BAC Information

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BAC

Clone NameB6Ng01-046H10
Chromosome5 (Build37)
Map Location 14,994,291 - 14,995,246
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046H10.bB6Ng01-046H10.g
ACCDH871622DH871623
length9791,136
definitionDH871622|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H10, 5' end.DH871623|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgttaaagaattggcatcacctgactggcccatgaacctttg
tggggcattttcttaattgatatgataagccaaggcatagctcaacctgg
gcacttacatcctgtgtggctgggcctggataaaatcaaaaaaacaaaac
aaaaacataaaaaacaaaaaacaaaaaattatctgagtactatccaatta
agtggaacctctcttgggtttctttttcagttcctgccacataaattctt
tcctgagccaatatgctttgggtcagtgtcttagcagaacaagagagaca
aagggcatcacaaggaaatctcagctccatgaaaacacacctaaggtcac
taagcctcagcatctgctcttcccagttaagctgccttgaataaagcttt
cttactcctctcttttagtcgtcagtctgtgctggagttttagtcatagc
atcatgataacaaccttacagagaaagagaattttgaaattatttctatt
ttgttctgctggtttggtttggtttggtttgagacaatgtctcacactat
aacctaagctggagctcattgtacagctaaagccgacctcaaactgacag
caatcttcacaccacagcctcctgactgcttgattataggtgtgaatcca
tacctggtgatcaatctgtttcatactatttgattctgttttatccattc
tttccctgtctataaaattcaactcctgctcatgccataagaagactgat
cttgctttatagaaaagccttacccaactcaaaagtgtaaaatgaaacca
actaagatctttaaactgaactagctataattatctgtttatccttggta
aatagcgaaggggatcactctgcttgttgatgtttttctaatgtgtcacg
ctactgtaaagggcatagagcagactcctgcagactacaaactgtggtga
aatgccaccaaggcatcatctctgcactg

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaacgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaatactcctccaatgttgctg
ggattgcaggcttgtacaaccactctggaaatcagtatggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaatgctgacaccattgcatacactagcaagatttatcgaaagga
ccagatgtagctgtctctgtgagactatgccagggcctagcaacacagag
tgatgctcacagtcagctaatgatgatcatagctcccatgagagctagag
atgtactcaggagctaagatctgcacccttaagtgaacacttatgactac
cagtacctgagcctctgactctagctgcattagtatcaaagatggctagc
gccatactggaagagccatggacctgcactatatgctcagtacagggatg
ctcgggccataaggagagtgtgggtgcatgaagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14994291_14995246
seq2: B6Ng01-046H10.b_93_1022

seq1  GTGGGCCATTTTCTTAATTGATGTGATAAGTCAAGGCATAGCTCAACCTG  50
      ||||| |||||||||||||||| ||||||| |||||||||||||||||||
seq2  GTGGGGCATTTTCTTAATTGATATGATAAGCCAAGGCATAGCTCAACCTG  50

seq1  GGCACTTACATCTTGGGTGGCTGGGCCTGAATAAAAAATAAAAAACAAAA  100
      |||||||||||| || ||||||||||||| ||||||   |||||||||||
seq2  GGCACTTACATCCTGTGTGGCTGGGCCTGGATAAAATCAAAAAAACAAAA  100

seq1  CAAAAACAAAGAAAACAAAAAACAAAAAATTATCTGAGAACTATCCAACT  150
      |||||||| | ||||||||||||||||||||||||||| ||||||||| |
seq2  CAAAAACATAAAAAACAAAAAACAAAAAATTATCTGAGTACTATCCAATT  150

seq1  AAGAGGAACCTCTCGCGGGTCTCTTTTTCAGTTCCTGCCACATAAATTCT  200
      ||| ||||||||||  |||| |||||||||||||||||||||||||||||
seq2  AAGTGGAACCTCTCTTGGGTTTCTTTTTCAGTTCCTGCCACATAAATTCT  200

seq1  TTCCTGTGCCAATATGCTTTGGGTCAGTGTCTTAGCAGAACAAGAGAGAC  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGCCAATATGCTTTGGGTCAGTGTCTTAGCAGAACAAGAGAGAC  250

