BAC Information

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BAC

Clone NameB6Ng01-045J11
Chromosome4 (Build37)5 (Build37)
Map Location 6,404,826 - 6,405,89518,084,511 - 18,084,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf
Downstream geneLOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045J11.bB6Ng01-045J11.g
ACCDH871003DH871004
length1,042744
definitionDH871003|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J11, 5' end.DH871004|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,404,826 - 6,405,895)(18,084,511 - 18,084,575)
sequence
gaattctgattatgccaagaagccttcgtttctgttgcttatgttcttac
tcttgtctcttaccatctgattatctctggtatttgctggtcttgttgcc
tatggctgtagcttgttcctcctgcaaacctgtgtgtcagccctcttggg
agaccagttcgatctgggagaaacttgggtatggagagctgtggtacagg
gtcagctcaagggcgcagatagaaacaaaaaggactacatcccaggctgt
tccttagttcctgtgtcctgtgagctcaggcgggtcccttggaacagaag
tggtggtcttacctgtgctcacaggttgtgtcagcactcctggaagacta
gccctctcctggcggtatttgggtacggagtgctgtggcatatagtgtgc
tctgagtgcagactccagtccactttctgaccttattctttttccatagt
tttccatagtaaagatgctgctacccgctgagaggctgaacattctgaga
cattcgtgaataagcaacacccctggagaccaagtgctgacagcctggtg
acaaagcatcaagaacctggcgtggtgggggatgggccttcagacttctc
tcattttgtataatgtctatcacacttcaaaacattatggaattccatgt
aatgggactgcaatgcatgaattataaccacacaattacacagttgttac
catataactctagtataagtaacagtataccagaaacaataatctcctgg
aggtgacatgaaagaaaagacaacaaaagacacatacataggactttgtg
gaaattaaaaatatttgcatcaaaaaggcaacagaaggaaaagaagtcct
acagactctagagataccttgtatcgaaagagtactagagtgactagaca
gagggagggagagacagcattgatagatgagcaaaatgtgacatcatatt
cagctacatacagactgaaagattactacatgtggtatgtctgtgaggac
agctatagtatggtcctcaattcacctaagatcagattctgc
gaattctcacctgaggaataccgaatggcagagaagcagctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaccaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtataaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactct
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacattcacaaagg
aactcacacaatatgtactcactgataagtggatattagcccaaaaccta
ggatacccaagatataagatacaatttgctaaacacatgaaactcaagaa
gaatgaagactgaagtgtggacactatgcccctccttagaattggggaca
aaacacccatagaaggagttacagagacaaagttggagctgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6404826_6405895
seq2: B6Ng01-045J11.b_45_1086 (reverse)

seq1  GCAGAATCTGGAAATCCTAAAGGTGAAAATGGAGGACACAAAACTATAGC  50
      ||||||||||   ||| |  |||||  ||| ||||  || | ||||||||
seq2  GCAGAATCTG---ATCTT--AGGTG--AATTGAGG--ACCATACTATAGC  41

seq1  TGGTCCTCCACAGACATACCACATGTAGTATATCTTTTCAGTCTGTATGT  100
      | ||||| |||||||||||||||||||||| ||| |||||||||||||||
seq2  T-GTCCT-CACAGACATACCACATGTAGTA-ATC-TTTCAGTCTGTATGT  87

seq1  AGCCTGAATTATTGAATTGTCCACATTTTTGCTTCATTCTATCAATGCTG  150
      || ||||||   |||  ||| |||| |||||| ||| |||||||||||||
seq2  AG-CTGAAT--ATGA--TGT-CACA-TTTTGC-TCA-TCTATCAATGCTG  128

seq1  TCTCTCCCTCCCTCTGTCTAGTCACTCTAGTTACTCTTTTCGATACAAGG  200
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  TCTCTCCCTCCCTCTGTCTAGTCACTCTAG-TACTC-TTTCGATACAAGG  176

