BAC Information

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BAC

Clone NameB6Ng01-043L14
Chromosome5 (Build37)
Map Location 91,916,993 - 92,002,996
singlet/doubletdoublet
Overlap gene9130213B05Rik
Upstream geneAfp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043L14.bB6Ng01-043L14.g
ACCDH869700DH869701
length1,159951
definitionDH869700|Mus musculus domesticus DNA, BAC clone: B6Ng01-043L14, 5' end.DH869701|Mus musculus domesticus DNA, BAC clone: B6Ng01-043L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,916,993 - 91,918,168)(92,002,446 - 92,002,996)
sequence
gaattccatatctgagactaacatagaaaacagagtagtcatggaaaatt
agactctaaatcaaagtttagcatcacctggaaatgaaaatgaggtgact
ttaagacaacaaacccacagaaccttaaataagagccatgagacaacctt
gccaagggcagtggtctccttggcctaacatacccaatcacttttgagta
attttacttaaatgtttaaggaaagagggtcctgctatttgatttataca
tgttgatctccactaattcgcctcatatctataagaacatatctcaaata
tctttgcactcttagtatgttatgctcacactgtaagtggtcaataagaa
ttttttagatatataactagaattttgtggatgaaaaactttctatccta
tcagaaaaaacattagatatgaagaaaacacaaatggagaaccaagtgag
gtagtcgtgcattttatattcaaagtcctgtgacagagaagggactcgta
ttcacatatcagatccagctttgaaaagtgtggataacaaagctaggtgt
ggggtgctttcagatggccagggatatacagggattctcaaagaagtctt
agccaggcagatgatctgagcctgaccattatatggggtacctaaggtaa
ctgatttcagttttctctggtggtagcactcacacacacaggaaaccctg
gagagagagagaaaaaaactagatagaattggtctgcaccattcaacaag
ccagcagtaatccccaagtccagtatgctgtcccaaggctgtgagtgagg
aaggcaagggcatgaagaagaggccaggtgagcaggaccctctgccaagc
ttccttgaataagaatttctcgtggtactttaatctactatacatgtctt
gctttaaaacataaaaaaaaatctccagtccctgacacatcttttgttat
cattttccattttggactttttttaaaggtcagaaaatctacacaacttg
gatttataaaaaactctcttagtgtctatgcgctgtagaaacaccatgac
cgtggcactcttataaacaaacaaacaaacaaacaatacaaacaaacatt
caatggggctggcttaattttcagaccgtagtccattgtctcatgccagg
aacatgatg
gaattcagaagtcatctttgacatcttgatcttttattatttccatttag
cattttttctgacaggctccctcatccctattgttattgatataacacct
tcatatgcttgtggtctcttgtttgctatgaatttttattctccagtgtt
gtttcttctcatcttctttcttagtgttcccattatcacttctttgatag
catggtccttgtcctgtatgccattgtttctagcttcattgaccacccat
taccaggtgacattaaaaaacacacaattgaccttttctgatgaaaagtg
actgaaactttggtaatctccaaagtaatatgaccatctttctaatggta
gtaagattattgctagttggaagctcaaaatagcaggagggtgggcatag
tccaccagaaagttattagagaggtgggacttctgtttgcattctctgac
ctttaacctgaggcagctgagctgattaccaatggtcagtgatttcactg
atcatgttcacataatgatgccctctctgaaggggcagggtttggggaac
ttactgttaaatgaacacgtgaagattgttgaaggttgtaggcatgccca
gagggcactggggagctctgggctccttcctctgtgctttgttccacgtg
tgttccattgtctgtatcttttgtattaacccttatctcaaactaataaa
tgtatttccaagttttgtgagatatgctaaagtaagttaaccaaatccca
ggaggtggctgtggagacccccaacttacagcagttggtcagaagtgtaa
caacccatgtttacaactggcatctgaggtagaaggtagtcttgtgtgac
agagctcttgagacttgtggaacatgaagtttcttccaagtacatggtgt
cagaattgaactgaattgaattgagtgatgatagtcagcttgtacccatt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91916993_91918168
seq2: B6Ng01-043L14.b_43_1201

