTTCAAATTTCTTTAAAGTTGAGCAAATTCACGATGAC  600

seq1  AAATGTAACAGCTCCTCTAAATTGAAGTTCATCGCTTGGCAGTTTGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAACAGCTCCTCTAAATTGAAGTTCATCGCTTGGCAGTTTGGGAG  650

seq1  GCTTGGAGGAAGTGCCAGCAACCAGCACTTGGAAGGAAATGAATCTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGGAAGTGCCAGCAACCAGCACTTGGAAGGAAATGAATCTTCAG  700

seq1  ATTCTCTGAAAACATAGGGAGTTACTGTGGGAGACATATGGAGGGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGAAAACATAGGGAGTTACTGTGGGAGACATATGGAGGGTCCCA  750

seq1  TACTGCACGGGAGAAGAAGACTCACAAATGTCAGCATTGGAGCAGCGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCACGGGAGAAGAAGACTCACAAATGTCAGCATTGGAGCAGCGATG  800

seq1  TCAGAAGGATTGCAGCGGTCCACGCTGAACTGTGAAAAGAACGGGAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGATTGCAGCGGTCCACGCTGAACTGTGAAAAGAACGGGAAGCT  850

seq1  GGCGGTACCCGTGCGCCATGGCAAACGATTTCTTCTTAACCTGTGCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTACCCGTGCGCCATGGCAAACGATTTCTTCTTAACCTGTGCTGGT  900

seq1  TCTTGATTGAGTCAGTGAAGCAGGGGAGGGGGAACAGGGAAGGGCATTTT  950
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  TCTTGATTGAGTCAGTGAAGCA-GGGAGGGGGAACAGGGAAGGGCA-TTT  948

seq1  TAGGATCATAGCAGGAGTCATTTGTCTCATCGGGTTTTTATGTCCCCTGC  1000
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TAGGATCATAGCA-GAGTCATTTGTCTCATCGGGGTTTTATGTCCCCTGC  997

seq1  AATCTCACTTTTTCCAATACACCAAGTATTAAATAGAAACCTGGCTGGGA  1050
      ||||||||||||||||||||  |||||| ||||||| || |||||| |||
seq2  AATCTCACTTTTTCCAATACCACAAGTA-TAAATAG-AATCTGGCT-GGA  1044

seq1  CGGGCAGTAAGGATGGCATGAGATACAGAGAGTCGATCCTGCATAGCAAA  1100
      | |||||| |||||||||||||||| | ||||||||| ||||||||||  
seq2  C-GGCAGT-AGGATGGCATGAGATA-ACAGAGTCGAT-CTGCATAGCA--  1088

seq1  TATTAACTATGGGTCTCTTCTCTGCCATTTACTAAGTCACAGGGACATGC  1150
        || ||||||| || |||||||| |||||||| |||| ||  |||  ||
seq2  -TTTTACTATGGTTC-CTTCTCTG-CATTTACT-AGTC-CA--GACTGGC  1131

seq1  AGTGGGTCAGAATATACTTCTCGCCTAC  1178
      || || ||   |||||||||||||||||
seq2  AGGGGTTC--GATATACTTCTCGCCTAC  1157