BAC Information

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BAC

Clone NameB6Ng01-045K03
Chromosome5 (Build37)
Map Location 16,579,839 - 16,673,211
singlet/doubletdoublet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045K03.bB6Ng01-045K03.g
ACCDH871033DH871034
length1,0351,032
definitionDH871033|Mus musculus domesticus DNA, BAC clone: B6Ng01-045K03, 5' end.DH871034|Mus musculus domesticus DNA, BAC clone: B6Ng01-045K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,672,167 - 16,673,211)(16,579,839 - 16,580,879)
sequence
gaattctaggaaagaagtataacaggagaaactcatgctttcattttagc
ccaaacttcctccgatctagaaagtagaataaactgaagggattatggag
ttatttaacctgcaccaggtgtgtttagacggtaacctcacactttcttt
agttagtacattgtttatacctatttccattttatcccctactttaaact
ctgagtcatactaagaggagctacagttcttcctagttttggaagatgag
ttatatttacagataagaaacaaactctctgccaaggtttctatacactg
taatctgtgataccaatcatttatgacagatgataattttttccattgaa
tcattttcttgtttattcagccaacatttctttttttttattttgttttt
tttttctttatatattttctttaacctaattttttttacctccagaattt
cttttatttttcaggattgtttaactatcatgaatatttttacattggac
attttctttacttacatttcaaatgttttcccctttctaggtctccccat
aggaagccccctgtccccctcccacctccccctgcctgtatgagggtgca
cccctctactcctgtcttccctctctggcattccccaacaatggagcatt
gaacaccctcaggcccaatggcctctccttcagtgatgtccagcaagacc
atcctctgtcacatatgcagctggagccatgggtccctccatatgtacaa
tgtgtttggttgtctagtacccaggagctccggggaggggggtctcagcc
aacagttcttaatagcagtcagcatactctaggctctgtttcagttacag
taataattaacatatattcctgactattgcagatatcagattatatgtaa
tggtgaattctatggtgaatctgtatacaaataagaaaatagttcaggaa
caaacgatggtaaaattaatcctaaatttatttaactatatgatcctttt
gtattataaagtgtcatccccaataaaagtagttt
gaattctcacaatggtcctatcgtcatcagccctaccatcataggttatt
ctattctgtaagatgcttcttttatgtgtttacctgaagcctttggagaa
ctacatatcagatattctctggaatgtccctcaatatatgatgtgtatat
agcattctcatctctcatagtaatatagatagaaactactatcgcatctt
taaaatgatgtttttattaatgtaccaatttacatttttataatttttgt
gaactttatatatgagcaccatcattatgtcagtcttatcctctcctgta
acatttccaatgtgtcttaccccaaattcatgctctcttcttcattttca
ctgttatttatgtatatatgtatatctacacatatttgtgtacagatata
tacaatctataaagctcatttaacatacatcatatgtacacatgttcagg
aattgccacttggaatttgacatccattcagggcctcttccccagagaaa
actatttcttcctctctcattgagccattgacaccctgtagcttttttct
agatgtgggactatcacatgcacatatgatatgtgtttatttttcctttg
tggttattttgttgtttgattattgatgtattttatgactgtatttctgt
ttttatattattttcatgcaccattcattcttgtaccttgtaaaatatac
agaaactagtgttattacaacttttaaatttgaatagcaaagtttgtaag
ctgctaccatagttctatatggaaccttattcatccccttcttcaaagct
actttaggggcaaaccattctcctttctttgtactttgaatttagaagta
aaattatgttttctctatactcctcagaaataattgataataaatgtttc
aaattcccttgacatgattatggcatcataactatgtgatttattaatag
agggaagcacttaatttctgtgaagatcacacaaacctctttttcacaga
aatccttacattgaataatttctagagttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16672167_16673211
seq2: B6Ng01-045K03.b_45_1079 (reverse)

seq1  AAACTACATTTATTGGGTGATTGAACATTTATAATAACAAAAAGGATCAT  50
      ||||||| ||||||||| || |||   |||||||||   |||||||||||
seq2  AAACTACTTTTATTGGG-GA-TGACACTTTATAATA--CAAAAGGATCAT  46

seq1  ATAGTTTAAATAAAATTTAGGGATTAATATTTACCATCTGTTGTTCCTGA  100
      |||| |||||| ||||||| |||||||| |||||||||  ||||||||| 
seq2  ATAG-TTAAAT-AAATTTA-GGATTAAT-TTTACCATCGTTTGTTCCTG-  91

seq1  AACTATTTTCTTATTTGTATACAGATTCACCATAGAATTCACCATTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTCTTATTTGTATACAGATTCACCATAGAATTCACCATTACAT  141

