BAC Information

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BAC

Clone NameB6Ng01-043J08
Chromosome5 (Build37)
Map Location 59,058,745 - 59,194,162
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J08.bB6Ng01-043J08.g
ACCDH869601DH869602
length1,042916
definitionDH869601|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J08, 5' end.DH869602|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,193,107 - 59,194,162)(59,058,745 - 59,059,648)
sequence
gaattccacacagagggtgtaataaaataaacatttgtgtaattacatta
tctttaagactcttttacttagaaacaattgccatctatcacaccatcct
gccattcctttgtgtttggttttatgtgaaattccaatatatatgtggaa
taaattccttttaaaaaggaattgtgataaattaatgtctatcctgttgt
aaaggcaacagaaataggagaaaaccacaaagttaacttaaagttaaatg
gagatgattctgaaaggttacaatgaaataaaataaaattattttaataa
aaactgacaagcaaatgaagaccttggtgagtaggaattggtatacatag
atataattatactttaatcttttctgtgactaattactaacgtaacaatt
gaaatgcatctttattctgtatcagtgtgtctttctgaacaaaggagaac
atagaaattctattattgtcccttgctagatatactattttttgtttctt
aactatcaaaggtttcaattttctaccagattcattgtgtggttcaaacc
atgtctcagtatatctgttgtccatagtaggagatctaacataacaaaat
aaaatatgaaaataatatacatgagttaaagagatgacagttaaaagcat
ttactgcttttcttcttttcttttcttttcttttctttctttctttcttt
ttttttttttttctttttttttttttgagacagggtttctctgtgtagct
ctggctgtcctggaactcactttgtagaccaggctgggcccaaactcaga
aatcggcctgcctaccaagtgctgggattaaaggcgtattccaccacaca
cgtcctactgttcttcttgattggctgctgaacatctatgtttgaaattc
tttgtctccaggtccaacagatccaccacattgatcttgcttctgtagat
ctgtgacacacaaccacatactactaccccatatatgtccatgcatggtc
agctcaccatatgccatgacatccacacacgatatatataat
gaattcatcttcatcatctacagatataagttaattgttgcttattcaat
cctaaatggtcggccttgaagtcatataatttaaaagtgacagttaatga
atggactaaccaagctgtatttatatgcttgtgcatttacatgtatatgt
aacaaaaataactacagaacaggtggctatcaatttgaaaggaaataagg
gcgatacactgaaagtggatggaaggagaggacatgggacctactgatga
gaagatagggaagaaagtaattcatgtaaatatgttttaatttttaaaga
gtacattaaaaataagtcttgtcaaatagcagaaatagaggtttgaagaa
tttagcatttctaatatctggaattccttgctattcccaaggatatggta
agtgaactttatagcacaagcttttattattttattttattttattttat
tttattttattttattttattttatttttttacaagaaatctcaggctca
ttaatttaccaaagaaggataagcattttaagcagaagttttcctctgtt
acgatgattatttaactataatgtcaaagattccagattttacaaacaga
taattaaagtaggtgctgctgactcattagtcatagctctttggtgatta
gattttaaaagcattcctagagactcttgttctaataaatgaagaacatg
aaactgtgaattacacaaagttttattccacaagtttacatgtgattaac
ctttaaaggagatgacctgaatttcatttaaatggccaggcattcaagct
ttagtcaaaggcaattattggctaccaatcagaatatatatatgtgtgtg
tgtatatatatatatatatatatatgtatacacatatatatatatataca
cagagacagatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59193107_59194162
seq2: B6Ng01-043J08.b_42_1083 (reverse)

seq1  ATTATAATTATCTGTGTGTGGATGTCCATGTGCATATGTGTGAGCCTGAC  50
      ||||||  |||| |||||||||||| |||| ||||||| ||||| |||||
seq2  ATTATATATATC-GTGTGTGGATGT-CATG-GCATATG-GTGAG-CTGAC  45

