BAC Information

Click to search

BAC

Clone NameB6Ng01-046C16
Chromosome4 (Build37)5 (Build37)
Map Location 81,054,431 - 81,055,00086,962,022 - 86,962,911
singlet/doubletsingletsinglet
Overlap geneMpdz
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046C16.bB6Ng01-046C16.g
ACCDH871410DH871411
length907880
definitionDH871410|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C16, 5' end.DH871411|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,054,431 - 81,055,000)(86,962,022 - 86,962,911)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaatgtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggaacctggtatctgtccagaaatttgtccatttcgcccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaagaaccaactcctcgtttggttaattctttgat
agttcttcttgtttcacttggttgatttcacccctgagtttgattattcc
tgccgtctactcctcttgggtgatttgcttccttttttctagagctttag
atgtgtt
gaattccatgctatgaggacagagtgacaagtatgtctctgctaccctct
atacaccttctgagtcatgcacacccatggggtttcctggataatgtaat
gagaagggagtgcatcaaaacagatttctaagcctttttttttttttttt
tttttttgtcatcaaattacattgggtcttgactgtagccacagaggtta
ttggtgggggaacagaaccaagatggctaacttttctccttctgtctgcc
caaccttggagaggcacacaaattgcttacatccaagctaatgggtatca
gagagggatgtggtgttaggagattccacatctaagccaagagtacttta
cttttcagcctaactctgaatataggtcttaatttgtccttcatgtaacc
agaagaaactatttattatctttgatttatttttaatttatagtagtctt
cataatgaataaactgtaatgttataggaaagataacactagaatcacaa
ggatacaatcaagagcacagtctcttctagtatgtagaaggcacagtagg
ggcacatcagaggacaagctggtgagactgagatcaatggcaagagagga
ttagaaaacaaatgctccccagaaccctgtgaacttacttccagaagcaa
tgagctgctgtgagcagccatgtgttgctgatgagtgtggctccacactg
atggccagccccaatgagctggaggctagcctgccatggcactctccttc
catagctgtttccctcccttggacatgcgttcagtagagagatgctggta
atgggatgtttgagatgacattcttattccacatctggcaagaaacacac
agtttaagaaaattctttactcagtacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81054431_81055000
seq2: B6Ng01-046C16.b_44_613 (reverse)

seq1  TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTA  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGACAGATACCAGGTTCCAAAGTTGAATCAGGATCAAGTTGACCTTCTA  50

seq1  AACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCC  100

seq1  AGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGA  150

seq1  CCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTCACAAGATA  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACATTTTCACAAGATA  200

seq1  GAAGTAGAAAGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAAGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  250

seq1  GATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAA  300

seq1  TTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAAC  350

seq1  CGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTT  400

seq1  TATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA  450

seq1  TCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTG  500

seq1  GATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCACGATAAAAGT  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGT  550

seq1  TCTGGAAAGATCAGGAATTC  570
      ||||||||||||||||||||
seq2  TCTGGAAAGATCAGGAATTC  570

seq1: chr5_86962022_86962911
seq2: B6Ng01-046C16.g_65_944

seq1  GAATTCCATGCTATGAGGACAGAGTGACAAGTATGTCTCTGCTACCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTATGAGGACAGAGTGACAAGTATGTCTCTGCTACCCTCT  50

seq1  ATACACCTTCTGAGTCATGCACACCCATGGGGTTTCCTGGATAATGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTTCTGAGTCATGCACACCCATGGGGTTTCCTGGATAATGTAAT  100

seq1  GAGAAGGGAGTGCATCAAAACAGATTTCTAAGCCTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAGTGCATCAAAACAGATTTCTAAGCCTTTTTTTTTTTTTTTT  150

seq1  TTTTTTTGTCATCAAATTACATTGGGTCTTGACTGTAGCCACAGAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTCATCAAATTACATTGGGTCTTGACTGTAGCCACAGAGGTTA  200

seq1  TTGGTGGGGGAACAGAACCAAGATGGCTAACTTTTCTCCTTCTGTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGGGAACAGAACCAAGATGGCTAACTTTTCTCCTTCTGTCTGCC  250

seq1  CAACCTTGGAGAGGCACACAAATTGCTTACATCCAAGCTAATGGGTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGGAGAGGCACACAAATTGCTTACATCCAAGCTAATGGGTATCA  300

seq1  GAGAGGGATGTGGTGTTAGGAGATTCCACATCTAAGCCAAGAGTACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGATGTGGTGTTAGGAGATTCCACATCTAAGCCAAGAGTACTTTA  350

seq1  CTTTTCAGCCTAACTCTGAATATAGGTCTTAATTTGTCCTTCATGTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGCCTAACTCTGAATATAGGTCTTAATTTGTCCTTCATGTAACC  400

seq1  AGAAGAAACTATTTATTATCTTTGATTTATTTTTAATTTATAGTAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACTATTTATTATCTTTGATTTATTTTTAATTTATAGTAGTCTT  450

seq1  CATAATGAATAAACTGTAATGTTATAGGAAAGATAACACTAGAATCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAATAAACTGTAATGTTATAGGAAAGATAACACTAGAATCACAA  500

seq1  GGATACAATCAAGAGCACAGTCTCTTCTAGTATGTAGAAGGCACAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAATCAAGAGCACAGTCTCTTCTAGTATGTAGAAGGCACAGTAGG  550

seq1  GGCACATCAGAGGACAAGCTGGTGAGACTGAGATCAATGGCAAGAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATCAGAGGACAAGCTGGTGAGACTGAGATCAATGGCAAGAGAGGA  600

seq1  TTAGAAAACAAATGCTCCCCAGAACCCTGTGAACTTACTTCCAGAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAACAAATGCTCCCCAGAACCCTGTGAACTTACTTCCAGAAGCAA  650

seq1  TGAGCTGCTGTGAGCAGCCATGTGTTGCTGATGAGTGTGGCTCCACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCTGTGAGCAGCCATGTGTTGCTGATGAGTGTGGCTCCACACTG  700

seq1  ATGGCCAGCCCCAATGAGCTGGAGGCTAGCCTGCCATGGCCACTCTCCTT  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGCCAGCCCCAATGAGCTGGAGGCTAGCCTGCCATGG-CACTCTCCTT  749

seq1  CCATAGCTGTTTCCCTCCCTTGGACAATGCGTTCAGTAGAAGAGGATGCT  800
      ||||||||||||||||||||||||| ||||||||||||| ||| ||||||
seq2  CCATAGCTGTTTCCCTCCCTTGGAC-ATGCGTTCAGTAG-AGA-GATGCT  796

seq1  GGTAATGGGATGTTTGAAGATGACATTCTTATCCCACATCCTGGCAAAGA  850
      |||||||||||||||| ||||||||||||||| |||||| ||||| ||||
seq2  GGTAATGGGATGTTTG-AGATGACATTCTTATTCCACAT-CTGGC-AAGA  843

seq1  AACACACAGTTTAAAGAAAATTCTTTACCTCAGTAACTTT  890
      |||||||||||| |||||||||||||| |||||| |||||
seq2  AACACACAGTTT-AAGAAAATTCTTTA-CTCAGT-ACTTT  880