BAC Information

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BAC

Clone NameB6Ng01-044A23
Chromosome5 (Build37)
Map Location 135,966,737 - 135,967,802
singlet/doubletsinglet
Overlap geneHip1
Upstream geneClip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121
Downstream geneCcl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044A23.bB6Ng01-044A23.g
ACCDH869926DH869927
length1,0571,168
definitionDH869926|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A23, 5' end.DH869927|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatgctcttgtttccatggcaagtcatctccctgaaccaccac
caactccttcaatggcttaattacgttatatatgtgttttgcctgcatgc
catgtgcatgtttgatgcacgtaggggtcagaagatgacacaggattccc
ttgaattggggatgaaccacagatggtcatgaaccacagtgtgggttccg
ggaactgaacccaggtcctctgtaagaacagccagtactcttagcctttg
agccatctccctaacccttggttggtttctttctttctttctttctttct
ttcttccttcctttctttctttctctttctctcttcctttctctttcttt
ctttctttcttcctctctctcctttccttccttccttccattctttcttc
cttcctttctttttcttttttttagatggttacactatgtaaccctagct
agcctgtaaatctctataaccaggtaaactaggtgggtctcaaacccata
gagatctgcttgcctctacctccttagtgctgggactaaagacctccaat
agccctgacaggctctcctgtttggagccagggctggcctcaagcatact
gtgtatctgaggacaagctcgacaagactttcaaaggaagaagggatagg
gtccacccaataccaagaagcaaacactgggtctctttgtacctactgga
aggagcctgctgggcaggagaggatctcccctcctctggaatcagagttc
ttatctatgaagttgggacgggttttcccgaaagccttctggtgggtggg
ggcgagcatgcaatcagagtgatctaaaagaggaagttatgtagggagct
aggtgtggtggctcctggccaaagcctagcacccgggcacaaggcaggag
aaccagggtttccagagtagccaaggctgcacagccaggagctaccagca
agacactgctcaaggatggaagttgtgaccattaagcctggatggaatgg
gtgacagatcaaggattcccaacagtgctttctattgagttgtggctttt
tttgttt
gaattcactacatatatgcatctaccagactggcctcaaactcacaaagg
tctgttgggagtagcatttttgtgcactgtgtgaaggcgtgtctcttttc
ttcctcacctgcctaaggcattctctgattggctttaatgaagagctgat
ggcctatagctaggcgagaaaaggaagggagacttggggcagagagaggg
ttactgggagaagtatcaggcagggggttgggaaaagaagtcagtcatac
aaggactgagtgggaggtaattagccacgtggcaaacatggattagaata
aacgggttaattaagttatatgagctaattgggaggtagcaagctagggc
ctaaacgttccataaataaataaataaacaaatagaaatttccgtgtcat
tattcaggagctggcgggtgggggcagtcaggtgatagagatctgcctgc
ctctgcccttcttggattaaaggcatgtgccatcatgcctggattacttt
ttaaaaccattattacatttatttattttgtgtgtatacacacgtgtgtg
aatgttcatgtatgtgtgcgtgtgtgcaccatgatgcacatgtgtgagag
tgttcatgtgtgtgtgtgcaccatgatgcacatgtgtgaatgttcatgtg
tgtgtgtgtatgtttgtgtgcactgtggggctttgggctatgcacagaca
ggctggtctctagttgagctgaggtctgaaccccgcccggaagggtgata
attcacctacatgataaggtaggcgttccctcatgctcctggaactgtgg
ctcctgcctaagttaccactccccacaggccccacaagagaagcatggct
agaagtcagcagcaatggcccaagcttctgaccttcaggctaaactcctc
ccagttacctagcacagtaaagaccataaaaggggctgcttgggctctcc
tctctactcctctctctcttactcctcactctcaccgtctcactcctctc
cttggtcttctctcatccgcactcttctctctctctttgtctctccaacg
cccgcccctcctttctcatgcttccccctccctccttcacttgcccttac
tcctcttccccagctacgttatctccctcttttcacctcctctttgctcc
gcgattttaaaaaagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135966737_135967802
seq2: B6Ng01-044A23.b_47_1103

seq1  GAATTCAAATGCTCTTGTTTCCATGGCAAGTCATCTCCCTGAACCACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGCTCTTGTTTCCATGGCAAGTCATCTCCCTGAACCACCAC  50

seq1  CAACTCCTTCAATGGCTTAATTACGTTATATATGTGTTTTGCCTGCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTTCAATGGCTTAATTACGTTATATATGTGTTTTGCCTGCATGC  100

