BAC Information

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BAC

Clone NameB6Ng01-044B24
Chromosome5 (Build37)
Map Location 19,610,527 - 19,747,343
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044B24.bB6Ng01-044B24.g
ACCDH869974DH869975
length1,196986
definitionDH869974|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B24, 5' end.DH869975|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,610,527 - 19,611,743)(19,746,320 - 19,747,343)
sequence
gaattccttttcctttgtcatcctgatgaggctcagctcgcacccctctc
tatgcctcactatctttatttgtatggtcagagtattatactaaatggac
tccaaggagcttttcaggaagcctgtctttttaaccagtgctttctaagt
caattctcaatttaagtgtgccatggaaagcttgccacgcagacgggtat
agcaactagaaaatgcttaattataacaagcacttcatgtccattgtgaa
atgcaattgaggctgtccaaagtcatctttagctccagatatatttcagt
ggtcgagaacttgctaagcacgagcaaagccttagtgtttccaagtcctt
tattcccagccagcacacctgcccctctgccttaccagtgcagaaagcaa
gaagtgcaaagctctcagttcagctccctgcagccgcacagacgataact
tccattttacattcattctccaccggtaccgcccactgaggtacctcctc
cacggcacatgcattgcctcccaataactatgtaatttccactcaaggga
ttttgaagttttaattaaattaaattctggagagaaaggcccatacacat
gtacatctcagaattctaaagtgggcgttcacttttttctgtgccaaagc
aaacaaaaagggagggaaatgtgatgcagcgttcccagacagttgtgaca
tggcaggtgagagagagttaggctgggaggtaaaaggactaacactgagg
cacctgtgcttgcaggcctggaaccctggatgttgctcagggctttcttt
atttcattcatagatggaaaccattatattactgactttcgtagaaaata
catggttttaaaagatccctcactagagtctcacacagtgcataaatact
gaaacagaaaactctggcactgtccagacgcttcattatgctttccagag
gtcttcaagatacacagctttgtctctctagtctgtttcaatgatcttta
ctgatacaataaggaccatttcatataatagatctatgctttatagatat
aatatcataaatcctagaactataggagctctcatggggcagcaatatgt
tacatctttctccccccaagctcacgttcattcactggatgagtgtgagg
gtatacgcattgcgagtgtgttcatagaggtgtatgactaaatata
gaattcattggtcatttactattccacatggtaaatgctcttaccagaag
gcaacacttttcaagagaacacaaacagaaaataacagctctgtcaccta
ggaacatctgatgacatttaccaaatctaaagtgacaggttagttactct
ataccagcgcgaaggagacaatggatacatttttgtttatattctgtatt
tttttttttacttagttaaaagttatttatgtgggtgtgtgtgttgtacc
tccgtgtatttctatgcaccatgagtataatgcccatagaggccagagag
ctgccgacacccaggaactggagctgtaggcagctgtgagacatctgatg
gggaacaaggacaaaatcctagtcctctgcaagaatggtcagtgctctaa
ccactgagaaaacctcattatccccttattagttttacttttgacttaaa
ataatactttgttttatgcatagcaattcaatttacacgttaactgacac
tataatagaatgatttgatacagttttaaatggaaggaaaatgggaaaaa
tggacaactttttaataagaaaaatacaagggctatttattgcctagaag
catatgaaatatttaataaattgaaggtaggtttttttttttaattcctt
ttggccactgtttagagaatactatttaggtaccatgtgtctgaatgatg
ttagcaaaaagtatctaccacactatttattatgatgttgaaatcatgga
atgttgagaaagaactcaagcattgtaactattagaaagctgaattttgg
gatcggtcaagtaaaatcataatatgttcatttaagttcctcttaggtca
tcattatatcccaagctccctcggagtcttagaggcaacaccatgttctt
ccatgtcctaagttgatgggcagacttttaaacttgggtcttaaggaaga
tccagagtgctgctacctgaatggagtgtggtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19610527_19611743
seq2: B6Ng01-044B24.b_44_1239

seq1  GAATTCCTTTTCCTTTGTCATCCTGATGAGGCTCAGCTCGCACCCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCCTTTGTCATCCTGATGAGGCTCAGCTCGCACCCCTCTC  50

seq1  TATGCCTCACTATCTTTATTTGTATGGTCAGAGTATTATACTAAATGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCACTATCTTTATTTGTATGGTCAGAGTATTATACTAAATGGAC  100

seq1  TCCAAGGAGCTTTTCAGGAAGCCTGTCTTTTTAACCAGTGCTTTCTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGCTTTTCAGGAAGCCTGTCTTTTTAACCAGTGCTTTCTAAGT  150

seq1  CAATTCTCAATTTAAGTGTGCCATGGAAAGCTTGCCACGCAGACGGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCAATTTAAGTGTGCCATGGAAAGCTTGCCACGCAGACGGGTAT  200

