BAC Information

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BAC

Clone NameB6Ng01-043N20
Chromosome5 (Build37)
Map Location 15,112,621 - 15,139,210
singlet/doubletdoublet
Overlap geneSpeer4d
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043N20.bB6Ng01-043N20.g
ACCDH869796DH869797
length7791,167
definitionDH869796|Mus musculus domesticus DNA, BAC clone: B6Ng01-043N20, 5' end.DH869797|Mus musculus domesticus DNA, BAC clone: B6Ng01-043N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,112,621 - 15,113,411)(15,138,039 - 15,139,210)
sequence
gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgc
aagaaacatatcgtgcaaatgaaacggaagcagcactgaaagtctgagta
gccggggggcatccctgcacatgtgcctgtgggtagctgacagatcagct
ggtttaaaagcaaggctggtggtctagtcaatcatggtcgctgttctagt
gctaaaccagattctggagaaagctctattgttgttaagacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctttcgtcttagctttgtctctgtaactccttccatgggtat
tttgttccctattctgacactactgcatatgccagcaagattttgctgaa
aggaccttgatatagctgtcttgtgaggctatgccagtacctggcaaaca
gaagtggatgctcacagtcatttataggatgcagcacagggcctccaatg
gagaagctagagaaagcacccaaggagctgaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtacccccagaacttgtgtctcta
gctgcatatatagcagaagatggcctagtcggccatcattgggaagagag
gcccctaggtcttgcaaactttatatgccccagtacagggccaagaaatg
ggagtgggtgggtgggggagcacggcgaggagaaggtatagagaacttta
gggatagcattttgaaatgtaaataaaaa
gaattcacatggaattagatttttcaaatttttcactttattaagaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagcactctggaaattctatgatggtgctaacaatttcaggaatttcc
aacaggacgcataacaagaaaaatccatatagtacaagtcttaggtgtta
gctgaatgttcaaatcagaaagcaaagagaagaatttgcattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
ggtacagcaggatattaggccatgcaatcgtatacggagatacagaagct
acatagtacttcaagtgttgctatcatatgtgtctaagtgacattttaca
gattaatgccaagtaaaatcaaaatatagtcccctacccattacatctta
aaacacaatgatctatcaacagttgccatttcacagcagaaagaaagcag
taggtataaattgaacacagaactgcttctcttgtaagaaatgaacacag
atatatagatacatgtatacttatacattctctttgaaattcaaggtgat
taatttgctttactaccatataaaaacaatctggctgtggtcagggaaaa
aagctcattttccacatttaaaaagtacattggctgggtgtggtggtgca
cgcctttaatcccagctctggggaggcaggggcaggcagatttctgagtt
ggaggccagcctggtctacaaagtgagttccaggacagccagggctatac
agagaaactctgtctagaaaaaccaaaaaaaagtacacattgtttctggc
aaggaattacatccatagaccacttagacctatgtgatttggctagaatg
cagacataccctaattacacacctttaatcccaaacaatgaaagtaagtt
cgtttatagaaggaagagtcatgtttgtaagtgacatctaatgaggggca
aagtgataattcagagagataacagaatgagtcagaagaataggatattg
cccaattctatgagacagcgaggaaagaaaggacttaaaagagcctgggg
agggaggacagaattaaaagaacaggttaccggtgagaacagaacaagtc
caagaattagaagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15112621_15113411
seq2: B6Ng01-043N20.b_1_789

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAT  50
                                                    ||||
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAT  50

seq1  TCCTCTTCTCAGGTACAACTGGGTCTTTGTCAAGTTGATAAAATGCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTCAGGTACAACTGGGTCTTTGTCAAGTTGATAAAATGCAAGA  100

seq1  AACATATCGTGCAAATGAAACGGAAGCAGCATTGAAAGTCTGAGTAGCCG  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACATATCGTGCAAATGAAACGGAAGCAGCACTGAAAGTCTGAGTAGCCG  150

seq1  GTGGGCATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTGGTT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTGGTT  200

seq1  TAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTAGTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTAGTGCTA  250

seq1  AACCAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAGCTT  300

seq1  GGTGGCTGATTATGGGATGGATCATCGGGTGGGGTAGTCTCTGGATGGTC  350
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  GGTGGCTGATTATGGGATGGATCCCCGGGTGGGGTAGTCTCTGGATGGTC  350