seq1  CATGTGCATGTTTGATGCACGTAGGGGTCAGAAGATGACACAGGATTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCATGTTTGATGCACGTAGGGGTCAGAAGATGACACAGGATTCCC  150

seq1  TTGAATTGGGGATGAACCACAGATGGTCATGAACCACAGTGTGGGTTCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGGGGATGAACCACAGATGGTCATGAACCACAGTGTGGGTTCCG  200

seq1  GGAACTGAACCCAGGTCCTCTGTAAGAACAGCCAGTACTCTTAGCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAACCCAGGTCCTCTGTAAGAACAGCCAGTACTCTTAGCCTTTG  250

seq1  AGCCATCTCCCTAACCCTTGGTTGGTTTCTTTCTTTCTTTCTTTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCCCTAACCCTTGGTTGGTTTCTTTCTTTCTTTCTTTCTTTCT  300

seq1  TTCTTCCTTCCTTTCTTTCTTTCTCTTTCTCTCTTCCTTTCTCTTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTCCTTTCTTTCTTTCTCTTTCTCTCTTCCTTTCTCTTTCTTT  350

seq1  CTTTCTTTCTTCCTCTCTCTCCTTTCCTTCCTTCCTTCCATTCTTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTCCTCTCTCTCCTTTCCTTCCTTCCTTCCATTCTTTCTTC  400

seq1  CTTCCTTTCTTTTTCTTTTTTTTAGATGGTTACACTATGTAACCCTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCTTTTTCTTTTTTTTAGATGGTTACACTATGTAACCCTAGCT  450

seq1  AGCCTGTAAATCTCTATAACCAGGTAAACTAGGTGGGTCTCAAACCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAAATCTCTATAACCAGGTAAACTAGGTGGGTCTCAAACCCATA  500

seq1  GAGATCTGCTTGCCTCTACCTCCTTAGTGCTGGGACTAAAGACCTCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCTTGCCTCTACCTCCTTAGTGCTGGGACTAAAGACCTCCAAT  550

seq1  AGCCCTGACAGGCTCTCCTGTTTGGAGCCAGGGCTGGCCTCAAGCATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGACAGGCTCTCCTGTTTGGAGCCAGGGCTGGCCTCAAGCATACT  600

seq1  GTGTATCTGAGGACAAGCTCGACAAGACTTTCAAAGGAAGAAGGGATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTGAGGACAAGCTCGACAAGACTTTCAAAGGAAGAAGGGATAGG  650

seq1  GTCCACCCAATACCAAGAAGCAAACACTGGGTCTCTTTGTACCTACTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCAATACCAAGAAGCAAACACTGGGTCTCTTTGTACCTACTGGA  700

seq1  AGGAGCCTGCTGGGCAGGAGAGGATCTCCCCTCCTCTGGAATCAGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGCTGGGCAGGAGAGGATCTCCCCTCCTCTGGAATCAGAGTTC  750

seq1  TTATCTATGAAGTTGGGACGGGTTTTCCCGAAAGCCTTCTGGTGGGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATGAAGTTGGGACGGGTTTTCCCGAAAGCCTTCTGGTGGGTGGG  800

seq1  GGCGAGCATGCAATCAGAGTGATCTAAAAGAGGAAGTTATGTAGGGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGCATGCAATCAGAGTGATCTAAAAGAGGAAGTTATGTAGGGAGCT  850

seq1  AGGTGTGGTGGCTCCTGGCCAAAAGCCTAGCACCCGGGCACAAAGGCAGG  900
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  AGGTGTGGTGGCTCCTGGCC-AAAGCCTAGCACCCGGGCAC-AAGGCAGG  898

seq1  AGAACCAGGGTTTCCAGAGTAGCCAAGGCTGCACAGCCAGGAGCTACCAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAACCAGGGTTTCCAGAGTAGCCAAGGCTGCACAGCCAGGAGCTACC-A  947

seq1  GCAAGACACTGCTCAAGGATGGAAGTTTGTGAACCATTAAGCCTGGATGG  1000
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  GCAAGACACTGCTCAAGGATGGAAG-TTGTG-ACCATTAAGCCTGGATGG  995

seq1  AAATGGTTGACAGATCAAGGATTCCCAACAGTTGCTTTTCTATTTGAGTG  1050
       ||||| |||||||||||||||||||||||| ||| |||||| |||||| 
seq2  -AATGGGTGACAGATCAAGGATTCCCAACAG-TGC-TTTCTA-TTGAGTT  1041

seq1  TGGGCTTTTGTTGTTT  1066
        ||||||| ||||||
seq2  GTGGCTTTTTTTGTTT  1057