seq1  ATAATTCTGATATCTGCAATAGTCAGGAATATATGTTAATTATTACTGTA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAA-TCTGATATCTGCAATAGTCAGGAATATATGTTAATTATTACTGTA  190

seq1  ACTGAAACAGAGCCTAGAGTATGCTGACTGCTATTAAGAACTGTTGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACAGAGCCTAGAGTATGCTGACTGCTATTAAGAACTGTTGGCTG  240

seq1  AGACCCCCCTCCCCGGAGCTCCTGGGTACTAGACAACCAAACACATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCCCTCCCCGGAGCTCCTGGGTACTAGACAACCAAACACATTGTA  290

seq1  CATATGGAGGGACCCATGGCTCCAGCTGCATATGTGACAGAGGATGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGAGGGACCCATGGCTCCAGCTGCATATGTGACAGAGGATGGTCT  340

seq1  TGCTGGACATCACTGAAGGAGAGGCCATTGGGCCTGAGGGTGTTCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACATCACTGAAGGAGAGGCCATTGGGCCTGAGGGTGTTCAATGC  390

seq1  TCCATTGTTGGGGAATGCCAGAGAGGGAAGACAGGAGTAGAGGGGTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTTGGGGAATGCCAGAGAGGGAAGACAGGAGTAGAGGGGTGCAC  440

seq1  CCTCATACAGGCAGGGGGAGGTGGGAGGGGGACAGGGGGCTTCCTATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACAGGCAGGGGGAGGTGGGAGGGGGACAGGGGGCTTCCTATGGG  490

seq1  GAGACCTAGAAAGGGGAAAACATTTGAAATGTAAGTAAAGAAAATGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTAGAAAGGGGAAAACATTTGAAATGTAAGTAAAGAAAATGTCCA  540

seq1  ATGTAAAAATATTCATGATAGTTAAACAATCCTGAAAAATAAAAGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAATATTCATGATAGTTAAACAATCCTGAAAAATAAAAGAAATT  590

seq1  CTGGAGGTAAAAAAAATTAGGTTAAAGAAAATATATAAAGAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTAAAAAAAATTAGGTTAAAGAAAATATATAAAGAAAAAAAAAA  640

seq1  CAAAATAAAAAAAAAGAAATGTTGGCTGAATAAACAAGAAAATGATTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAAAAAAAGAAATGTTGGCTGAATAAACAAGAAAATGATTCAA  690

seq1  TGGAAAAAATTATCATCTGTCATAAATGATTGGTATCACAGATTACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAATTATCATCTGTCATAAATGATTGGTATCACAGATTACAGTG  740

seq1  TATAGAAACCTTGGCAGAGAGTTTGTTTCTTATCTGTAAATATAACTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAACCTTGGCAGAGAGTTTGTTTCTTATCTGTAAATATAACTCAT  790

seq1  CTTCCAAAACTAGGAAGAACTGTAGCTCCTCTTAGTATGACTCAGAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAACTAGGAAGAACTGTAGCTCCTCTTAGTATGACTCAGAGTTT  840

seq1  AAAGTAGGGGATAAAATGGAAATAGGTATAAACAATGTACTAACTAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGGGATAAAATGGAAATAGGTATAAACAATGTACTAACTAAAGA  890

seq1  AAGTGTGAGGTTACCGTCTAAACACACCTGGTGCAGGTTAAATAACTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAGGTTACCGTCTAAACACACCTGGTGCAGGTTAAATAACTCCA  940

seq1  TAATCCCTTCAGTTTATTCTACTTTCTAGATCGGAGGAAGTTTGGGCTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCTTCAGTTTATTCTACTTTCTAGATCGGAGGAAGTTTGGGCTAA  990

seq1  AATGAAAGCATGAGTTTCTCCTGTTATACTTCTTTCCTAGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCATGAGTTTCTCCTGTTATACTTCTTTCCTAGAATTC  1035

seq1: chr5_16579839_16580879
seq2: B6Ng01-045K03.g_69_1100

seq1  GAATTCTCACAATGGTCCTATCGTCATCAGCCCTACCATCATAGGTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAATGGTCCTATCGTCATCAGCCCTACCATCATAGGTTATT  50

seq1  CTATTCTGTAAGATGCTTCTTTTATGTGTTTACCTGAAGCCTTTGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGTAAGATGCTTCTTTTATGTGTTTACCTGAAGCCTTTGGAGAA  100

