BAC Information

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BAC

Clone NameB6Ng01-045D13
Chromosome5 (Build37)
Map Location 100,356,928 - 100,488,395
singlet/doubletdoublet
Overlap geneLOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1
Upstream genePrkg2, LOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364
Downstream geneBC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045D13.bB6Ng01-045D13.g
ACCDH870741DH870742
length1,044998
definitionDH870741|Mus musculus domesticus DNA, BAC clone: B6Ng01-045D13, 5' end.DH870742|Mus musculus domesticus DNA, BAC clone: B6Ng01-045D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,356,928 - 100,357,991)(100,487,380 - 100,488,395)
sequence
gaattctcaaagaattaataaaaacattctgtttaagaaatgatcagaaa
caaggaaaaagctgattaggaacttaatcatttaaaagatgcgtctgaaa
tacccaaccccaccggtttttgcattgttttttgttttttgtttttgctt
tttaacagttatttcatttctttttatttatgatatgagtctgtacctat
gaacgcacatgaatgcaatgcccatggagaccagaagagggcactggatc
ccatgatctggaatgtgaggcagttgggagctgcccagtgtagatgctgg
gatcaaagcagaggtctacagcagcagcaagcactaacccaacaactggg
ccatctctccagaccccccatttcttttacttggaacagatcacaaatgt
ctttgtcaccattgctcagggggaaatgctgatctccgtatcattccagt
ttagtgtgtgctgccaaagcagatgtctcggtggtccttcctaagtttaa
agaagagaccatcagctggcgtggtggcgcacgcctttgatcccagcact
tgggaggcagaggcagacggatttctgagtttgagaccaacctggtctac
agagtgagttccaggacagccagggctacacagagaaaccctgtctttaa
aaaagaagaagaagaagaagagaccatcagcctggaatgattggtgcggg
cctttaatcccagcactctggaggcagaggccagcctggggagcgaggag
ggagggaatatcaccattctgataggacagaagcgcacagcacacatctg
acactctcggaaacaccaaggcttgaccctgaagcagttccacatccatt
tctaattccctggaaacagagcggttgacatgctcagttaatacatttaa
gtgtgggtacaaaggtagataggatagccatgacagtagcacagcataga
aagacccatagactaatgagttagagatgcgtcatcatcaacatgcactg
gtgacgctgcatccagaaaagaatcatgctcgctttgagacgtt
gaattcctaggcaggcaagccactgcagcttctacctggacgcagggcat
gatttacaacatgctcagggcctgctaagtccccaggtctcgcccgttct
cagaggctgtgggatgcgatgagggaagtcctaacctgtttcctcagcag
gctgacgtcctgctgacactcctcctcctcccagtgggtctgcaggtact
ccttgacattttctttgatgtacggaaataaaacatcctggaaagaaaaa
gagtaaaacaagaattaaaaaacaagagctggttatttttctgaactaca
tcacacaatctgagtcttttatagtctcaccttaactaacaaacagcaca
aaggaagtcccagtggaaactgctgccgtgggcctgttcccagtgggaca
caaagggaaactaagaaaccaaggggccaggaaccggccagctggtcctg
cctgtaataatgacgctttgttggagtacagtcacaatcatttagttaga
cggtttctggctatttggggccacagtggtcgagttaagaccatttaacc
cacaaagcctaaaacatgttccccagccgtgtctacaaatctgctaactc
tcagaccattgtttgcttgctttattttctggattatctgactttatttt
atgtatctgagtgtttacctttgtacgcctgcctcagacctggcattaag
acggttgtaaggcaccgtgtagatgcttgggtgctgggaactgaacgtga
gagcagcaagtggttttaactaccacacctctccatcccgagggcatgga
tgtcagctgggaaggtatccagatggcaacgttaaagggacagtacaaca
acagactgggtcagacttcctccagagcatcctcatagctatgcagctag
tgtgtgcctacagacagagatactcagatgactaaacctatatgatatag
tgagtccagctacaggagaccctatctcaggaaaaaggaaagattgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_100356928_100357991
seq2: B6Ng01-045D13.b_44_1087

seq1  GAATTCTCAAAGAATTAATAAAAACATTCTGTTTAAGAAATGATCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAGAATTAATAAAAACATTCTGTTTAAGAAATGATCAGAAA  50

seq1  CAAGGAAAAAGCTGATTAGGAACTTAATCATTTAAAAGATGCGTCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAAAGCTGATTAGGAACTTAATCATTTAAAAGATGCGTCTGAAA  100

seq1  TACCCAACCCCACCGGTTTTTGCATTGTTTTTTGTTTTTTGTTTTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACCCCACCGGTTTTTGCATTGTTTTTTGTTTTTTGTTTTTGCTT  150