seq1  CATCCTTTCTTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGCTTTTTTG  400
      ||||||||| ||||||||||||||| |||||||||||||||| | |||||
seq2  CATCCTTTCGTCTTAGCTTTGTCTCTGTAACTCCTTCCATGGGTATTTTG  400

seq1  TTCCCTATTCTGACACTACTGCATATGCCAGCAAGATTTTGCTGAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATTCTGACACTACTGCATATGCCAGCAAGATTTTGCTGAAAGGA  450

seq1  CCTTGATATAGCTGTCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAGA  500
      |||||||||||||||||||||||||||||||||| ||||||||  |||||
seq2  CCTTGATATAGCTGTCTTGTGAGGCTATGCCAGTACCTGGCAA--ACAGA  498

seq1  AGTGGATGCTCACAGTCATCTATAGGATGGAGCACAGGGCCTCCAATGGA  550
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  AGTGGATGCTCACAGTCATTTATAGGATGCAGCACAGGGCCTCCAATGGA  548

seq1  GAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTATAAG  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTATAGG  598

seq1  TGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCTAGC  650
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGAACAACAATATGAACTAACCAGTACCCCCAGAACTTGTGTCTCTAGC  648

seq1  TGCATATGTAGCAGAAGATGGCCTAGTCAGCCAGCATTGGGAAGAGAGGC  700
      ||||||| |||||||||||||||||||| |||| ||||||||||||||||
seq2  TGCATATATAGCAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGC  698

seq1  CCCTAGGTCTTGCAAACTTTATATGCCGCAGTACAGGGCCAAGAAATAGG  750
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  CCCTAGGTCTTGCAAACTTTATATGCCCCAGTACAGGGCCAAGAAATGGG  748

seq1  AGTGGGTGGGTGGGGGAGCAGGGCGAGGGGAGGGTATAGAG  791
      |||||||||||||||||||| ||||||| || |||||||||
seq2  AGTGGGTGGGTGGGGGAGCACGGCGAGGAGAAGGTATAGAG  789

seq1: chr5_15138039_15139210
seq2: B6Ng01-043N20.g_69_1235 (reverse)

seq1  GTCTCTTCTTATTCTCTGGCGTGTTCTGTCCTCACCTGTAACCTG-TCTC  49
      ||||||||| |||||  | | |||||||| |||||| |||||||| ||| 
seq2  GTCTCTTCTAATTCTTGGACTTGTTCTGTTCTCACCGGTAACCTGTTCTT  50

seq1  TGTAATCTGCCCTCCCTCCCCA-ACTCTCTTAAGTCCTTTCTTTCCTCGC  98
      |  | |||| ||||||||||||  |||| |||||||||||||||||||||
seq2  TTAATTCTGTCCTCCCTCCCCAGGCTCTTTTAAGTCCTTTCTTTCCTCGC  100

seq1  TGTCCTCATAAGAATTGGGC-ATATCCTAT--CTCTGACTCATTCTGTTA  145
      ||| ||||| |||||||||| |||||||||   |||||||||||||||||
seq2  TGT-CTCAT-AGAATTGGGCAATATCCTATTCTTCTGACTCATTCTGTTA  148

seq1  TCTCTCTGAATTATCACTTTGCCCCTCAATTAGATGTCACTTACAAACAT  195
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTCTCTGAATTATCACTTTGCCCCTC-ATTAGATGTCACTTACAAACAT  197

seq1  GACTCTTCCTTCTATAAATGAACCTTACTTTCATTGTTTGGGATTAAACG  245
      |||||||||||||||||| ||| ||||||||||||||||||||||||| |
seq2  GACTCTTCCTTCTATAAACGAA-CTTACTTTCATTGTTTGGGATTAAAGG  246

seq1  TGTGTAATTAGGGTATGTCTGCATTCTAGCCAAATCACATAGGTCTAAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATTAGGGTATGTCTGCATTCTAGCCAAATCACATAGGTCTAAGT  296

seq1  GGTCTATGGATGTGATTCCTTGCCAGAGACAATGTGTACTTTTTTTTTTT  345
      ||||||||||||| ||||||||||||| |||||||||||         ||
seq2  GGTCTATGGATGTAATTCCTTGCCAGAAACAATGTGTAC---------TT  337

