BAC Information

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BAC

Clone NameB6Ng01-046H19
Chromosome5 (Build37)
Map Location 29,725,185 - 29,824,668
singlet/doubletdoublet
Overlap geneEG620572, Gm1040, Hlxb9
Upstream genePrr8, Shh, LOC100039258, Rnf32, EG664949, Lmbr1
Downstream geneLOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046H19.bB6Ng01-046H19.g
ACCDH871636DH871637
length1,1141,022
definitionDH871636|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H19, 5' end.DH871637|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,823,527 - 29,824,668)(29,725,185 - 29,726,239)
sequence
gaattccttgtaaaattttaccaagagaattcagaggtcataaaaagtag
ggtctcgataggaaccagaatgaacatctggtttattctgtggcctaagg
ggtgctcaacacataaagttcacccttgagaactttaccaagcactcgac
tgcatgtgcaacacacacacacacacacacacacacacacacacacacac
acacgcacacacacacacacgcacgcacatacgcacacacatgtgcacct
gcctcacctcctgatgttttacacatgcttacaattttgtgttagacagc
atttgtaggtattttgggctgcaagttggacacacctctatagcaaccag
acaaccaatcatcaaacagtccacaaagagccactaggttgtatgccaag
tcctcagttctgtacaccttgtagaattttgaatcctagaacctaaaggc
caaacaccaaagagcagtcagctgtgtgttcaagacagccaccttcgtca
gattgctggagaacccccggactcttggttttccaagacccagcagctct
ggtttaaaagcaaggtcaagctggcttgatttaggatatcattagctgtt
tatacagtaccaaagcagcccatgacgtatgaaagatgactttccaatct
cagggaataaatcaggtcctgcaagtgattccacttaatacttcgcttta
gccagtaaaatattacacctgctattactcagggcaaacacagccccttc
catttgtttattgaggaaaccatttatttgaggacatttaattgcaatag
tgaagcctggcttgggggttaatcccagtttatcgatgcaattaaaagca
gtgtgtgctgtgtctcatatttattatctagagtagatgtgacacacccg
gtgtcgagatgggtgtgcttgagatatctcgctgtgtgaggtgtaggtag
gttgctgtcacacacagtgctgctcagctctgtgtcagcgtttgcaaatc
tattggggtagactctatttgatttacttggagcagattgagtcaaatgt
tatatagatccagggctgttgggttctgtcatgatcaggatttaatgcgg
ggggcaacctctct
gaattccttccctctaaatccttgatgttgcagccttgagcacagttatc
tgcagggtgttttcattttctgtgggggacctgcacacaggctgctgaga
gctagctacagcaggacccaactgcactggttttacaacctttcaggctg
tgaacccaccccatgatgtcttcatggttatgagcacaaaagccctgaga
ccagctttgagtcttctactgaactggatttctgaatcactgaagctaag
tgtggggccagatcctgaaaaagctcatgaatgtggctatgtaggggtct
aaggagggtccatacaaaacccgagttgtggctgtgtgagagtctaagga
ggttccatacaaaggagtattagctcttccaatagagaagcaggcagccc
tgagaaagcattgggcttcaggagagctcaaccagaaaggtagactggaa
ggaagccaggggaaagacagactcctcacttgggtaatttcgggacacca
cctctgtctagcacagagcctgctgctgttcaaggaccacattgggccct
gacctgacctgctcctctagtttgaaggtgtattgtcacactctaggtgg
ctctgtttgtatttgcatctggaggtaatacggcagatgaaactgtacac
aaaagtagtttaggaaaaatctagaatattccaaccacttagactgtcat
ggaaaagagaaaagagcagtgtcaacaccaacatcacacttagatcatat
ttcaaatgtcatctgcatgtgattgcgagatgcatataactgaggaatta
ttataattctaccataatttactactttaccaaataactagtaaataaat
aaatactgctgtacatgcccagtgactatatgacccaacgaataaatata
aagagagatgtcagatagctagatagtgataggtctcagtcctgttcata
tataattatgaatcatgtgttttagctccagaatcctccgtaaagtttgt
aaaatataccaagaatgaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_29823527_29824668
seq2: B6Ng01-046H19.b_44_1157 (reverse)

seq1  AGAGAGGGTTTGCCCACCCGCATTAAAATCCCATGAATCATTGACAAGAA  50
      |||||||  |||||| |||||||| ||||||  || |||| |||||   |
seq2  AGAGAGG--TTGCCC-CCCGCATT-AAATCC--TG-ATCA-TGACA--GA  40

seq1  ACCAAACAGCACTGGATCTATATAACAATTTGAACTCATACTGCTCCAAG  100
      ||| |||||| ||||||||||||||| ||||| |||||  ||||||||||
seq2  ACCCAACAGCCCTGGATCTATATAAC-ATTTG-ACTCAATCTGCTCCAAG  88