seq1  TATTCTCTTAGAGTCTGTAGGACTTCTTTTCCTTCTGTTGCCTTTTTGAT  250
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TCTC-TAGAGTCTGTAGGACTTCTTTTCCTTCTGTTGCCTTTTTGAT  224

seq1  GCAAAATATTTTTAATTTCCACAAAGTCCTATGTATGTGTCTTTTGTTGT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-AAATATTTTTAATTTCCACAAAGTCCTATGTATGTGTCTTTTGTTGT  273

seq1  CTTTTCTTTCATGTCACCTCCAGGAGATTATTGGTTTCTGGTATACTGTT  350
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTTCTTTCATGTCACCTCCAGGAGATTATT-GTTTCTGGTATACTGTT  322

seq1  ACTTATACTAGAGTTATATGGTAACAACTGTGTAATTGTGTGGTTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATACTAGAGTTATATGGTAACAACTGTGTAATTGTGTGGTTATAAT  372

seq1  TCATGCATTGCAGTCCCATTACATGGAATTCCATAATGTTTTGAAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATTGCAGTCCCATTACATGGAATTCCATAATGTTTTGAAGTGTG  422

seq1  ATAGACATTATACAAAATGAGAGAAGTCTGAAGGCCCATCCCCCACCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATTATACAAAATGAGAGAAGTCTGAAGGCCCATCCCCCACCACG  472

seq1  CCAGGTTCTTGATGCTTTGTCACCAGGCTGTCAGCACTTGGTCTCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCTTGATGCTTTGTCACCAGGCTGTCAGCACTTGGTCTCCAGGG  522

seq1  GTGTTGCTTATTCACGAATGTCTCAGAATGTTCAGCCTCTCAGCGGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTTATTCACGAATGTCTCAGAATGTTCAGCCTCTCAGCGGGTAG  572

seq1  CAGCATCTTTACTATGGAAAACTATGGAAAAAGAATAAGGTCAGAAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTTTACTATGGAAAACTATGGAAAAAGAATAAGGTCAGAAAGTG  622

seq1  GACTGGAGTCTGCACTCAGAGCACACTATATGCCACAGCACTCCGTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGTCTGCACTCAGAGCACACTATATGCCACAGCACTCCGTACCC  672

seq1  AAATACCGCCAGGAGAGGGCTAGTCTTCCAGGAGTGCTGACACAACCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCGCCAGGAGAGGGCTAGTCTTCCAGGAGTGCTGACACAACCTGT  722

seq1  GAGCACAGGTAAGACCACCACTTCTGTTCCAAGGGACCCGCCTGAGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGGTAAGACCACCACTTCTGTTCCAAGGGACCCGCCTGAGCTCA  772

seq1  CAGGACACAGGAACTAAGGAACAGCCTGGGATGTAGTCCTTTTTGTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACAGGAACTAAGGAACAGCCTGGGATGTAGTCCTTTTTGTTTCT  822

seq1  ATCTGCGCCCTTGAGCTGACCCTGTACCACAGCTCTCCATACCCAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGCCCTTGAGCTGACCCTGTACCACAGCTCTCCATACCCAAGTTT  872

seq1  CTCCCAGATCGAACTGGTCTCCCAAGAGGGCTGACACACAGGTTTGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGATCGAACTGGTCTCCCAAGAGGGCTGACACACAGGTTTGCAGG  922

seq1  AGGAACAAGCTACAGCCATAGGCAACAAGACCAGCAAATACCAGAGATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAGCTACAGCCATAGGCAACAAGACCAGCAAATACCAGAGATAA  972

seq1  TCAGATGGTAAGAGACAAGAGTAAGAACATAAGCAACAGAAACGAAGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGTAAGAGACAAGAGTAAGAACATAAGCAACAGAAACGAAGGCT  1022

seq1  TCTTGGCATAATCAGAATTC  1070
      ||||||||||||||||||||
seq2  TCTTGGCATAATCAGAATTC  1042

seq1: chr5_18084511_18084575
seq2: B6Ng01-045J11.g_387_451 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACAGAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65