seq1  TTTAACAGTTATTTCATTTCTTTTTATTTATGATATGAGTCTGTACCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGTTATTTCATTTCTTTTTATTTATGATATGAGTCTGTACCTAT  200

seq1  GAACGCACATGAATGCAATGCCCATGGAGACCAGAAGAGGGCACTGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCACATGAATGCAATGCCCATGGAGACCAGAAGAGGGCACTGGATC  250

seq1  CCATGATCTGGAATGTGAGGCAGTTGGGAGCTGCCCAGTGTAGATGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCTGGAATGTGAGGCAGTTGGGAGCTGCCCAGTGTAGATGCTGG  300

seq1  GATCAAAGCAGAGGTCTACAGCAGCAGCAAGCACTAACCCAACAACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGCAGAGGTCTACAGCAGCAGCAAGCACTAACCCAACAACTGGG  350

seq1  CCATCTCTCCAGACCCCCCATTTCTTTTACTTGGAACAGATCACAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCAGACCCCCCATTTCTTTTACTTGGAACAGATCACAAATGT  400

seq1  CTTTGTCACCATTGCTCAGGGGGAAATGCTGATCTCCGTATCATTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCACCATTGCTCAGGGGGAAATGCTGATCTCCGTATCATTCCAGT  450

seq1  TTAGTGTGTGCTGCCAAAGCAGATGTCTCGGTGGTCCTTCCTAAGTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGTGCTGCCAAAGCAGATGTCTCGGTGGTCCTTCCTAAGTTTAA  500

seq1  AGAAGAGACCATCAGCTGGCGTGGTGGCGCACGCCTTTGATCCCAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGACCATCAGCTGGCGTGGTGGCGCACGCCTTTGATCCCAGCACT  550

seq1  TGGGAGGCAGAGGCAGACGGATTTCTGAGTTTGAGACCAACCTGGTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGACGGATTTCTGAGTTTGAGACCAACCTGGTCTAC  600

seq1  AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTTAA  650

seq1  AAAAGAAGAAGAAGAAGAAGAGACCATCAGCCTGGAATGATTGGTGCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAGAAGAAGAAGAGACCATCAGCCTGGAATGATTGGTGCGGG  700

seq1  CCTTTAATCCCAGCACTCTGGAGGCAGAGGCCAGCCTGGGGAGCGAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTCTGGAGGCAGAGGCCAGCCTGGGGAGCGAGGAG  750

seq1  GGAGGGAATATCACCATTCTGATAGGACAGAAGCGCACAGCACACATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAATATCACCATTCTGATAGGACAGAAGCGCACAGCACACATCTG  800

seq1  AACACTCTCGGAAACACCAA-GCCTGACCCTGAAGCAGTTCCACATCCAT  849
       ||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  -ACACTCTCGGAAACACCAAGGCTTGACCCTGAAGCAGTTCCACATCCAT  849

seq1  TTCTAATTCCCTGGAAACAGAGCGGTTGACATGCTCAGTTAAATACATTT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTAATTCCCTGGAAACAGAGCGGTTGACATGCTCAGTT-AATACATTT  898

seq1  AAGTGTGGGTAACAAAGGTAAGATAGGATAGCCATGACAGGTAGCACAGC  949
      |||||||||| |||||||| ||||||||||||||||||| ||||||||||
seq2  AAGTGTGGGT-ACAAAGGT-AGATAGGATAGCCATGACA-GTAGCACAGC  945

seq1  ATAGAAAAGAACCCATAGACTAAATGAAGCTGAAGAGATGCGTCCATCCA  999
      |||||||   ||||||||||| |||| || |  |||||||||| ||||  
seq2  ATAGAAA--GACCCATAGACT-AATG-AGTT--AGAGATGCGT-CATC--  986

seq1  ATCCAACATGCACCTGTGGACGCTGGCATCACAGGAGAAGAACCATGGCT  1049
      || ||||||||| |||  |||||| ||||| || || ||||| ||| |||
seq2  AT-CAACATGCA-CTGGTGACGCT-GCATC-CA-GAAAAGAATCAT-GCT  1030

seq1  CGCTTTTGAGACGTT  1064
      ||| |||||||||||
seq2  CGC-TTTGAGACGTT  1044

seq1: chr5_100487380_100488395
seq2: B6Ng01-045D13.g_66_1063 (reverse)

seq1  TGCATATCTTTTTCTTTTTTTCCTTGAGATAGGGTCTCCCTTTGTAGCTG  50
      |||| |||  |||| |||||  | |||||||||||||||   ||||||| 
seq2  TGCA-ATC--TTTCCTTTTT--CCTGAGATAGGGTCTCC---TGTAGCT-  41

