BAC Information

Click to search

BAC

Clone NameB6Ng01-046D07
Chromosome5 (Build37)
Map Location 19,908,782 - 20,005,884
singlet/doubletdoublet
Overlap geneMagi2
Upstream genenone
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046D07.bB6Ng01-046D07.g
ACCDH871438DH871439
length1,148283
definitionDH871438|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D07, 5' end.DH871439|Mus musculus domesticus DNA, BAC clone: B6Ng01-046D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,908,782 - 19,909,953)(20,005,602 - 20,005,884)
sequence
gaattctcttggcccccactagcagctaaaacagaaagcaggtagagcag
caattcagccctagagcataactctgaacaatgctgcgcgttataacccc
aagagttctatactaccgtagcctttctgagtataacatttagcgtttta
aaatatctaaaagcttatattttttaatttaacaaaacatagcccggata
ttttagagttaacattatcttttcatatttatttcttggaggagttggtt
gactgtggtgtattagtgaaagatgttcaatttaagctagacaagcttga
agtgacaatattatcctaaaacatttaactgtttttcccatttagtttct
ttaggtctgcgttcagaatcgccagttctttgtttttttttttaataaat
taaatgatgcaaattggagcaaacatgctaaatatatctttacagacagt
gtcaaattaattcaagtcttgctaccctctcctggactggtggacctgag
actttcatacactgggagactgttcttcatagaacagataattcacctcc
cctccagctgaactgaaagctctctgccctcctcataattatgagagccc
ccaggcagggacaatgtcttatttaaatcaattaaatcttcaaagattag
ttcaccaagcaagtgtataaggccaaattcaatgtgttggttgaacaaat
aaatgagtctatctgtgcaaatctgattttctaagaaaggccatggaagc
agaagcttgactgtaataatcagacattgctattcatggacctttaacgt
gctgttgtttaagtttttcttattgtcgtttacacaaacatctcaacaga
tgagtttttcatttaaagcacttggaagtgatgtgagatatgtagatgaa
agccatagtaacaaggaagtcttgcaaaaaatgagcaattccgaattttt
ggggtgattaatctgtgataggatctgggaccatcctatatcacctttga
atctagaagaaaatactccactgtgagcatttcacaggtgctgcttcttt
gagtgtttaggtggtctagagtttaactatggtggagattgctaaatgta
gctactgctgaaatagaaaagtaggacattcccctccttagcatgtac
ttggtttctttgttttattggatgtatgtttgttttgattctttttagag
agagaggaaagagagagaacaaaattgagtgagagaaataatatgatcaa
attatattatgtgaaaaattaagaaatcaggcttaacaggttacacttaa
atatttgtacacatacatacacacatacatgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtaacaataagagaggaaaaaggatcgtggacttgagagt
tgtgggggacatggaaagggtggaggaatggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19908782_19909953
seq2: B6Ng01-046D07.b_44_1191

seq1  GAATTCTCTTGGCCCCCACTAGCAGCTAAAACAGAAAGCAGGTAGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGGCCCCCACTAGCAGCTAAAACAGAAAGCAGGTAGAGCAG  50

seq1  CAATTCAGCCCTAGAGCATAACTCTGAACAATGCTGCGCGTTATAACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGCCCTAGAGCATAACTCTGAACAATGCTGCGCGTTATAACCCC  100

seq1  AAGAGTTCTATACTACCGTAGCCTTTCTGAGTATAACATTTAGCGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCTATACTACCGTAGCCTTTCTGAGTATAACATTTAGCGTTTTA  150

seq1  AAATATCTAAAAGCTTATATTTTTTAATTTAACAAAACATAGCCCGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAAAAGCTTATATTTTTTAATTTAACAAAACATAGCCCGGATA  200

seq1  TTTTAGAGTTAACATTATCTTTTCATATTTATTTCTTGGAGGAGTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGTTAACATTATCTTTTCATATTTATTTCTTGGAGGAGTTGGTT  250

seq1  GACTGTGGTGTATTAGTGAAAGATGTTCAATTTAAGCTAGACAAGCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGTGTATTAGTGAAAGATGTTCAATTTAAGCTAGACAAGCTTGA  300

seq1  AGTGACAATATTATCCTAAAACATTTAACTGTTTTTCCCATTTAGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAATATTATCCTAAAACATTTAACTGTTTTTCCCATTTAGTTTCT  350

seq1  TTAGGTCTGCGTTCAGAATCGCCAGTTCTTTGTTTTTTTTTTTAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTGCGTTCAGAATCGCCAGTTCTTTGTTTTTTTTTTTAATAAAT  400

seq1  TAAATGATGCAAATTGGAGCAAACATGCTAAATATATCTTTACAGACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATGCAAATTGGAGCAAACATGCTAAATATATCTTTACAGACAGT  450

seq1  GTCAAATTAATTCAAGTCTTGCTACCCTCTCCTGGACTGGTGGACCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTAATTCAAGTCTTGCTACCCTCTCCTGGACTGGTGGACCTGAG  500