seq1  AGAGGGCATCACTAAGAAATCTCAGCTCCATGAAAACACACCTAAGGTCA  300
      | |||||||||| | |||||||||||||||||||||||||||||||||||
seq2  AAAGGGCATCACAAGGAAATCTCAGCTCCATGAAAACACACCTAAGGTCA  300

seq1  CTAAGCCTCAGCATCTGCTCTTCCCAGTTAAGCTGCCTTGAATAAAACTT  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAAGCCTCAGCATCTGCTCTTCCCAGTTAAGCTGCCTTGAATAAAGCTT  350

seq1  TCTTACTCCTCTCCTTTAGTCGTCAGAATGCGCTGGAGTTTTAGTCATAG  400
      ||||||||||||| ||||||||||||  || |||||||||||||||||||
seq2  TCTTACTCCTCTCTTTTAGTCGTCAGTCTGTGCTGGAGTTTTAGTCATAG  400

seq1  CATCATGATAACAACCTTACAGAGAAAGAGAATTTTGAAATTATTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGATAACAACCTTACAGAGAAAGAGAATTTTGAAATTATTTCTAT  450

seq1  TTTGTTCTGC-----TGGTTTCGTTTGGTTTGAGACAATGTCTCACACTA  495
      ||||||||||     |||||| ||||||||||||||||||||||||||||
seq2  TTTGTTCTGCTGGTTTGGTTTGGTTTGGTTTGAGACAATGTCTCACACTA  500

seq1  TAACCTAAGCTGGAGCTCATTGTACAGCTAAAGCCGACCTCAAACTGACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAAGCTGGAGCTCATTGTACAGCTAAAGCCGACCTCAAACTGACA  550

seq1  GCAATCTTCACACCACAGCCTCCCAACTGCTTAGATTATAGGTGTGAATC  595
      |||||||||||||||||||||||  ||||||| |||||||||||||||||
seq2  GCAATCTTCACACCACAGCCTCCTGACTGCTT-GATTATAGGTGTGAATC  599

seq1  CATACCTGGTGATCAATCTGTTTCATACTATTTGATTCTGTTTTATCCAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGGTGATCAATCTGTTTCATACTATTTGATTCTGTTTTATCCAT  649

seq1  TCTTTCACTATCTATAAAATTCAACTCCTGCTCATGCCATAAGAAGACTG  695
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCTGTCTATAAAATTCAACTCCTGCTCATGCCATAAGAAGACTG  699

seq1  ATCTTGCTTTATAGAAAAGCCTTACCCAACTCAAAAGTGTAAAATGAAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTTTATAGAAAAGCCTTACCCAACTCAAAAGTGTAAAATGAAAC  749

seq1  CAACTAAGATCTTTAAACTGAACTAGCTATAATTATCTGTTTTTATCCTT  795
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  CAACTAAGATCTTTAAACTGAACTAGCTATAATTATCTG--TTTATCCTT  797

seq1  GCTAAATAAACAAAGGGGATCACTCTGCTTTGTTTGAATGTTTTTTTCTT  845
      | ||||| | | ||||||||||||||||||   ||||   | ||||||| 
seq2  GGTAAAT-AGCGAAGGGGATCACTCTGCTT--GTTGA---TGTTTTTCT-  840

seq1  AAATGTTGTCACGCTTAACTGTAAAGGGGCCATAAGAAGCAAGACTCCCT  895
       |||| |||||||||  |||||||||||  ||||   ||| ||||| |||
seq2  -AATG-TGTCACGCT--ACTGTAAAGGG--CATA--GAGC-AGACT-CCT  880

seq1  GCAGGAACTACCAAACTGTGAGTGAAAATGGCCCACCCAAAGGGCATCAT  945
      ||||  |||| ||||||||| ||| |||||  |||||   | ||||||||
seq2  GCAG--ACTA-CAAACTGTG-GTG-AAATG--CCACC---AAGGCATCAT  920

seq1  CTCTGGCACTG  956
      |||| ||||||
seq2  CTCT-GCACTG  930


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