BAC Information

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BAC

Clone NameB6Ng01-046A13
Chromosome5 (Build37)
Map Location 140,683,876 - 140,831,856
singlet/doubletdoublet
Overlap geneMad1l1, Ftsj2, Nudt1, Snx8
Upstream geneUnc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270
Downstream geneEif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046A13.bB6Ng01-046A13.g
ACCDH871317DH871318
length459286
definitionDH871317|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A13, 5' end.DH871318|Mus musculus domesticus DNA, BAC clone: B6Ng01-046A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,831,392 - 140,831,856)(140,683,876 - 140,684,161)
sequence
ctttctttatacactcaggctggcccagtttgagctcatactagagacag
tcctcctaacttagcctctcaagtgctgggagcccagacctaggttttat
tccctgaccctgggattcttctcctgtctcttgtctcttgtttgaatgtc
cagagtggatttgtttgtgattgacaaagcaagacgttcacaggctgggc
atcattttaaagaggcctccttgtgtgacctggaggctttgtgtacctct
gtctgtaagtccacgggagatgaaagcttttctttcatggggttatggtg
gagttcagagcgtgacagtgtgtgtgcctgtgttaggaatccgcaccttg
tcctctctagacagcactgtgaacaggggccagcccaagggttcttaatt
gtatgtggaagttcccacaactcttcttggcaagcagggtctgtggtggg
tgggtagga
attaagacagcaagcccactgtttcgcctgacattttttttgctcaggtt
ttcttctacatttttaccaggagttttcacagggccctgtgctggatgtt
ttccttggattttgttgctgtatttctcatttaatttttctcctgaactt
ttggccaggaggtggtgatgcaggcctttaatcctagccgttgggaggca
ggagcaggagaatctcttgagtccaggtcagccagggctacacagaataa
ctctgccttgggaaaaaaagaagggagggagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140831392_140831856
seq2: B6Ng01-046A13.b_44_508 (reverse)

seq1  TCCTACCCACCCACCACAGACCCTGCTTGCCAAGAAGAGTTGTGGGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCACCCACCACAGACCCTGCTTGCCAAGAAGAGTTGTGGGAACT  50

seq1  TCCACATACAATTAAGAACCCTTGGGCTGGCCCCTGTTCACAGTGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATACAATTAAGAACCCTTGGGCTGGCCCCTGTTCACAGTGCTGTC  100

seq1  TAGAGAGGACAAGGTGCGGATTCCTAACACAGGCACACACACTGTCACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGACAAGGTGCGGATTCCTAACACAGGCACACACACTGTCACGC  150

seq1  TCTGAACTCCACCATAACCCCATGAAAGAAAAGCTTTCATCTCCCGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTCCACCATAACCCCATGAAAGAAAAGCTTTCATCTCCCGTGGA  200

seq1  CTTACAGACAGAGGTACACAAAGCCTCCAGGTCACACAAGGAGGCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACAGAGGTACACAAAGCCTCCAGGTCACACAAGGAGGCCTCTT  250

seq1  TAAAATGATGCCCAGCCTGTGAACGTCTTGCTTTGTCAATCACAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATGCCCAGCCTGTGAACGTCTTGCTTTGTCAATCACAAACAAA  300

seq1  TCCACTCTGGACATTCAAACAAGAGACAAGAGACAGGAGAAGAATCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTGGACATTCAAACAAGAGACAAGAGACAGGAGAAGAATCCCAG  350

seq1  GGTCAGGGAATAAAACCTAGGTCTGGGCTCCCAGCACTTGAGAGGCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGAATAAAACCTAGGTCTGGGCTCCCAGCACTTGAGAGGCTAAG  400

seq1  TTAGGAGGACTGTCTCTAGTATGAGCTCAAACTGGGCCAGCCTGAGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGACTGTCTCTAGTATGAGCTCAAACTGGGCCAGCCTGAGTGTA  450

seq1  TAAAGAAAGGAATTC  465
      |||||||||||||||
seq2  TAAAGAAAGGAATTC  465

seq1: chr5_140683876_140684161
seq2: B6Ng01-046A13.g_73_358

seq1  ATTAAGACAGCAAGCCCACTGTTTCGCCTGACATTTTTTTTGCTCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACAGCAAGCCCACTGTTTCGCCTGACATTTTTTTTGCTCAGGTT  50

seq1  TTCTTCTACATTTTTACCAGGAGTTTTCACAGGGCCCTGTGCTGGATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATTTTTACCAGGAGTTTTCACAGGGCCCTGTGCTGGATGTT  100

seq1  TTCCTTGGATTTTGTTGCTGTATTTCTCATTTAATTTTTCTCCTGAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGATTTTGTTGCTGTATTTCTCATTTAATTTTTCTCCTGAACTT  150

seq1  TTGGCCAGGAGGTGGTGATGCAGGCCTTTAATCCTAGCCGTTGGGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGGAGGTGGTGATGCAGGCCTTTAATCCTAGCCGTTGGGAGGCA  200

seq1  GGAGCAGGAGAATCTCTTGAGTCCAGGTCAGCCAGGGCTACACAGAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGAGAATCTCTTGAGTCCAGGTCAGCCAGGGCTACACAGAATAA  250

seq1  CTCTGCCTTGGGAAAAAAAGAAGGGAGGGAGGGGGG  286
      ||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTGGGAAAAAAAGAAGGGAGGGAGGGGGG  286