seq1  AGCAACTAGAAAATGCTTAATTATAACAAGCACTTCATGTCCATTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTAGAAAATGCTTAATTATAACAAGCACTTCATGTCCATTGTGAA  250

seq1  ATGCAATTGAGGCTGTCCAAAGTCATCTTTAGCTCCAGATATATTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTGAGGCTGTCCAAAGTCATCTTTAGCTCCAGATATATTTCAGT  300

seq1  GGTCGAGAACTTGCTAAGCACGAGCAAAGCCTTAGTGTTTCCAAGTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGAGAACTTGCTAAGCACGAGCAAAGCCTTAGTGTTTCCAAGTCCTT  350

seq1  TATTCCCAGCCAGCACACCTGCCCCTCTGCCTTACCAGTGCAGAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCAGCCAGCACACCTGCCCCTCTGCCTTACCAGTGCAGAAAGCAA  400

seq1  GAAGTGCAAAGCTCTCAGTTCAGCTCCCTGCAGCCGCACAGACGATAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCAAAGCTCTCAGTTCAGCTCCCTGCAGCCGCACAGACGATAACT  450

seq1  TCCATTTTACATTCATTCTCCACCGGTACCGCCCACTGAGGTACCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTACATTCATTCTCCACCGGTACCGCCCACTGAGGTACCTCCTC  500

seq1  CACGGCACATGCATTGCCTCCCAATAACTATGTAATTTCCACTCAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCACATGCATTGCCTCCCAATAACTATGTAATTTCCACTCAAGGGA  550

seq1  TTTTGAAGTTTTAATTAAATTAAATTCTGGAGAGAAAGGCCCATACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGTTTTAATTAAATTAAATTCTGGAGAGAAAGGCCCATACACAT  600

seq1  GTACATCTCAGAATTCTAAAGTGGGCGTTCACTTTTTTCTGTGCCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTCAGAATTCTAAAGTGGGCGTTCACTTTTTTCTGTGCCAAAGC  650

seq1  AAACAAAAAGGGAGGGAAATGTGATGCAGCGTTCCCAGACAGTTGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAGGGAGGGAAATGTGATGCAGCGTTCCCAGACAGTTGTGACA  700

seq1  TGGCAGGTGAGAGAGAGTTAGGCTGGGAGGTAAAAGGACTAACACTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTGAGAGAGAGTTAGGCTGGGAGGTAAAAGGACTAACACTGAGG  750

seq1  CACCTGTGCTTGCAGGCCTGGAACCCTGGATGTTGCTCAGGGCTTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGCTTGCAGGCCTGGAACCCTGGATGTTGCTCAGGGCTTTCTTT  800

seq1  ATTTCATTCATAGATGGAAACCATTATATTACTGACTTTCGTAGAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTCATAGATGGAAACCATTATATTACTGACTTTCGTAGAAAATA  850

seq1  CATGGTTTTAAAAGATCCCTCACTAGAGTCTCACACAGTGCATAAATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTTAAAAGATCCCTCACTAGAGTCTCACACAGTGCATAAATACT  900

seq1  GAAACAGAAAACTCTGGCACTGTCCAGAAGGCTTCATTATGCTTTCCAGA  950
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  GAAACAGAAAACTCTGGCACTGTCCAG-ACGCTTCATTATGCTTTCCAGA  949

seq1  GGTCTTCAAGATACACAGCTTTTGTTCTCTCTAGTTCTGTTTCAATGATC  1000
      ||||||||||||||||||||||   ||||||||| |||||||||||||||
seq2  GGTCTTCAAGATACACAGCTTT--GTCTCTCTAG-TCTGTTTCAATGATC  996

seq1  TTTAACTGATACAATAAGGAACCATTTCATAT-ATAGATCTATGCTTTTA  1049
      ||| ||||||||||||||| |||||||||||| |||||||||||| ||||
seq2  TTT-ACTGATACAATAAGG-ACCATTTCATATAATAGATCTATGC-TTTA  1043

seq1  TAGATTATAATATCATAAATCCTAGGACTTTATAGGAGCTCTCATGGGGC  1099
      |||| |||||||||||||||||||| ||  ||||||||||||||||||||
seq2  TAGA-TATAATATCATAAATCCTAGAAC--TATAGGAGCTCTCATGGGGC  1090

seq1  AGGCAATATGTTACATTCTTCTCTCCCCCACAGCTTCCACTTTCATTCAC  1149
      | ||||||||||||| |||| ||||||||  ||||  ||| |||||||||
seq2  A-GCAATATGTTACA-TCTT-TCTCCCCCCAAGCT--CACGTTCATTCAC  1135

seq1  TGTGTATGAGTGTGTGAGTGTATACGCATTTGCGAGTGTGTGTTCAT-GA  1198
        || ||||  ||||||| ||||||||| ||||||  |||||||||| ||
seq2  --TGGATGA--GTGTGAGGGTATACGCA-TTGCGA--GTGTGTTCATAGA  1178