seq1  TTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTGGCTATCCTG  395
      |||||||||||||| |||||| ||||||||||||||| |||||| |||||
seq2  TTTTTTGGTTTTTCTAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTG  387

seq1  GAACTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCTGCCTGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCTGCCTGCC  437

seq1  TCTGCCTCCCCAGAGCTGGGATTAAAGGCGTGTGCCACCACACCCGGCCA  495
       |||||||||||||||||||||||||||||||  ||||||||||| ||||
seq2  CCTGCCTCCCCAGAGCTGGGATTAAAGGCGTGCACCACCACACCCAGCCA  487

seq1  ATGTACTTTTTAAATGTGGAAAATGAGCTTTTTTCCCTGACCACAGCGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGTACTTTTTAAATGTGGAAAATGAGCTTTTTTCCCTGACCACAGCCAG  537

seq1  ATTGTTTTTATATGGTAGTAAAGCAAATTAACCACCTTGAATTTCAAAGA  595
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTGTTTTTATATGGTAGTAAAGCAAATTAATCACCTTGAATTTCAAAGA  587

seq1  GAATGTATAAGTGTACATGT-TCTATATATCTGTGTTCATTTCTTACAAG  644
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  GAATGTATAAGTATACATGTATCTATATATCTGTGTTCATTTCTTACAAG  637

seq1  AGAAGCAGTTCTGTGTTCAATTTATACCTACTGCTTTCTTCCTGCTGTGA  694
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAGCAGTTCTGTGTTCAATTTATACCTACTGCTTTCTTTCTGCTGTGA  687

seq1  AATGGCAACTGTTGATAGATCATTGTGTTTTAAGATGTAATGGGTAGGGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAACTGTTGATAGATCATTGTGTTTTAAGATGTAATGGGTAGGGG  737

seq1  ACTATATTTTTATTTTACTTGGCATTAATCTGTAAAATGTCACTTAGACA  794
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTTTGATTTTACTTGGCATTAATCTGTAAAATGTCACTTAGACA  787

seq1  TATATGATAGCAACACTTGAAGTACTATGTAGCTTCTGTATCTCCGTATA  844
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATAGCAACACTTGAAGTACTATGTAGCTTCTGTATCTCCGTATA  837

seq1  TGATTGCATGGCCTAATATCCTCTTGTACCTGGACTCCTCATAACTGTAT  894
       |||||||||||||||||||||  ||||||||||||||||||||| ||||
seq2  CGATTGCATGGCCTAATATCCTGCTGTACCTGGACTCCTCATAACGGTAT  887

seq1  TTAAATTAACAACACTCACAGATCCTAAAGTTACTGAAAATGTAAAT--T  942
      |||||||||||||||||||||||||||||||||||||||||| ||||  |
seq2  TTAAATTAACAACACTCACAGATCCTAAAGTTACTGAAAATGCAAATTCT  937

seq1  TCTCTTTGCTTTCTGATTTGAAAATTCAGCTAACACCTAAGACTTGTACT  992
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTCTTTGCTTTCTGATTTGAACATTCAGCTAACACCTAAGACTTGTACT  987

seq1  ATATGGATTTTTCTTGTTATGTGTCCTGTTGGAAATTCCTGAAATTGTTA  1042
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATGGATTTTTCTTGTTATGCGTCCTGTTGGAAATTCCTGAAATTGTTA  1037

seq1  GCACCATCATAGAATTTCCAGAGTACTTGAAGTTGTATTTGCATAGTTGG  1092
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCACCATCATAGAATTTCCAGAGTGCTTGAAGTTGTATTTGCATAGTTGG  1087

seq1  ACATAAAAGAATTTGTAGACAATGATTCTCTCTTTTTTAATAAAATGAAA  1142
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  ACATAAAAGAATTTGTAGACAATGATTCTCTCTTTCTTAATAAAGTGAAA  1137

seq1  AATTTGAAAAATTTAATTCCATGTGAATTC  1172
      |||||||||||| |||||||||||||||||
seq2  AATTTGAAAAATCTAATTCCATGTGAATTC  1167