seq1  TAAAATCAAATTAGAAGTCTTACCCCAATTAGATTATGCAAACGCTGACA  150
      | |||||||| ||| |||| |||||||| |||||| ||||||||||||||
seq2  T-AAATCAAA-TAG-AGTC-TACCCCAA-TAGATT-TGCAAACGCTGACA  132

seq1  CAGAGCTGAGCAGCACTTGGTGTGTGACAGCAACCCTACCTTACACCTCA  200
      |||||||||||||||||  |||||||||||||| |||||| |||||||||
seq2  CAGAGCTGAGCAGCACT--GTGTGTGACAGCAA-CCTACC-TACACCTCA  178

seq1  CACAGCGAGGATATTCTCAAGCACACCCATCTCGACACCGGGTTGTGTCA  250
      |||||||| |||| |||||||||||||||||||||||||||| |||||| 
seq2  CACAGCGA-GATA-TCTCAAGCACACCCATCTCGACACCGGG-TGTGTC-  224

seq1  ACATTCTACCTCTAGATAATAAATATGAGACACAGCACACACTGCTTTTA  300
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACA-TCTA-CTCTAGATAATAAATATGAGACACAGCACACACTGCTTTTA  272

seq1  ATTGCATCGATAAACTGGGATTAACCCCCAAGCCAGGCTTCACTATTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCGATAAACTGGGATTAACCCCCAAGCCAGGCTTCACTATTGCA  322

seq1  ATTAAATGTCCTCAAATAAATGGTTTCCTCAATAAACAAATGGAAGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTCCTCAAATAAATGGTTTCCTCAATAAACAAATGGAAGGGGC  372

seq1  TGTGTTTGCCCTGAGTAATAGCAGGTGTAATATTTTACTGGCTAAAGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGCCCTGAGTAATAGCAGGTGTAATATTTTACTGGCTAAAGCGA  422

seq1  AGTATTAAGTGGAATCACTTGCAGGACCTGATTTATTCCCTGAGATTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAGTGGAATCACTTGCAGGACCTGATTTATTCCCTGAGATTGGA  472

seq1  AAGTCATCTTTCATACGTCATGGGCTGCTTTGGTACTGTATAAACAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTTTCATACGTCATGGGCTGCTTTGGTACTGTATAAACAGCTA  522

seq1  ATGATATCCTAAATCAAGCCAGCTTGACCTTGCTTTTAAACCAGAGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCCTAAATCAAGCCAGCTTGACCTTGCTTTTAAACCAGAGCTGC  572

seq1  TGGGTCTTGGAAAACCAAGAGTCCGGGGGTTCTCCAGCAATCTGACGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTGGAAAACCAAGAGTCCGGGGGTTCTCCAGCAATCTGACGAAG  622

seq1  GTGGCTGTCTTGAACACACAGCTGACTGCTCTTTGGTGTTTGGCCTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTCTTGAACACACAGCTGACTGCTCTTTGGTGTTTGGCCTTTAG  672

seq1  GTTCTAGGATTCAAAATTCTACAAGGTGTACAGAACTGAGGACTTGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGATTCAAAATTCTACAAGGTGTACAGAACTGAGGACTTGGCAT  722

seq1  ACAACCTAGTGGCTCTTTGTGGACTGTTTGATGATTGGTTGTCTGGTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTAGTGGCTCTTTGTGGACTGTTTGATGATTGGTTGTCTGGTTGC  772

seq1  TATAGAGGTGTGTCCAACTTGCAGCCCAAAATACCTACAAATGCTGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGTGTGTCCAACTTGCAGCCCAAAATACCTACAAATGCTGTCTA  822

seq1  ACACAAAATTGTAAGCATGTGTAAAACATCAGGAGGTGAGGCAGGTGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATTGTAAGCATGTGTAAAACATCAGGAGGTGAGGCAGGTGCAC  872

seq1  ATGTGTGTGCGTATGTGCGTGCGTGTGTGTGTGTGTGCGTGTGTGTGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGCGTATGTGCGTGCGTGTGTGTGTGTGTGCGTGTGTGTGTGT  922

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCACATGCAGTCGAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCACATGCAGTCGAGTG  972

seq1  CTTGGTAAAGTTCTCAAGGGTGAACTTTATGTGTTGAGCACCCCTTAGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAAAGTTCTCAAGGGTGAACTTTATGTGTTGAGCACCCCTTAGGC  1022

seq1  CACAGAATAAACCAGATGTTCATTCTGGTTCCTATCGAGACCCTACTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATAAACCAGATGTTCATTCTGGTTCCTATCGAGACCCTACTTTT  1072

seq1  TATGACCTCTGAATTCTCTTGGTAAAATTTTACAAGGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTCTGAATTCTCTTGGTAAAATTTTACAAGGAATTC  1114

seq1: chr5_29725185_29726239
seq2: B6Ng01-046H19.g_66_1087

seq1  GAATTCCTTCCCTCTAAATCCTTGATGTTGCAGCCTTGAGCACAGTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCTCTAAATCCTTGATGTTGCAGCCTTGAGCACAGTTATC  50