seq1  CATGCATGTGACAATATATGTGTGTATGTATGTATGTGTGTTTGTGTGTT  100
      |||||||| ||| ||||||| | ||| ||| |||  |||| ||||||| |
seq2  CATGCATG-GAC-ATATATG-GGGTA-GTA-GTA--TGTGGTTGTGTG-T  87

seq1  CACAGATCCTACAGAAGCAAGATCAATGTGGTGGATCTGTTGGACCTGGA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAT-CTACAGAAGCAAGATCAATGTGGTGGATCTGTTGGACCTGGA  136

seq1  GACAAAGAATTTCAAACATAGATGTTCAGCAGCCAATCAAGAAGAACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAATTTCAAACATAGATGTTCAGCAGCCAATCAAGAAGAACAGT  186

seq1  AGGACGTGTGTGGTGGAATACGCCTTTAATCCCAGCACTTGGTAGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTGTGTGGTGGAATACGCCTTTAATCCCAGCACTTGGTAGGCAGG  236

seq1  CCGATTTCTGAGTTTGGGCCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTTCTGAGTTTGGGCCCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  286

seq1  AGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAGAAAAAA  336

seq1  AAAAAAAAAGAAAGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAAGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAGAAAAG  386

seq1  CAGTAAATGCTTTTAACTGTCATCTCTTTAACTCATGTATATTATTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATGCTTTTAACTGTCATCTCTTTAACTCATGTATATTATTTTCA  436

seq1  TATTTTATTTTGTTATGTTAGATCTCCTACTATGGACAACAGATATACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTGTTATGTTAGATCTCCTACTATGGACAACAGATATACTG  486

seq1  AGACATGGTTTGAACCACACAATGAATCTGGTAGAAAATTGAAACCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGTTTGAACCACACAATGAATCTGGTAGAAAATTGAAACCTTTG  536

seq1  ATAGTTAAGAAACAAAAAATAGTATATCTAGCAAGGGACAATAATAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAAGAAACAAAAAATAGTATATCTAGCAAGGGACAATAATAGAAT  586

seq1  TTCTATGTTCTCCTTTGTTCAGAAAGACACACTGATACAGAATAAAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTTCTCCTTTGTTCAGAAAGACACACTGATACAGAATAAAGATG  636

seq1  CATTTCAATTGTTACGTTAGTAATTAGTCACAGAAAAGATTAAAGTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATTGTTACGTTAGTAATTAGTCACAGAAAAGATTAAAGTATAA  686

seq1  TTATATCTATGTATACCAATTCCTACTCACCAAGGTCTTCATTTGCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTATGTATACCAATTCCTACTCACCAAGGTCTTCATTTGCTTGT  736

seq1  CAGTTTTTATTAAAATAATTTTATTTTATTTCATTGTAACCTTTCAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTATTAAAATAATTTTATTTTATTTCATTGTAACCTTTCAGAAT  786

seq1  CATCTCCATTTAACTTTAAGTTAACTTTGTGGTTTTCTCCTATTTCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCATTTAACTTTAAGTTAACTTTGTGGTTTTCTCCTATTTCTGTT  836

seq1  GCCTTTACAACAGGATAGACATTAATTTATCACAATTCCTTTTTAAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACAACAGGATAGACATTAATTTATCACAATTCCTTTTTAAAAGG  886

seq1  AATTTATTCCACATATATATTGGAATTTCACATAAAACCAAACACAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTCCACATATATATTGGAATTTCACATAAAACCAAACACAAAGG  936

seq1  AATGGCAGGATGGTGTGATAGATGGCAATTGTTTCTAAGTAAAAGAGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGGATGGTGTGATAGATGGCAATTGTTTCTAAGTAAAAGAGTCT  986

seq1  TAAAGATAATGTAATTACACAAATGTTTATTTTATTACACCCTCTGTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAATGTAATTACACAAATGTTTATTTTATTACACCCTCTGTGTG  1036