seq1  GAATTCCATATCTGAGACTAACATAGAAAACAGAGTAGTCATGGAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATCTGAGACTAACATAGAAAACAGAGTAGTCATGGAAAATT  50

seq1  AGACTCTAAATCAAAGTTTAGCATCACCTGGAAATGAAAATGAGGTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAAATCAAAGTTTAGCATCACCTGGAAATGAAAATGAGGTGACT  100

seq1  TTAAGACAACAAACCCACAGAACCTTAAATAAGAGCCATGAGACAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAACAAACCCACAGAACCTTAAATAAGAGCCATGAGACAACCTT  150

seq1  GCCAAGGGCAGTGGTCTCCTTGGCCTAACATACCCAATCACTTTTGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGGCAGTGGTCTCCTTGGCCTAACATACCCAATCACTTTTGAGTA  200

seq1  ATTTTACTTAAATGTTTAAGGAAAGAGGGTCCTGCTATTTGATTTATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTAAATGTTTAAGGAAAGAGGGTCCTGCTATTTGATTTATACA  250

seq1  TGTTGATCTCCACTAATTCGCCTCATATCTATAAGAACATATCTCAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATCTCCACTAATTCGCCTCATATCTATAAGAACATATCTCAAATA  300

seq1  TCTTTGCACTCTTAGTATGTTATGCTCACACTGTAAGTGGTCAATAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCACTCTTAGTATGTTATGCTCACACTGTAAGTGGTCAATAAGAA  350

seq1  TTTTTTAGATATATAACTAGAATTTTGTGGATGAAAAACTTTCTATCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGATATATAACTAGAATTTTGTGGATGAAAAACTTTCTATCCTA  400

seq1  TCAGAAAAAACATTAGATATGAAGAAAACACAAATGGAGAACCAAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAAACATTAGATATGAAGAAAACACAAATGGAGAACCAAGTGAG  450

seq1  GTAGTCGTGCATTTTATATTCAAAGTCCTGTGACAGAGAAGGGACTCGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCGTGCATTTTATATTCAAAGTCCTGTGACAGAGAAGGGACTCGTA  500

seq1  TTCACATATCAGATCCAGCTTTGAAAAGTGTGGATAACAAAGCTAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATATCAGATCCAGCTTTGAAAAGTGTGGATAACAAAGCTAGGTGT  550

seq1  GGGGTGCTTTCAGATGGCCAGGGATATACAGGGATTCTCAAAGAAGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCTTTCAGATGGCCAGGGATATACAGGGATTCTCAAAGAAGTCTT  600

seq1  AGCCAGGCAGATGATCTGAGCCTGACCATTATATGGGGTACCTAAGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCAGATGATCTGAGCCTGACCATTATATGGGGTACCTAAGGTAA  650

seq1  CTGATTTCAG-TTTCTCTGGTGGTAGCACTCACACACACAGGAAACCCTG  699
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCAGTTTTCTCTGGTGGTAGCACTCACACACACAGGAAACCCTG  700

seq1  GAGAGAGAGAGAAAAAAACTAGATAGAATTGGTCTGCACCATTCAACAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAAAAAAACTAGATAGAATTGGTCTGCACCATTCAACAAG  750

seq1  CCAGCAGTAATCCCCAAGTCCAGTATGCTGTCCCAAGGCTGTGAGTGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTAATCCCCAAGTCCAGTATGCTGTCCCAAGGCTGTGAGTGAGG  800

seq1  AAGGCAAGGGCATGAAGAAGAGGCCAGGTGAGCAGGACCCTCTGCCAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGGGCATGAAGAAGAGGCCAGGTGAGCAGGACCCTCTGCCAAGC  850

seq1  TTCCTTGAATAAGAATTTCTCGTGGTACTTTATTCTACTATACATGTCTT  899
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TTCCTTGAATAAGAATTTCTCGTGGTACTTTAATCTACTATACATGTC-T  899

seq1  TGCTTTAAAACATACAAAAAAATCTCCAGTCCTTGACACATC-TTTGTTA  948
      |||||||||||||| ||||||||||||||||| ||||||||| |||||||
seq2  TGCTTTAAAACATAAAAAAAAATCTCCAGTCCCTGACACATCTTTTGTTA  949

