BAC Information

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BAC

Clone NameB6Ng01-046I08
Chromosome5 (Build37)8 (Build37)
Map Location 123,938,405 - 123,939,454113,728,059 - 113,728,532
singlet/doubletsingletsinglet
Overlap geneLrrc43
Upstream geneAtp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31
Downstream geneB3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046I08.bB6Ng01-046I08.g
ACCDH871656DH871657
length1,044184
definitionDH871656|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I08, 5' end.DH871657|Mus musculus domesticus DNA, BAC clone: B6Ng01-046I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,938,405 - 123,939,454)(113,728,059 - 113,728,532)
sequence
cgcagacacaacttccgcaggtgctcacacacagccgtgctcaaggtccc
cggtacaccctcgccctcgccctcggtctgtctgtagtcgctagtgctgg
actcgctggtctccatgctgtgcgaggacagctcgttgctaggcaacggc
cagacgcgttaccctgggtgcgtggaagccaacttcctcagtatcagaga
cccccagctaagctcctacccaggctggctgaggtaccttgcaaaaacaa
gtggtggacgcctcttagaataatcttgattgtctgtacaaagtgctgac
tgctgttcccatttggcagatctaaagaaaaattagtccaatgttaagca
ttttaagactccaattagggaatcatccaatcttatcttgccatcccttg
tagctccgccacacagcaggggtccccacctgtggtctgtgaaattaatg
ggagatgactcttaactggaaatgtaacaagatgtatgattttgggtacc
ataagactcactcattccaaggcacaaatctgtgattttttttttttttt
ttttttttttggtgtatctctacagtgcaattgtaatctggggtttacca
gtgatctaatcactttccctcaacttaaaaaccaggaagcaaagcccagt
ggagtagcgcacacttttaatcccagcacttaggaagcagaggcaggcag
atctctgagttccagatcagcctgggtctacagaagtgagtttcaagaca
gccaggggctatgcacagaaaacacctgttttgggggaaaaacaaagcaa
aacaccaaagcaaacaccactgtatcatctgcttatcccatgacaaacag
tgatgcactttgtacacctatgcatttaacttccttccgggggtaggaaa
gatctggttctttacatcttctcactaatgaatccatcccaagctggtct
cagactccctagatagccatgaggacctggatctgacctctgctctgctc
tgactgctggctcagcatgtgcacaggcctggctcatgctgttt
taggctagcctgcgctatgagaataaaacagcagggcagtggtgtcacac
gcctttaatcccagcacttgggaggcaaaggcaggtggatttctgagttc
gaggccaacctggtctacagaatgagttccaggacagccagagctacaga
actacacagagaaaccctgtttgggggggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123938405_123939454
seq2: B6Ng01-046I08.b_54_1097 (reverse)

seq1  AAACAGGCATGAAGCCAGGCCTGGTGGCACATGCTTGGAGCCCCAGCAGT  50
      ||||| ||||| |||||||||||   |||||||||  |||  ||||||||
seq2  AAACA-GCATG-AGCCAGGCCTG--TGCACATGCT--GAG--CCAGCAGT  42

seq1  CAGGAGGCAGAAGCAGAAGGGTCAGATCAAGGTCCTTCATGGCTATCTAG  100
      |||   |||| ||||||  ||||||||| |||||| ||||||||||||||
seq2  CAG--AGCAG-AGCAGA--GGTCAGATCCAGGTCC-TCATGGCTATCTAG  86

seq1  GGAGTCTGAGACCAGCCTGGGATGGCATCATAAGTGAGAAGATGTAAAGA  150
      |||||||||||||||| ||||||||  |||| ||||||||||||||||||
seq2  GGAGTCTGAGACCAGCTTGGGATGGATTCATTAGTGAGAAGATGTAAAGA  136

seq1  A-CAGATCTTTCCTACCCCCGG-AGGAAGTTAAATGCATAGGTGTACAAA  198
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACCAGATCTTTCCTACCCCCGGAAGGAAGTTAAATGCATAGGTGTACAAA  186

seq1  GTGCATCACTGTTTGTCATTGGATAAGCAGATGATACAGTGGTGTTTGCT  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGCATCACTGTTTGTCATGGGATAAGCAGATGATACAGTGGTGTTTGCT  236

seq1  TT-GTGTTTTGCTTTGTTTTTCCCCCAAAACA-GTG-TTTCTGTGCATAG  295
      || ||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  TTGGTGTTTTGCTTTGTTTTTCCCCCAAAACAGGTGTTTTCTGTGCATAG  286

seq1  -CCCTGGCTGTCCTGAAACTCAC-TCTGTAGA-CCAGGCTGATCTGGAAC  342
       ||||||||||| |||||||||| |||||||| |||||||||||||||||
seq2  CCCCTGGCTGTCTTGAAACTCACTTCTGTAGACCCAGGCTGATCTGGAAC  336