seq1  GGACTCACTATATCATATAGGTTTAGTCAATCTTGAGTAATTCCTCCTGT  100
      |||||||||||||||||||||||||||| ||| ||||||  |    ||||
seq2  GGACTCACTATATCATATAGGTTTAGTC-ATC-TGAGTATCT----CTGT  85

seq1  CTGTTAGGCACACAACTAGCTGCATAGCCTATTGAGGATGCTCTGGAGGA  150
      ||| ||||||||| ||||||||||||| ||| ||||||||||||||||||
seq2  CTG-TAGGCACAC-ACTAGCTGCATAG-CTA-TGAGGATGCTCTGGAGGA  131

seq1  AGTCTGACCAAGTCTGTTGTTGTACTGTCCCTTTAACGTTGCCATCTGGA  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGACCCAGTCTGTTGTTGTACTGTCCCTTTAACGTTGCCATCTGGA  181

seq1  TACCTT-CCAGCTGACATCCATGCCCTCGGGATGGAGAGGTGTGGTAGTT  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCCCAGCTGACATCCATGCCCTCGGGATGGAGAGGTGTGGTAGTT  231

seq1  AAAACCACTTGCTGCTCTCACGTTCAGTTCCCAGCACCCAAGCATCTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACTTGCTGCTCTCACGTTCAGTTCCCAGCACCCAAGCATCTACA  281

seq1  CGGTGCCTTACAACCGTCTTAATGCCAGGTCTGAGGCAGGCGTACAAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCCTTACAACCGTCTTAATGCCAGGTCTGAGGCAGGCGTACAAAGG  331

seq1  TAAACACTCAGATACATAAAATAAAGTCAGATAATCCAGAAAATAAAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTCAGATACATAAAATAAAGTCAGATAATCCAGAAAATAAAGCA  381

seq1  AGCAAACAATGGTCTGAGAGTTAGCAGATTTGTAGACACGGCTGGGGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAATGGTCTGAGAGTTAGCAGATTTGTAGACACGGCTGGGGAAC  431

seq1  ATGTTTTAGGCTTTGTGGGTTAAATGGTCTTAACTCGACCACTGTGGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAGGCTTTGTGGGTTAAATGGTCTTAACTCGACCACTGTGGCCC  481

seq1  CAAATAGCCAGAAACCGTCTAACTAAATGATTGTGACTGTACTCCAACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCCAGAAACCGTCTAACTAAATGATTGTGACTGTACTCCAACAA  531

seq1  AGCGTCATTATTACAGGCAGGACCAGCTGGCCGGTTCCTGGCCCCTTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCATTATTACAGGCAGGACCAGCTGGCCGGTTCCTGGCCCCTTGGT  581

seq1  TTCTTAGTTTCCCTTTGTGTCCCACTGGGAACAGGCCCACGGCAGCAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTTTCCCTTTGTGTCCCACTGGGAACAGGCCCACGGCAGCAGTT  631

seq1  TCCACTGGGACTTCCTTTGTGCTGTTTGTTAGTTAAGGTGAGACTATAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGGACTTCCTTTGTGCTGTTTGTTAGTTAAGGTGAGACTATAAA  681

seq1  AGACTCAGATTGTGTGATGTAGTTCAGAAAAATAACCAGCTCTTGTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGATTGTGTGATGTAGTTCAGAAAAATAACCAGCTCTTGTTTTT  731

seq1  TAATTCTTGTTTTACTCTTTTTCTTTCCAGGATGTTTTATTTCCGTACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTGTTTTACTCTTTTTCTTTCCAGGATGTTTTATTTCCGTACAT  781

seq1  CAAAGAAAATGTCAAGGAGTACCTGCAGACCCACTGGGAGGAGGAGGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAATGTCAAGGAGTACCTGCAGACCCACTGGGAGGAGGAGGAGT  831

seq1  GTCAGCAGGACGTCAGCCTGCTGAGGAAACAGGTTAGGACTTCCCTCATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGGACGTCAGCCTGCTGAGGAAACAGGTTAGGACTTCCCTCATC  881

seq1  GCATCCCACAGCCTCTGAGAACGGGCGAGACCTGGGGACTTAGCAGGCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCACAGCCTCTGAGAACGGGCGAGACCTGGGGACTTAGCAGGCCC  931

seq1  TGAGCATGTTGTAAATCATGCCCTGCGTCCAGGTAGAAGCTGCAGTGGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGTTGTAAATCATGCCCTGCGTCCAGGTAGAAGCTGCAGTGGCT  981

seq1  TGCCTGCCTAGGAATTC  1016
      |||||||||||||||||
seq2  TGCCTGCCTAGGAATTC  998