BAC Information

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BAC

Clone NameB6Ng01-045E24
Chromosome5 (Build37)
Map Location 85,913,052 - 86,034,585
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045E24.bB6Ng01-045E24.g
ACCDH870802DH870803
length1,096302
definitionDH870802|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E24, 5' end.DH870803|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,913,052 - 85,914,176)(86,034,284 - 86,034,585)
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacatggagtggagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacaaaatataa
ttataaaaatcttcctgtccattggttgggtgcaaatatctgcatctaac
tttttcagctgcttgttgggtctttcagagggcagtcatgataaatccct
ttttgtgagccctcaatcaccacagtaatagtgtcaggccttgggacctc
tctttgagctggatcccattttgggcctgtcgctgtaccttcttttcctc
aggcttctctccatttccatccctgtaattctttcatacaggagcaatta
tgtatcagagatgtgactgtgggatggcaaccccacccctcacttgatat
cctgtcttcctgctggaggtgggctctataagttctctctccttactgtc
aggcatttcatctaaggtccctccctttgagtcctgagagtctctcacct
cccaggtctttggtgcatctggatggtcccccaacctcctatccctatct
tccaaggtttcctgtttccattctttctgctggccttcagagcttaagtt
ccttttcctcatcctataccagatcagggtccccacttccctgaagcagc
tgacccctatggttgaatttgggaaaggctgaaagaagctgagaagggaa
atcctgtaggaggaccagcagtctcaattattctggacccctgagatgtt
tcaaacactggaccaccagacagacagcatacacagctgatatgaggccc
ttcacacacacatagtaatggacttctgatatatgtccatcagagatgat
gcactaccctctagaaatgacattctactaagtgatagcatcacatgagc
taatactactttagccatgtatcatgcatcagtatttatctgtgattcag
aaaactttgtgccatcctcttctgtgtgataaatacccaattaaaa
cagacattttaaggtcaaagaacaagtgtggtgagagtgagataaaggtt
aagtttattacagtagggaagctgagtatgcagctttagcagtaggaagg
catttctacatgagatatattcatgacattgctattgcatttctcacaga
caccctttctagacttctgagagaaaagcaatggaaagaagcaagggatc
aaatacgaatctgacccactaaagtgacatagagcaaagacaataatttg
ctcttcagtaattatacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85913052_85914176
seq2: B6Ng01-045E24.b_46_1141

seq1  GAATTCTCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCAT  50

seq1  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCA  100

seq1  CCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150

seq1  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAAAATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAAAATATAA  200

seq1  TTATAAAAATCTTCCTGTCCATTGGTTGGGTGCAAATATCTGCATCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAATCTTCCTGTCCATTGGTTGGGTGCAAATATCTGCATCTAAC  250

seq1  TTTTTCAGCTGCTTGTTGGGTCTTTCAGAGGGCAGTCATGATAAATCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGCTGCTTGTTGGGTCTTTCAGAGGGCAGTCATGATAAATCCCT  300

seq1  TTTTGTGAGCCCTCAATCACCACAGTAATAGTGTCAGGCCTTGGGACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAGCCCTCAATCACCACAGTAATAGTGTCAGGCCTTGGGACCTC  350

seq1  TCTTTGAGCTGGATCCCATTTTGGGCCTGTCGCTGTACCTTCTTTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGCTGGATCCCATTTTGGGCCTGTCGCTGTACCTTCTTTTCCTC  400

seq1  AGGCTTCTCTCCATTTCCATCCCTGTAATTCTTTCATACAGGAGCAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTCTCCATTTCCATCCCTGTAATTCTTTCATACAGGAGCAATTA  450

seq1  TGTATCAGAGATGTGACTGTGGGATGGCAACCCCACCCCTCACTTGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGAGATGTGACTGTGGGATGGCAACCCCACCCCTCACTTGATAT  500

seq1  CCTGTCTTCCTGCTGGAGGTGGGCTCTATAAGTTCTCTCTCCTTACTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCCTGCTGGAGGTGGGCTCTATAAGTTCTCTCTCCTTACTGTC  550

seq1  AGGCATTTCATCTAAGGTCCCTCCCTTTGAGTCCTGAGAGTCTCTCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTCATCTAAGGTCCCTCCCTTTGAGTCCTGAGAGTCTCTCACCT  600

