BAC Information

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BAC

Clone NameB6Ng01-043M23
Chromosome5 (Build37)
Map Location 14,993,958 - 14,995,143
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043M23.bB6Ng01-043M23.g
ACCDH869755DH869756
length1,2381,180
definitionDH869755|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M23, 5' end.DH869756|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagacattcaaagaagacataatcccaatactcttcaaact
atcccacaaaatagaaacagaaggaacgctacccaatatgttctatgaag
ccacagttgcacttattcctaaacacacaaagactcaacaaagaaagaga
acttcagaacatttttgcttatgaatatcaatgcaaaaaaaactcaataa
aattcttgcaaaccaaatccaagaacacatcaaaatgatcatttaccaca
atcaagcaggcttcatccaagaaatgcagagataattcaacatacagaaa
tccactgaaaaacaaaaaacacatgatcatctcattagattctgagaaat
aatttgataaaatttaacaccccttcatgttaaaagtcttggaaaaatca
ggaattccaccagaggattcctaaacctgatgaacgacttcagcaaagtg
actggatataaaattaacttaaacaaatcagtagccttcctctacttaag
gacaaataggctgagaaagaaattacggaaatgacacccttcacaatagt
cacaaataatattagataccttggtgtgactctaaccaagcaagtgaaag
atctgtatgacaagaatttcaagtctctgaagaaagaaatttaacagaag
gtggaaagatctcccatgctcatggattgacaggatgaatataataaaat
tggccatcttgccaaaagcaatctacagattcaatgcaatccccattaaa
attccaactcaattcttcatagaattagaaacagcaatttgcaaattcat
ttggaataacaaaaaatctaggaaagcaaaaactattctcaacaaaagaa
cttctggggaaatcaccatccctaacctcaagctgtattacagagcaatc
gtgataaaactttatggtattggtacagagagaggcaggatagatcagtg
gaatagaattgaagacccagaaatgaacccacacacctctggtcacttga
tctttgacaagaggtaaacccattcagttggaaaaaagacagcatttcac
aatgtgctgtcactggcggtatcatgtagaagaaggcaatggatcattct
ttatctccctgttacaagcttatgtcagtggatcagaccgtcttataaac
gaatcactgactataaggaaattggaatgccttgaacatggtcatgggga
aattctgaacaggacccaaatggctctatgtcgtggta

gaattcctgatctttccaagacttttttcattaatgggtgttggatcttg
tcaaatgctttttccacatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctatttggtcaggacggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
ctcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtgggtgggccattttcttaa
ttgatgtcataagtcaaggcatagctcaacctgggcacttacatcttggg
tggctgggcctgaataaaaaataaaaaacaaaacaaaaacaaagaaaaca
aaaaacaaaaaattatctgagaactatccaactaagaggaacctctcgcg
ggtctctttttcagttcctgccacataaattctttcctgtgccaatatgc
tttgggtcagtgtcttagcagaacaagagagacagagggcatcactaaga
aatctcagctccatgaaaacacacctaaggtcactaagcctcagcatctg
ctcttcccagttaagctgccttgaataaaactttcttactcctctccttt
agtcgtcagaatgcgctggagttttagtcatagcatcatgataacaacct
tacagagaaagagaattttgaaattatttctattttgttctgctggtttc
gtttggtttgagacaatgtctcacactataacctaagctggagctcattg
tacagctaaagccgacctcaaactgacagcaatcttcacaccacagcctc
ccaactgcttagattatagtgtgaatccatacctggtgatcatctgtttc
atactatttgattctgttttatccatcctttcactatctataaaattcaa
ctcctgctcatgccaataagaagacttgatcttgctttataggaaaagcc
ttacccacctcaagtgtaaatgaaacccaactaggatctttaaactggac
tagcctatatattctgttacctggctaaataaaacaaaggattcactctc
gctcttggttgatgtttttcctaaatgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14993958_14995143
seq2: B6Ng01-043M23.g_67_1246

seq1  GAATTCCTGATCTTTCCAAGACTTTTTTCATTAATGGGTGTTGGATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAAGACTTTTTTCATTAATGGGTGTTGGATCTTG  50

seq1  TCAAATGCTTTTTCCACATCTAACGAGATGATCATGTGGTTTTTGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTTTTCCACATCTAACGAGATGATCATGTGGTTTTTGTCTTT  100