seq1  CTACATATCAGATATTCTCTGGAATGTCCCTCAATATATGATGTGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATCAGATATTCTCTGGAATGTCCCTCAATATATGATGTGTATAT  150

seq1  AGCATTCTCATCTCTCATAGTAATATAGATAGAAACTACTATCGCATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTCATCTCTCATAGTAATATAGATAGAAACTACTATCGCATCTT  200

seq1  TAAAATGATGTTTTTATTAATGTACCAATTTACATTTTTATAATTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATGTTTTTATTAATGTACCAATTTACATTTTTATAATTTTTGT  250

seq1  GAACTTTATATATGAGCACCATCATTATGTCAGTCTTATCCTCTCCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTATATATGAGCACCATCATTATGTCAGTCTTATCCTCTCCTGTA  300

seq1  ACATTTCCAATGTGTCTTACCCCAAATTCATGCTCTCTTCTTCATTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCAATGTGTCTTACCCCAAATTCATGCTCTCTTCTTCATTTTCA  350

seq1  CTGTTATTTATGTATATATGTATATCTACACATATTTGTGTACAGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTTATGTATATATGTATATCTACACATATTTGTGTACAGATATA  400

seq1  TACAATCTATAAAGCTCATTTAACATACATCATATGTACACATGTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTATAAAGCTCATTTAACATACATCATATGTACACATGTTCAGG  450

seq1  AATTGCCACTTGGAATTTGACATCCATTCAGGGCCTCTTCCCCAGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCACTTGGAATTTGACATCCATTCAGGGCCTCTTCCCCAGAGAAA  500

seq1  ACTATTTCTTCCTCTCTCATTGAGCCATTGACACCCTGTAGCTTTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCTTCCTCTCTCATTGAGCCATTGACACCCTGTAGCTTTTTTCT  550

seq1  AGATGTGGGACTATCACATGCACATATGATATGTGTTTATTTTTCCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGGACTATCACATGCACATATGATATGTGTTTATTTTTCCTTTG  600

seq1  TGGTTATTTTGTTGTTTGATTATTGATGTATTTTATGACTGTATTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTTTGTTGTTTGATTATTGATGTATTTTATGACTGTATTTCTGT  650

seq1  TTTTATATTATTTTCATGCACCCATTCATTTCTTGTACCTTGT-ATATAT  699
      |||||||||||||||||||| ||||||| |||||||||||||| | ||||
seq2  TTTTATATTATTTTCATGCA-CCATTCA-TTCTTGTACCTTGTAAAATAT  698

seq1  ACAGAAACTAGTGTTTATTACAAACTCTTAATTCTG-ATAGC-AAGTTTG  747
      ||||||||||||| ||||||| |||| |||| | || ||||| |||||||
seq2  ACAGAAACTAGTG-TTATTAC-AACTTTTAAATTTGAATAGCAAAGTTTG  746

seq1  TAAGCTGCTACCATAGTTCTATATGGAACCTTATTCATCCCCATC-TCAA  796
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TAAGCTGCTACCATAGTTCTATATGGAACCTTATTCATCCCCTTCTTCAA  796

seq1  AGCTACTTAAGGGGCAAACCATTCTCCTTTCTTTGTACTTGGAATTTTAG  846
      |||||||| ||||||||||||||||||||||||||||||| ||||||   
seq2  AGCTACTTTAGGGGCAAACCATTCTCCTTTCTTTGTACTTTGAATTTAGA  846

seq1  AGTAAAATTATGTTTTCTCTATACTCCTCAGAAAACAATTGATAATAAAT  896
      ||||||||||||||||||||||||||||||| ||| ||||||||||||||
seq2  AGTAAAATTATGTTTTCTCTATACTCCTCAG-AAATAATTGATAATAAAT  895

seq1  GTTTCAGATTCCCTTGACATGAATTATGGCATCAATATACCTATGTGATT  946
      |||||| |||||||||||||| |||||||||||   ||| ||||||||||
seq2  GTTTCAAATTCCCTTGACATG-ATTATGGCATC---ATAACTATGTGATT  941

seq1  TATTAATAGAGGGAAGCAACTTTAATTTCTGTGAAGATCACACAAAACTC  996
      ||||||||||||||||||   ||||||||||||||||||||||||| |||
seq2  TATTAATAGAGGGAAGCA--CTTAATTTCTGTGAAGATCACACAAACCTC  989

seq1  TTTTTCACAGATATCCTTACA-TGAATAAATTTCTAAGAAGTTGAG  1041
      ||||||||||| ||||||||| ||||| ||||||||   |||||||
seq2  TTTTTCACAGAAATCCTTACATTGAAT-AATTTCTA--GAGTTGAG  1032