seq1  ACTTTCATACACTGGGAGACTGTTCTTCATAGAACAGATAATTCACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATACACTGGGAGACTGTTCTTCATAGAACAGATAATTCACCTCC  550

seq1  CCTCCAGCTGAACTGAAAGCTCTCTGCCCTCCTCATAATTATGAGAGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCTGAACTGAAAGCTCTCTGCCCTCCTCATAATTATGAGAGCCC  600

seq1  CCAGGCAGGGACAATGTCTTATTTAAATCAATTAAATCTTCAAAGATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGGACAATGTCTTATTTAAATCAATTAAATCTTCAAAGATTAG  650

seq1  TTCACCAAGCAAGTGTATAAGGCCAAATTCAATGTGTTGGTTGAACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAAGCAAGTGTATAAGGCCAAATTCAATGTGTTGGTTGAACAAAT  700

seq1  AAATGAGTCTATCTGTGCAAATCTGATTTTCTAAGAAAGGCCATGGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTCTATCTGTGCAAATCTGATTTTCTAAGAAAGGCCATGGAAGC  750

seq1  AGAAGCTTGACTGTAATAATCAGACATTGCTATTCATGGACCTTTAACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTGACTGTAATAATCAGACATTGCTATTCATGGACCTTTAACGT  800

seq1  GCTGTTGTTTAAGTTTTTCTTATTGTCGTTTACACAAACATCTCAACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTTTAAGTTTTTCTTATTGTCGTTTACACAAACATCTCAACAGA  850

seq1  TGAGTTTTTCATTTAAAGCACTTGGAAGTGATGTGAGATATGTAGATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTTCATTTAAAGCACTTGGAAGTGATGTGAGATATGTAGATGAA  900

seq1  AGCCATAGTAACAAGGAAGTCTTGCAAAAAAATGAGCAAATTCGAATTTC  950
      ||||||||||||||||||||||||| ||||||||||||| | ||||||| 
seq2  AGCCATAGTAACAAGGAAGTCTTGC-AAAAAATGAGCAATTCCGAATTTT  949

seq1  TGGGGTTGATTAATCTGTGATAGGATCTGGGACCATCCTATATTCAACCT  1000
      ||||| |||||||||||||||||||||||||||||||||||||   ||||
seq2  TGGGG-TGATTAATCTGTGATAGGATCTGGGACCATCCTATAT--CACCT  996

seq1  TTGAATCCTAGAAGAAAAATAACTCCACTGTGAGCATTTCAACAGGTGCT  1050
      |||||| |||||||||||   ||||||||||||||||||| |||||||| 
seq2  TTGAAT-CTAGAAGAAAA--TACTCCACTGTGAGCATTTC-ACAGGTGC-  1041

seq1  TGCTTCTTTGAGTGTTTTAGGTGGTACTAAGAAGTTTAAAACTATGGTGG  1100
      |||||||||||||| |||||||||| |||   |||||  |||||||||||
seq2  TGCTTCTTTGAGTG-TTTAGGTGGT-CTA--GAGTTT--AACTATGGTGG  1085

seq1  AGGATTTGCTAAATGTAGTCTACTGGCTGGATAATAGAAAAGTAGGGACA  1150
      ||   ||||||||||||| ||||| ||||   |||||||||||| |||||
seq2  AG--ATTGCTAAATGTAG-CTACT-GCTG--AAATAGAAAAGTA-GGACA  1128

seq1  TTCCCCTCTCTTATGCATGTAC  1172
      |||||||| |||| ||||||||
seq2  TTCCCCTC-CTTA-GCATGTAC  1148

seq1: chr5_20005602_20005884
seq2: B6Ng01-046D07.g_74_356 (reverse)

seq1  TGCCATTCCTCCACCCTTTCCATGTCCCCCACAACTCTCAAGTCGATGAT  50
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  TGCCATTCCTCCACCCTTTCCATGTCCCCCACAACTCTCAAGTCCACGAT  50

seq1  CTTTTTTCCTTTATTATTGTTACACACACACACACACACACACACACACA  100
      | |||||||| | |||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCCTCTCTTATTGTTACACACACACACACACACACACACACACA  100

seq1  CACATGTATGTGTGTATGTATGTGTACAAATATTTAAGTGTAACCTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTATGTGTGTATGTATGTGTACAAATATTTAAGTGTAACCTGTTA  150

seq1  AGCCTGATTTCTTAATTTTTCACATAATATAATTTGATCATATTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATTTCTTAATTTTTCACATAATATAATTTGATCATATTATTTCT  200

seq1  CTCACTCAATTTTGTTCTCTCTCTTTCCTCTCTCTCTAAAAAGAATCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAATTTTGTTCTCTCTCTTTCCTCTCTCTCTAAAAAGAATCAAA  250

seq1  ACAAACATACATCCAATAAAACAAAGAAACCAA  283
      |||||||||||||||||||||||||||||||||
seq2  ACAAACATACATCCAATAAAACAAAGAAACCAA  283