BAC Information

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BAC

Clone NameB6Ng01-046C20
Chromosome5 (Build37)
Map Location 106,347,236 - 106,488,695
singlet/doubletdoublet
Overlap geneLOC626723
Upstream geneAbcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326
Downstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046C20.bB6Ng01-046C20.g
ACCDH871418DH871419
length240174
definitionDH871418|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C20, 5' end.DH871419|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,488,456 - 106,488,695)(106,347,236 - 106,347,409)
sequence
agcacaggctcagcagtccctaatccatttccaggttcaggttattggaa
gggaaacagaaaaacagcaacttcagaatccctgtgtttagcccaaagct
ttcccaggtaaacataaccatgtcttagtagtagctctcagaacacagga
cacagatattctctctctctctctctctctctctctctctctctctctct
ccctctccctctccctctccctccctccccctccccctct
aacataacctttttagctcagccttaacagtgcactgttaaggcactgtt
aagtgggaaatagactcaggatggttttggtagatgccaggaaatccctc
cttaaataaaacatgttttaagttactgttgggctaagagcaggcagaaa
caaatgggggttggggggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_106488456_106488695
seq2: B6Ng01-046C20.b_49_288 (reverse)

seq1  AGAGGGAGAGGGAGAGGGATGGAGAGGGAGAGGGAGAGGGAGAGAGAGAG  50
      |||||| ||||| |||||| ||||||||||||||||||||||||||||||
seq2  AGAGGGGGAGGGGGAGGGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATCTGTGTCCTGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATCTGTGTCCTGTGTTC  100

seq1  TGAGAGCTACTACTAAGACATGGTTATGTTTACCTGGGAAAGCTTTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCTACTACTAAGACATGGTTATGTTTACCTGGGAAAGCTTTGGGC  150

seq1  TAAACACAGGGATTCTGAAGTTGCTGTTTTTCTGTTTCCCTTCCAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGGGATTCTGAAGTTGCTGTTTTTCTGTTTCCCTTCCAATAAC  200

seq1  CTGAACCTGGAAATGGATTAGGGACTGCTGAGCCTGTGCT  240
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTGGAAATGGATTAGGGACTGCTGAGCCTGTGCT  240

seq1: chr5_106347236_106347409
seq2: B6Ng01-046C20.g_70_243

seq1  AACATAACCTTTTTAGCTCAGCCTTAACAGTGCACTGTTAAGGCACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACCTTTTTAGCTCAGCCTTAACAGTGCACTGTTAAGGCACTGTT  50

seq1  AAGTGGGAAATAGACTCAGGATGGTTTTGGTAGATGCCAGGAAATCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAAATAGACTCAGGATGGTTTTGGTAGATGCCAGGAAATCCCTC  100

seq1  CTTAAATAAAACATGTTTTAAGTTACTGTTGGGCTAAGAGCAGGCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAAAACATGTTTTAAGTTACTGTTGGGCTAAGAGCAGGCAGAAA  150

seq1  CAAATGGGGGTTGGGGGGGGAGGA  174
      ||||||||||||||||||||||||
seq2  CAAATGGGGGTTGGGGGGGGAGGA  174