seq1  TCAGAGATCTGCCTGCCTCTGCTTCCTAAGTGCTGGGATTAAAAGTGTGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATCTGCCTGCCTCTGCTTCCTAAGTGCTGGGATTAAAAGTGTGC  386

seq1  GCTACTCCACTGGGCTTTGCTTCCTGGTTTTTAAGTTGAGGGAAAGTGAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCCACTGGGCTTTGCTTCCTGGTTTTTAAGTTGAGGGAAAGTGAT  436

seq1  TAGATCACTGGTAAACCCCAGATTACAATTGCACTGTAGAGATACACCAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCACTGGTAAACCCCAGATTACAATTGCACTGTAGAGATACACCAA  486

seq1  AAAAAAAAAAAAAAAAAAAAAAATCACAGATTTGTGCCTTGGAATGAGTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAATCACAGATTTGTGCCTTGGAATGAGTG  536

seq1  AGTCTTATGGTACCCAAAATCATACATCTTGTTACATTTCCAGTTAAGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATGGTACCCAAAATCATACATCTTGTTACATTTCCAGTTAAGAG  586

seq1  TCATCTCCCATTAATTTCACAGACCACAGGTGGGGACCCCTGCTGTGTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCCATTAATTTCACAGACCACAGGTGGGGACCCCTGCTGTGTGG  636

seq1  CGGAGCTACAAGGGATGGCAAGATAAGATTGGATGATTCCCTAATTGGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCTACAAGGGATGGCAAGATAAGATTGGATGATTCCCTAATTGGAG  686

seq1  TCTTAAAATGCTTAACATTGGACTAATTTTTCTTTAGATCTGCCAAATGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATGCTTAACATTGGACTAATTTTTCTTTAGATCTGCCAAATGG  736

seq1  GAACAGCAGTCAGCACTTTGTACAGACAATCAAGATTATTCTAAGAGGCG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGTCAGCACTTTGTACAGACAATCAAGATTATTCTAAGAGGCG  786

seq1  TCCACCACTTGTTTTTGCAAGGTACCTCAGCCAGCCTGGGTAGGAGCTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACTTGTTTTTGCAAGGTACCTCAGCCAGCCTGGGTAGGAGCTTA  836

seq1  GCTGGGGGTCTCTGATACTGAGGAAGTTGGCTTCCACGCACCCAGGGTAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGGTCTCTGATACTGAGGAAGTTGGCTTCCACGCACCCAGGGTAA  886

seq1  CGCGTCTGGCCGTTGCCTAGCAACGAGCTGTCCTCGCACAGCATGGAGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTCTGGCCGTTGCCTAGCAACGAGCTGTCCTCGCACAGCATGGAGAC  936

seq1  CAGCGAGTCCAGCACTAGCGACTACAGACAGACCGAGGGCGAGGGCGAGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAGTCCAGCACTAGCGACTACAGACAGACCGAGGGCGAGGGCGAGG  986

seq1  GTGTACCGGGGACCTTGAGCACGGCTGTGTGTGAGCACCTGCGGAAGTTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCGGGGACCTTGAGCACGGCTGTGTGTGAGCACCTGCGGAAGTTG  1036

seq1  TGTCTGCG  1050
      ||||||||
seq2  TGTCTGCG  1044

seq1: chr8_113728059_113728532
seq2: B6Ng01-046I08.g_103_253 (reverse)

seq1  CCCCCCCCCCCCAGGGTTTCTCTGTGTAGCTGCAAGTTCAAGATCAAGGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCCAGCTGATTTGGAAAATCTGAGTCCAAGACAGCCCTGGGAAAAACTTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGACTCTACCCGAAGAAAGGCAGAAGGGTCTAGAGAGGCATGGGCTCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCATGAGACTTCAGGGCCCAATCACCTCTTAAAGGTCCTGTCTCTTAAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGTTCTGATGGCAATTGACCATAGGCTCTGAGCTCCGGCCTTCAGCCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCCAGACGCTTCTGCATTTGCTATGTAGGCACTCTAGCACTGAGTTAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAATTGCTCTCCCCCGTGTGCCCTGGTTTTTCCAGACAGGGATTCTCT  350
              | |||||||                ||| |||||| ||||||
seq2  -------CCCCTCCCCC----------------CCAAACAGGGTTTCTCT  27

seq1  G--------TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC  392
      |        |||||| ||||||||||||||||||| ||||||||||||| 
seq2  GTGTAGTTCTGTAGCTCTGGCTGTCCTGGAACTCATTCTGTAGACCAGGT  77

seq1  TGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCATGTACTGGGAT  442
      ||||||||||||||||||||  ||||||| ||||||||| || |||||||
seq2  TGGCCTCGAACTCAGAAATCCACCTGCCTTTGCCTCCCAAGTGCTGGGAT  127

seq1  TAAAGGCGTGCGCCACCACTGCACCACTGCCC  474
      |||||||||| | ||||||||| |        
seq2  TAAAGGCGTGTGACACCACTGCCC--------  151