seq1  CCCAGGTCTTTGGTGCATCTGGATGGTCCCCCAACCTCCTATCCCTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCTTTGGTGCATCTGGATGGTCCCCCAACCTCCTATCCCTATCT  650

seq1  TCCAAGGTTTCCTGTTTCCATTCTTTCTGCTGGCCTTCAGAGCTTAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGTTTCCTGTTTCCATTCTTTCTGCTGGCCTTCAGAGCTTAAGTT  700

seq1  CCTTTTCCTCATCCTATACCAGATCAGGGTCCCCACTTCCCTGAAGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTCATCCTATACCAGATCAGGGTCCCCACTTCCCTGAAGCAGC  750

seq1  TGACCCCTATGGTTGAATTTGGGAAAGGCTGAAAGAAGCTGAGAAGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCTATGGTTGAATTTGGGAAAGGCTGAAAGAAGCTGAGAAGGGAA  800

seq1  ATCCTGTAGGAGGACCAGCAGTCTCAATTATTCTGGACCCCTGAGATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTAGGAGGACCAGCAGTCTCAATTATTCTGGACCCCTGAGATGTT  850

seq1  TCAAACACTGGACCACCAGACAGACAGCATACACCAGCTGATATGAGGCC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCAAACACTGGACCACCAGACAGACAGCATACA-CAGCTGATATGAGGCC  899

seq1  CTTCAACACACACATAGTAATGGACTTCTGATATATGTCCATTCAGAGAT  950
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTC-ACACACACATAGTAATGGACTTCTGATATATGTCCA-TCAGAGAT  947

seq1  GATGCACCTAACCCTCCTAGAAAATGACATTTCTTACTAAGTTGATAGCA  1000
      |||||||   ||||| |||| ||||||||||   ||||||| ||||||||
seq2  GATGCAC--TACCCT-CTAG-AAATGACATT--CTACTAAG-TGATAGCA  990

seq1  TTCAACATGAGCTTAATTACTACTTTAGCCAATGTATCATGCATTCAGTA  1050
      |   |||||||||  | ||||||||||||| |||||||||||| ||||||
seq2  T--CACATGAGCT--AATACTACTTTAGCC-ATGTATCATGCA-TCAGTA  1034

seq1  TTTATCCTGTGATTTTCCAGGAAGACTTTGTGCCACAATTCTTCTTCTGT  1100
      ||||| ||||||||   || ||| |||||||||||    || |||||  |
seq2  TTTAT-CTGTGATT---CA-GAAAACTTTGTGCCA----TCCTCTTC--T  1073

seq1  GTGTGATAAATTACCCATATTAAAA  1125
      |||||||||| |||||| |||||||
seq2  GTGTGATAAA-TACCCA-ATTAAAA  1096

seq1: chr5_86034284_86034585
seq2: B6Ng01-045E24.g_74_375 (reverse)

seq1  CACACACACACACACACACACACACACACACACATGTATAATTACTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACATGTATAATTACTGAAG  50

seq1  AGCAAATTATTGTCTTTGCTCTATGTCACTTTAGTGGGTCAGATTCGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTATTGTCTTTGCTCTATGTCACTTTAGTGGGTCAGATTCGTAT  100

seq1  TTGATCCCTTGCTTCTTTCCATTGCTTTTCTCTCAGAAGTCTAGAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCTTGCTTCTTTCCATTGCTTTTCTCTCAGAAGTCTAGAAAGGG  150

seq1  TGTCTGTGAGAAATGCAATAGCAATGTCATGAATATATCTCATGTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGAGAAATGCAATAGCAATGTCATGAATATATCTCATGTAGAAA  200

seq1  TGCCTTCCTACTGCTAAAGCTGCATACTCAGCTTCCCTACTGTAATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCTACTGCTAAAGCTGCATACTCAGCTTCCCTACTGTAATAAAC  250

seq1  TTAACCTTTATCTCACTCTCACCACACTTGTTCTTTGACCTTAAAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTTATCTCACTCTCACCACACTTGTTCTTTGACCTTAAAATGTC  300

seq1  TG  302
      ||
seq2  TG  302