seq1  GAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACC  150

seq1  ATCCCTGCATCCCTGGAATAAAACCTATTTGGTCAGGACGGATGATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCATCCCTGGAATAAAACCTATTTGGTCAGGACGGATGATTGCT  200

seq1  TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGC  250

seq1  CTCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT  300

seq1  CTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGGTGGGCCATTTTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGGTGGGCCATTTTCTTAA  350

seq1  TTGATGTGATAAGTCAAGGCATAGCTCAACCTGGGCACTTACATCTTGGG  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCATAAGTCAAGGCATAGCTCAACCTGGGCACTTACATCTTGGG  400

seq1  TGGCTGGGCCTGAATAAAAAATAAAAAACAAAACAAAAACAAAGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGCCTGAATAAAAAATAAAAAACAAAACAAAAACAAAGAAAACA  450

seq1  AAAAACAAAAAATTATCTGAGAACTATCCAACTAAGAGGAACCTCTCGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAATTATCTGAGAACTATCCAACTAAGAGGAACCTCTCGCG  500

seq1  GGTCTCTTTTTCAGTTCCTGCCACATAAATTCTTTCCTGTGCCAATATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTTTTCAGTTCCTGCCACATAAATTCTTTCCTGTGCCAATATGC  550

seq1  TTTGGGTCAGTGTCTTAGCAGAACAAGAGAGACAGAGGGCATCACTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCAGTGTCTTAGCAGAACAAGAGAGACAGAGGGCATCACTAAGA  600

seq1  AATCTCAGCTCCATGAAAACACACCTAAGGTCACTAAGCCTCAGCATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCTCCATGAAAACACACCTAAGGTCACTAAGCCTCAGCATCTG  650

seq1  CTCTTCCCAGTTAAGCTGCCTTGAATAAAACTTTCTTACTCCTCTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCAGTTAAGCTGCCTTGAATAAAACTTTCTTACTCCTCTCCTTT  700

seq1  AGTCGTCAGAATGCGCTGGAGTTTTAGTCATAGCATCATGATAACAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTCAGAATGCGCTGGAGTTTTAGTCATAGCATCATGATAACAACCT  750

seq1  TACAGAGAAAGAGAATTTTGAAATTATTTCTATTTTGTTCTGCTGGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAAGAGAATTTTGAAATTATTTCTATTTTGTTCTGCTGGTTTC  800

seq1  GTTTGGTTTGAGACAATGTCTCACACTATAACCTAAGCTGGAGCTCATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTGAGACAATGTCTCACACTATAACCTAAGCTGGAGCTCATTG  850

seq1  TACAGCTAAAGCCGACCTCAAACTGACAGCAATCTTCACACCACAGCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTAAAGCCGACCTCAAACTGACAGCAATCTTCACACCACAGCCTC  900

seq1  CCAACTGCTTAGATTATAGGTGTGAATCCATACCTGGTGATCAATCTGTT  950
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  CCAACTGCTTAGATTATA-GTGTGAATCCATACCTGGTGATC-ATCTGTT  948

seq1  TCATACTATTTGATTCTGTTTTATCCATTCTTTCACTATCTATAAAATTC  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCATACTATTTGATTCTGTTTTATCCATCCTTTCACTATCTATAAAATTC  998

seq1  AACTCCTGCTCATGCC-ATAAGAAGAC-TGATCTTGCTTTATA-GAAAAG  1047
      |||||||||||||||| |||||||||| ||||||||||||||| ||||||
seq2  AACTCCTGCTCATGCCAATAAGAAGACTTGATCTTGCTTTATAGGAAAAG  1048

seq1  CCTTACCCAACTCAAAAGTGTAAAATGAAA-CCAACTAAGATCTTTAAAC  1096
      ||||||||| |||  |||||| |||||||| ||||||| |||||||||||
seq2  CCTTACCCACCTC--AAGTGT-AAATGAAACCCAACTAGGATCTTTAAAC  1095

seq1  TGAACTAG-CTATAATTATCTGTTTTTATCCTTGCTAAATAAACAAAGGG  1145
      || ||||| |||| ||  ||||||     ||| ||||||||||  || ||
seq2  TGGACTAGCCTAT-ATATTCTGTT----ACCTGGCTAAATAAAACAAAGG  1140

seq1  GATCACTCT-GCT-TTGTTTGAATGTTTTTTTCTTAAATGTTG  1186
        ||||||| ||| ||| ||||   | |||||| |||||||||
seq2  ATTCACTCTCGCTCTTGGTTGA---TGTTTTTCCTAAATGTTG  1180


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