seq1  GAATTC  1056
      ||||||
seq2  GAATTC  1042

seq1: chr5_59058745_59059648
seq2: B6Ng01-043J08.g_69_984

seq1  GAATTCATCTTCATCATCTACAGATATAAGTTAATTGTTGCTTATTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCATCATCTACAGATATAAGTTAATTGTTGCTTATTCAAT  50

seq1  CCTAAATGGTCGGCCTTGAAGTCATATAATTTAAAAGTGACAGTTAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATGGTCGGCCTTGAAGTCATATAATTTAAAAGTGACAGTTAATGA  100

seq1  ATGGACTAACCAAGCTGTATTTATATGCTTGTGCATTTACATGTATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTAACCAAGCTGTATTTATATGCTTGTGCATTTACATGTATATGT  150

seq1  AACAAAAATAACTACAGAACAGGTGGCTATCAATTTGAAAGGAAATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATAACTACAGAACAGGTGGCTATCAATTTGAAAGGAAATAAGG  200

seq1  GCGATACACTGAAAGTGGATGGAAGGAGAGGACATGGGACCTACTGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATACACTGAAAGTGGATGGAAGGAGAGGACATGGGACCTACTGATGA  250

seq1  GAAGATAGGGAAGAAAGTAATTCATGTAAATATGTTTTAATTTTTAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGGGAAGAAAGTAATTCATGTAAATATGTTTTAATTTTTAAAGA  300

seq1  GTACATTAAAAATAAGTCTTGTCAAATAGCAGAAATAGAGGTTTGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTAAAAATAAGTCTTGTCAAATAGCAGAAATAGAGGTTTGAAGAA  350

seq1  TTTAGCATTTCTAATATCTGGAATTCCTTGCTATTCCCAAGGATATGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATTTCTAATATCTGGAATTCCTTGCTATTCCCAAGGATATGGTA  400

seq1  AGTGAACTTTATAGCACAAGCTTTTATTATTTTATTTTATTTTATTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTTTATAGCACAAGCTTTTATTATTTTATTTTATTTTATTTTAT  450

seq1  TTTATTTTATTTTATTTTATTTTATTTTTTTACAAGAAATCTCAGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTTATTTTATTTTATTTTTTTACAAGAAATCTCAGGCTCA  500

seq1  TTAATTTACCAAAGAAGGATAAGCATTTTAAGCAGAAGTTTTCCTCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTACCAAAGAAGGATAAGCATTTTAAGCAGAAGTTTTCCTCTGTT  550

seq1  ACGATGATTATTTAACTATAATGTCAAAGATTCCAGATTTTACAAACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGATTATTTAACTATAATGTCAAAGATTCCAGATTTTACAAACAGA  600

seq1  TAATTAAAGTAGGTGCTGCTGACTCATTAGTCATAGCTCTTTGGTGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAGTAGGTGCTGCTGACTCATTAGTCATAGCTCTTTGGTGATTA  650

seq1  GATTTTAAAAGCATTCCTAGAGACTCTTGTTCTAATAAATGAAGAACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAAGCATTCCTAGAGACTCTTGTTCTAATAAATGAAGAACATG  700

seq1  AAACTGTGAATTACACAAAGTTTTATTCCACAAGTTTACATGTGATTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGAATTACACAAAGTTTTATTCCACAAGTTTACATGTGATTAAC  750

seq1  CTTTAAAGGAGATGACCTGAATTTCATTTAAATGGCCAGGCATTCAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGAGATGACCTGAATTTCATTTAAATGGCCAGGCATTCAAGCT  800

seq1  TTAGTCAAAGGCAATTATTGGCTACCAATCAGAATATATATATGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAAAGGCAATTATTGGCTACCAATCAGAATATATATATGTGTGTG  850

seq1  TGTATATATATATATATATATATATGTATATATATATATATATATAT---  897
      |||||||||||||||||||||||||||||| | ||||||||||||||   
seq2  TGTATATATATATATATATATATATGTATACACATATATATATATATACA  900

seq1  ---------ATATATA  904
               |||||||
seq2  CAGAGACAGATATATA  916