seq1  TGCAGGGTGTTTTCATTTTCTGTGGGGGACCTGCACACAGGCTGCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGTGTTTTCATTTTCTGTGGGGGACCTGCACACAGGCTGCTGAGA  100

seq1  GCTAGCTACAGCAGGACCCAACTGCACTGGTTTTACAACCTTTCAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTACAGCAGGACCCAACTGCACTGGTTTTACAACCTTTCAGGCTG  150

seq1  TGAACCCACCCCATGATGTCTTCATGGTTATGAGCACAAAAGCCCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCACCCCATGATGTCTTCATGGTTATGAGCACAAAAGCCCTGAGA  200

seq1  CCAGCTTTGAGTCTTCTACTGAACTGGATTTCTGAATCACTGAAGCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTGAGTCTTCTACTGAACTGGATTTCTGAATCACTGAAGCTAAG  250

seq1  TGTGGGGCCAGATCCTGAAAAAGCTCATGAATGTGGCTATGTAGGGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCCAGATCCTGAAAAAGCTCATGAATGTGGCTATGTAGGGGTCT  300

seq1  AAGGAGGGTCCATACAAAACCCGAGTTGTGGCTGTGTGAGAGTCTAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGTCCATACAAAACCCGAGTTGTGGCTGTGTGAGAGTCTAAGGA  350

seq1  GGTTCCATACAAAGGAGTATTAGCTCTTCCAATAGAGAAGCAGGCAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATACAAAGGAGTATTAGCTCTTCCAATAGAGAAGCAGGCAGCCC  400

seq1  TGAGAAAGCATTGGGCTTCAGGAGAGCTCAACCAGAAAGGTAGACTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGCATTGGGCTTCAGGAGAGCTCAACCAGAAAGGTAGACTGGAA  450

seq1  GGAAGCCAGGGGAAAGACAGACTCCTCACTTGGGTAATTTCGGGACACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGGGGAAAGACAGACTCCTCACTTGGGTAATTTCGGGACACCA  500

seq1  CCTCTGTCTAGCACAGAGCCTGCTGCTGTTCAAGGACCACATTGGGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTAGCACAGAGCCTGCTGCTGTTCAAGGACCACATTGGGCCCT  550

seq1  GACCTGACCTGCTCCTCTAGTTTGAAGGTGTATTGTCACACTCTAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGACCTGCTCCTCTAGTTTGAAGGTGTATTGTCACACTCTAGGTGG  600

seq1  CTCTGTTTGTATTTGCATCTGGAGGTAATACGGCAGATGAAACTGTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTGTATTTGCATCTGGAGGTAATACGGCAGATGAAACTGTACAC  650

seq1  AAAAGTAGTTTAGGAAAAATCTAGAATATTCCAACCACTTAGACTGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGTTTAGGAAAAATCTAGAATATTCCAACCACTTAGACTGTCAT  700

seq1  GGAAAAGAGAAAAGAGCAGTGTCAACACCAACATCACACTTAGATCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGAAAAGAGCAGTGTCAACACCAACATCACACTTAGATCATAT  750

seq1  TTCAAAATGTCATCTGCATGTGATTGCGAGATGCATATTAACTGAGGAAT  800
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTC-AAATGTCATCTGCATGTGATTGCGAGATGCATA-TAACTGAGGAAT  798

seq1  TATTATAATTCTACCATAATTTACTACTTTACCAAAATAAACTAGTAAAA  850
      ||||||||||||||||||||||||||||||||||||   ||||||| |||
seq2  TATTATAATTCTACCATAATTTACTACTTTACCAAA--TAACTAGT-AAA  845

seq1  TAAATAAATACTGCTGTACATGCCCAGTTGACTAATATGACCCAAACGAA  900
      ||||||||||||||||||||||||||| ||||| ||||||||| ||||||
seq2  TAAATAAATACTGCTGTACATGCCCAG-TGACT-ATATGACCC-AACGAA  892

seq1  ATAAAATATTAAAGGAGGAGATGTCAAGATTAAGCTAGATTAGTGATAGG  950
         ||||| |||||   |||||||| ||||  ||||||| |||||||| |
seq2  --TAAATA-TAAAG--AGAGATGTC-AGAT--AGCTAGA-TAGTGATA-G  932

seq1  GTCTCAGGGTCCTGTTTCAATATAATTAAATATATGATTTAATGTGTTTT  1000
      ||||||  ||||||||   |||||||      |||||  | ||||| |||
seq2  GTCTCA--GTCCTGTTCATATATAAT------TATGA-ATCATGTG-TTT  972

seq1  TAGCT-CAGAATCAT-CGTAAAAAGGTTTTGTAAAATAATAACATAGAAA  1048
      ||||| ||||||| | ||||||     |||||||||| ||| || || ||
seq2  TAGCTCCAGAATCCTCCGTAAA----GTTTGTAAAAT-ATACCA-AG-AA  1015

seq1  TGAAGAC  1055
      |||||||
seq2  TGAAGAC  1022