BAC Information

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BAC

Clone NameB6Ng01-045M17
Chromosome5 (Build37)16 (Build37)
Map Location 115,841,615 - 115,841,64969,535,712 - 69,536,813
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUbe3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
Downstream geneMsi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045M17.bB6Ng01-045M17.g
ACCDH871147DH871148
length4861,081
definitionDH871147|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M17, 5' end.DH871148|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,841,615 - 115,841,649)(69,535,712 - 69,536,813)
sequence
tgcactaaaatcatctgtcccagggcattgttttttggttggaagaattg
taatgactgctataatttctttagtggttataggactattcatacagttt
acctgatcttgacttaactttggtaattgacatcagtctagaaaaccatc
catttcatttagattttccaattttgtggagtacaggcttttgaagtaag
atttcatgattctttgattttcttcagtgtatgttgttatgtctttttgt
ttctagttgtgttaatgtgggtattgactatctgtctttcatttagtttg
gctaagagtttttctaccatcttgttgatttttctcaaggaaccagctct
tggtttcattgattctatgtatttttctctttgttttcagtctgtagttt
gatttccgttcttaattttattatttcctgtcatctactcttcctgaatg
gctgctgctgctgctgcttcctcctcctcctcctcc
gaattctctggcaacatgagctctgttaatttcttcaccactccttacta
ttgttattcaaagtaaatgtagcaatatgtttatgcttttgatttattgt
cattttttaaatagcattaagcattaaagtatctatatagtaaaggttaa
tataaacgtggtctctatttttaaaattgaaataagacattaccagaagt
ttaagagaaactagccttataagatttaaacaccacattaatatatttgt
tatgattaaatgaaatatatctaaaagattacttttttaaagaaatggga
attatttactagaaagtttggaagataatgacccaaacgctgatgagcct
agggctctggcatctggtgacaacactgttggttatgatatcatgttgac
aataatttttacaaaaaagaatacagatggccatacaggaaatgcaaatc
tgaggtagaggttagatatgttctctcatgagatcttacccccaagaatt
aatatttactctagagcctggcaccttacatcatcccgggatcttccata
aaattcatcagttaatatcttccaaaaaatatatatctattcctggggac
caaatgccaaacacatgagtctctaaggaccacagagcatacccaaagca
aagcaagcaccattaaacaatagattactacactttcttttgaatgctga
aaacattcacccctgttcttaatttctgttctttgtgactctgagtgtgg
caagtgattcttaaacaccagccttaaaggaggatctctttatagagttg
tctcaagtatatagggaattaggagattactgtagacatcttaactttag
gaaggattttagtaaaatatattgggaagctgaaggagatgaatggcaaa
tacatagatggtgtaaatctttagaataaataccaaaatttcatacaagt
taagctggaaataatatagctccttcaaccaatataacaattattcagtt
tttgttcgttgggaatattgcttaaaatcctttactatctcttaagttat
tctggacaaggaagggatagaccaggataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115841615_115841649
seq2: B6Ng01-045M17.b_504_536 (reverse)

seq1  GGAGGAGGAGGAGGAGAAGAAGCAGCAGCAGCAGC  35
      ||||||||||||||||  |||||||||||||||||
seq2  GGAGGAGGAGGAGGAG--GAAGCAGCAGCAGCAGC  33

seq1: chr16_69535712_69536813
seq2: B6Ng01-045M17.g_70_1150 (reverse)

seq1  ATTATACTGGTCTATCGCCTTACTTTGTCAGAATTACACTAAAGAGAATA  50
      ||||| |||||||||| |||| |||   ||||||   ||| ||||| |||
seq2  ATTATCCTGGTCTATC-CCTTCCTTGTCCAGAAT--AACTTAAGAG-ATA  46

seq1  GTAAAGGAATTATAAAGCATATATTCCCAAAGGAACAAAAACATGAAATA  100
      ||||||||  | | ||||| |||||||| || |||||||||| || ||||
seq2  GTAAAGGA--TTTTAAGCA-ATATTCCC-AACGAACAAAAAC-TG-AATA  90

seq1  ATTGTTATATGGGTTGGAAGGAAGCTATATTATTTTCCAGCTTAACTTGT  150
      |||||||||| |||| ||||| |||||||||| |||||||||||||||||
seq2  ATTGTTATATTGGTT-GAAGG-AGCTATATTA-TTTCCAGCTTAACTTGT  137