seq1  GTGTGTATGACTAAGTATA  1217
      | |||||||||||| ||||
seq2  G-GTGTATGACTAAATATA  1196

seq1: chr5_19746320_19747343
seq2: B6Ng01-044B24.g_66_1051 (reverse)

seq1  AAACACACACACACACACACACACACACACACACACACACACACACTCCA  50
                                        | |||| |||||||||
seq2  ----------------------------------AAACAC-CACACTCCA  15

seq1  TTCAGGTAGCAGCACTCTTGGATCTTCCTTAAGACCCAAGTTTTAAAAGT  100
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TTCAGGTAGCAGCACTC-TGGATCTTCCTTAAGACCCAAG-TTTAAAAGT  63

seq1  CTGCCCATCAACTTAGGACATGGAAAGAACATGGTGTTGCCTCTAAGACT  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGCCCATCAACTTAGGACATGG-AAGAACATGGTGTTGCCTCTAAGACT  112

seq1  CCGAGGGAGCTTGGGATATAATGATGACCTAAGAGGAACTTAAATGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGAGCTTGGGATATAATGATGACCTAAGAGGAACTTAAATGAACA  162

seq1  TATTATGATTTTACTTGACCGATCCCAAAATTCAGCTTTCTAATAGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATTTTACTTGACCGATCCCAAAATTCAGCTTTCTAATAGTTAC  212

seq1  AATGCTTGAGTTCTTTCTCAACATTCCATGATTTCAACATCATAATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGAGTTCTTTCTCAACATTCCATGATTTCAACATCATAATAAAT  262

seq1  AGTGTGGTAGATACTTTTTGCTAACATCATTCAGACACATGGTACCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTAGATACTTTTTGCTAACATCATTCAGACACATGGTACCTAAA  312

seq1  TAGTATTCTCTAAACAGTGGCCAAAAGGAATTAAAAAAAAAAACCTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTCTCTAAACAGTGGCCAAAAGGAATTAAAAAAAAAAACCTACCT  362

seq1  TCAATTTATTAAATATTTCATATGCTTCTAGGCAATAAATAGCCCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTATTAAATATTTCATATGCTTCTAGGCAATAAATAGCCCTTGTA  412

seq1  TTTTTCTTATTAAAAAGTTGTCCATTTTTCCCATTTTCCTTCCATTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTATTAAAAAGTTGTCCATTTTTCCCATTTTCCTTCCATTTAAA  462

seq1  ACTGTATCAAATCATTCTATTATAGTGTCAGTTAACGTGTAAATTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCAAATCATTCTATTATAGTGTCAGTTAACGTGTAAATTGAATT  512

seq1  GCTATGCATAAAACAAAGTATTATTTTAAGTCAAAAGTAAAACTAATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCATAAAACAAAGTATTATTTTAAGTCAAAAGTAAAACTAATAAG  562

seq1  GGGATAATGAGGTTTTCTCAGTGGTTAGAGCACTGACCATTCTTGCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATGAGGTTTTCTCAGTGGTTAGAGCACTGACCATTCTTGCAGAG  612

seq1  GACTAGGATTTTGTCCTTGTTCCCCATCAGATGTCTCACAGCTGCCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGATTTTGTCCTTGTTCCCCATCAGATGTCTCACAGCTGCCTACA  662

seq1  GCTCCAGTTCCTGGGTGTCGGCAGCTCTCTGGCCTCTATGGGCATTATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTTCCTGGGTGTCGGCAGCTCTCTGGCCTCTATGGGCATTATAC  712

seq1  TCATGGTGCATAGAAATACACGGAGGTACAACACACACACCCACATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGCATAGAAATACACGGAGGTACAACACACACACCCACATAAAT  762

seq1  AACTTTTAACTAAGTAAAAAAAAAAATACAGAATATAAACAAAAATGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAACTAAGTAAAAAAAAAAATACAGAATATAAACAAAAATGTAT  812

seq1  CCATTGTCTCCTTCGCGCTGGTATAGAGTAACTAACCTGTCACTTTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCTCCTTCGCGCTGGTATAGAGTAACTAACCTGTCACTTTAGAT  862

seq1  TTGGTAAATGTCATCAGATGTTCCTAGGTGACAGAGCTGTTATTTTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAATGTCATCAGATGTTCCTAGGTGACAGAGCTGTTATTTTCTGT  912

seq1  TTGTGTTCTCTTGAAAAGTGTTGCCTTCTGGTAAGAGCATTTACCATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTCTTGAAAAGTGTTGCCTTCTGGTAAGAGCATTTACCATGTG  962

seq1  GAATAGTAAATGACCAATGAATTC  1024
      ||||||||||||||||||||||||
seq2  GAATAGTAAATGACCAATGAATTC  986