seq1  TCATTTTCAATGTTGGAC-TTTTTTAAAGGTCAGATAATCTACAACAACT  997
      |||||||| || |||||| |||||||||||||||| ||||||| ||||||
seq2  TCATTTTCCATTTTGGACTTTTTTTAAAGGTCAGAAAATCTAC-ACAACT  998

seq1  TGGATTTTATATATACTCTCTTAGTGTTCTATTGCGCTGTGAAGAGACAC  1047
      |||||||   | | |||||||||||| |||| ||||||||  ||| ||||
seq2  TGGATTTATAAAAAACTCTCTTAGTG-TCTA-TGCGCTGT--AGAAACAC  1044

seq1  CATGACCGTGGCAACTCTTATTAAAACAAAACAAAACAAAACAAAACAAA  1097
      |||||||||||| ||||||||  |||||||   |||||||   |||||| 
seq2  CATGACCGTGGC-ACTCTTAT--AAACAAA--CAAACAAA--CAAACAAT  1087

seq1  ACAAAACAAAACATTCAATTGGGGCTGGCTTACAGTTTCAGACCGTTAGT  1147
      |||||   |||||||||| ||||||||||||| | |||||||||| ||||
seq2  ACAAA--CAAACATTCAA-TGGGGCTGGCTTA-ATTTTCAGACCG-TAGT  1132

seq1  CCATTGTCATCATGGCAGGGAACATGATG  1176
      |||||||| ||||| || |||||||||||
seq2  CCATTGTC-TCATGCCA-GGAACATGATG  1159

seq1: chr5_92002446_92002996
seq2: B6Ng01-043L14.g_68_618 (reverse)

seq1  AGTTCCCCAAACCCTGCCCCTTCAGAGAGGGCATCATTATGTGAACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCCAAACCCTGCCCCTTCAGAGAGGGCATCATTATGTGAACATGA  50

seq1  TCAGTGAAATCACTGACCATTGGTAATCAGCTCAGCTGCCTCAGGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAATCACTGACCATTGGTAATCAGCTCAGCTGCCTCAGGTTAAA  100

seq1  GGTCAGAGAATGCAAACAGAAGTCCCACCTCTCTAATAACTTTCTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGAATGCAAACAGAAGTCCCACCTCTCTAATAACTTTCTGGTGG  150

seq1  ACTATGCCCACCCTCCTGCTATTTTGAGCTTCCAACTAGCAATAATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCCACCCTCCTGCTATTTTGAGCTTCCAACTAGCAATAATCTTA  200

seq1  CTACCATTAGAAAGATGGTCATATTACTTTGGAGATTACCAAAGTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATTAGAAAGATGGTCATATTACTTTGGAGATTACCAAAGTTTCAG  250

seq1  TCACTTTTCATCAGAAAAGGTCAATTGTGTGTTTTTTAATGTCACCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTCATCAGAAAAGGTCAATTGTGTGTTTTTTAATGTCACCTGGT  300

seq1  AATGGGTGGTCAATGAAGCTAGAAACAATGGCATACAGGACAAGGACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTGGTCAATGAAGCTAGAAACAATGGCATACAGGACAAGGACCAT  350

seq1  GCTATCAAAGAAGTGATAATGGGAACACTAAGAAAGAAGATGAGAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAAGAAGTGATAATGGGAACACTAAGAAAGAAGATGAGAAGAAA  400

seq1  CAACACTGGAGAATAAAAATTCATAGCAAACAAGAGACCACAAGCATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGAGAATAAAAATTCATAGCAAACAAGAGACCACAAGCATATG  450

seq1  AAGGTGTTATATCAATAACAATAGGGATGAGGGAGCCTGTCAGAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTATATCAATAACAATAGGGATGAGGGAGCCTGTCAGAAAAAAT  500

seq1  GCTAAATGGAAATAATAAAAGATCAAGATGTCAAAGATGACTTCTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGGAAATAATAAAAGATCAAGATGTCAAAGATGACTTCTGAATT  550

seq1  C  551
      |
seq2  C  551