seq1  ATGAAATTTTGGTATTTTATTCTTAAAGATTTACCACCATCCTATGTAAT  200
      |||||||||||||| ||||||| |||||||||| |||||| |||||| ||
seq2  ATGAAATTTTGGTA-TTTATTC-TAAAGATTTA-CACCAT-CTATGT-AT  182

seq1  TTGCCATTCATCTCCTTCAGCTT-CCAATACTATTTTACTAAAATCCTTC  249
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TTGCCATTCATCTCCTTCAGCTTCCCAATA-TATTTTACTAAAATCCTTC  231

seq1  CTAAAGTTAAGATGTCTACAGTAATCCTCCTAATTCCCTATATACTTGAG  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTAAAGTTAAGATGTCTACAGTAAT-CTCCTAATTCCCTATATACTTGAG  280

seq1  ACAACTCTATAAAGAGATCCTCCTTTAAGGCTGGTTGTTTAAGAATCACT  349
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAACTCTATAAAGAGATCCTCCTTTAAGGCTGG-TGTTTAAGAATCACT  329

seq1  TGCCACACTCAGAGTCACAAAGAACAGAAAATGAAGAACAGGGGTGAATG  399
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  TGCCACACTCAGAGTCACAAAGAACAG-AAATTAAGAACAGGGGTGAATG  378

seq1  TTTTCAGCATTCAAAAGAAAGTGTAGTAATCTATTGTTTAATGGTGCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCATTCAAAAGAAAGTGTAGTAATCTATTGTTTAATGGTGCTTG  428

seq1  CTTTGCTTTGGGTATGCTCTGTGGTCCTTAGAGACTCATGTGTTTGGCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTGGGTATGCTCTGTGGTCCTTAGAGACTCATGTGTTTGGCAT  478

seq1  TTGGTCCCCAGGAATAGATATATATTTTTTGGAAGATATTAACTGATGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCCAGGAATAGATATATATTTTTTGGAAGATATTAACTGATGAA  528

seq1  TTTTATGGAAGATCCCGGGATGATGTAAGGTGCCAGGCTCTAGAGTAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGAAGATCCCGGGATGATGTAAGGTGCCAGGCTCTAGAGTAAAT  578

seq1  ATTAATTCTTGGGGGTAAGATCTCATGAGAGAACATATCTAACCTCTACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCTTGGGGGTAAGATCTCATGAGAGAACATATCTAACCTCTACC  628

seq1  TCAGATTTGCATTTCCTGTATGGCCATCTGTATTCTTTTTTGTAAAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTGCATTTCCTGTATGGCCATCTGTATTCTTTTTTGTAAAAATT  678

seq1  ATTGTCAACATGATATCATAACCAACAGTGTTGTCACCAGATGCCAGAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAACATGATATCATAACCAACAGTGTTGTCACCAGATGCCAGAGC  728

seq1  CCTAGGCTCATCAGCGTTTGGGTCATTATCTTCCAAACTTTCTAGTAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTCATCAGCGTTTGGGTCATTATCTTCCAAACTTTCTAGTAAAT  778

seq1  AATTCCCATTTCTTTAAAAAAGTAATCTTTTAGATATATTTCATTTAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCATTTCTTTAAAAAAGTAATCTTTTAGATATATTTCATTTAATC  828

seq1  ATAACAAATATATTAATGTGGTGTTTAAATCTTATAAGGCTAGTTTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAATATATTAATGTGGTGTTTAAATCTTATAAGGCTAGTTTCTCT  878

seq1  TAAACTTCTGGTAATGTCTTATTTCAATTTTAAAAATAGAGACCACGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCTGGTAATGTCTTATTTCAATTTTAAAAATAGAGACCACGTTT  928

seq1  ATATTAACCTTTACTATATAGATACTTTAATGCTTAATGCTATTTAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACCTTTACTATATAGATACTTTAATGCTTAATGCTATTTAAAAA  978

seq1  ATGACAATAAATCAAAAGCATAAACATATTGCTACATTTACTTTGAATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATAAATCAAAAGCATAAACATATTGCTACATTTACTTTGAATAA  1028

seq1  CAATAGTAAGGAGTGGTGAAGAAATTAACAGAGCTCATGTTGCCAGAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTAAGGAGTGGTGAAGAAATTAACAGAGCTCATGTTGCCAGAGAA  1078

seq1  TTC  1102
      |||
seq2  TTC  1081