BAC Information

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BAC

Clone NameB6Ng01-046J14
Chromosome5 (Build37)
Map Location 147,952,253 - 148,086,044
singlet/doubletdoublet
Overlap geneGsh1, Pdx1
Upstream geneLOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3
Downstream geneCdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046J14.bB6Ng01-046J14.g
ACCDH871711DH871712
length1,084585
definitionDH871711|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J14, 5' end.DH871712|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,084,935 - 148,086,044)(147,952,253 - 147,952,837)
sequence
gaattccttctccagctccagcagctgcgcccgggtgtaggcagtacggg
tcctcttgttttcctcgggttccgctgtgtaagcacctcctgtgggtgat
acaatcggtcagtgaggttccccggggccccatgaagctcaaatatttta
ttcccaggccaggaacagccctcctactgatcgcagctgttgaatccagc
cgcagcccattgctccagagacccactgcggttccaccagagtcttccct
aagcaatggagcccttttctcaggccatagccatgccggttctcatctca
atatcacacttggaactggcaaccagtggtttcaaaattagttcatttaa
ttgatgttaaaatgcacataataaaaaaatgatcaactcctttctactta
aggatatgccttaaatgcaaaattttaaacaaacgttctgatgttgaccc
agttcagttcagtctgattactatctcatcctcataggtatatatatatc
caagaaacatttctagaataagcttttaccacaattaatgctaatttcct
ctttattccctgtttcattaaaacaatgctaagctcaacatgttaactta
ttttactggtggcgaggtctttaattctggttctctggaggcagaagcag
ggggaggcagccccggaggcgagcttggttgcctagctagctccaggtca
gcaacagcaacgtaaatgagtctcaaaaataattttaagtgaatgtaaca
actcactaatagatgcagactacagtttgaaaggctatggtgctctcttt
aagttatggacatattttgttatagcttttatttatttgttatatcatct
ttatgctttacgtctttattattgttgtgtgtagaatatgcttgtcagaa
cacggcagtgagcacagggaggtggggaacactttagggatttggttctc
tcttttattttagtctgtggatgattaaagccttaagcttgaaaggacgt
gtgattttttttttttcgttgggacattgtttgttgttcaatagtcactt
ctggcttgtaaattatttaataagtatatgaact
gaattctctccgaggaggattctctcaactgggggtcctggagacatagt
acctgaataattaatctaccctcccatgttttacactctttgggtgtgca
atttaaaacatatgaattgtttgtttctggaatattccatttaatacttt
tggactgcaactgatttcgggtaattgaggcagaaaaaaaagaaaaactt
tagtcagtggctccttaatgtaacaaacattctagttaaaaaagaggaaa
tgcggaggctggaagggtggctcagtggttaagagcaccggctgctcttc
cagaagacccaagttgagttcttagaacccacaaggtggcttataacact
ctgtggttccagctcaaggagatctgatgccatcttgatttccctgggta
ccaggtgtgagagtagacatgcatgtaggtaaagtacccatatatgtaaa
ataaaaagggaaattccacagagcacagtgatccatgcatctcaacgctc
agggccatgcattttaggtctgactgagcatcatagcaagattctatcat
aagagagagaaagaaagagaggggggagagggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148084935_148086044
seq2: B6Ng01-046J14.b_41_1124 (reverse)

seq1  AGTTCATTATAACTTTATTAAAAATAATATACAAGCCCAGGAAGATGACT  50
      |||||| ||||   |||||  ||||||| ||||||||   |||| |||||
seq2  AGTTCA-TATA--CTTATT--AAATAATTTACAAGCC--AGAAG-TGACT  42

seq1  ATTTGAAACAAACAAACAAATGTACCAAAACGAAAAAAAAAAAAAACCAA  100
      | |||||   ||||||| ||||| ||  ||||||||||||||||     |
seq2  A-TTGAA--CAACAAAC-AATGTCCC--AACGAAAAAAAAAAAA---TCA  83

seq1  CACGTTCCCTTTCAAGCTTTAGGGCTTTAATTCAATCCACAGAACCTAAA  150
      |||||  |||||||||| ||| |||||||||   |||||||||  |||||
seq2  CACGT--CCTTTCAAGC-TTAAGGCTTTAAT--CATCCACAGA--CTAAA  126

seq1  ATAAAAGGAGAGAACCAAATCCCTAAAGGTGTTCCCCACCTCCCTGTGCT  200
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAAAA-GAGAGAACCAAATCCCTAAA-GTGTTCCCCACCTCCCTGTGCT  174

seq1  CACTGCCGTGTTCTGACAAGCATATTCTACACACAACAATAATAAAGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCGTGTTCTGACAAGCATATTCTACACACAACAATAATAAAGACG  224

seq1  TAAAGCATAAAGATGATATAACAAATAAATAAAAGCTATAACAAAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATAAAGATGATATAACAAATAAATAAAAGCTATAACAAAATATG  274

seq1  TCCATAACTTAAAGAGAGCACCATAGCCTTTCAAACTGTAGTCTGCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACTTAAAGAGAGCACCATAGCCTTTCAAACTGTAGTCTGCATCT  324

seq1  ATTAGTGAGTTGTTACATTCACTTAAAATTATTTTTGAGACTCATTTACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGAGTTGTTACATTCACTTAAAATTATTTTTGAGACTCATTTACG  374

seq1  TTGCTGTTGCTGACCTGGAGCTAGCTAGGCAACCAAGCTCGCCTCCGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTGCTGACCTGGAGCTAGCTAGGCAACCAAGCTCGCCTCCGGGG  424

seq1  CTGCCTCCCCCTGCTTCTGCCTCCAGAGAACCAGAATTAAAGACCTCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCCCTGCTTCTGCCTCCAGAGAACCAGAATTAAAGACCTCGCC  474

seq1  ACCAGTAAAATAAGTTAACATGTTGAGCTTAGCATTGTTTTAATGAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAAAATAAGTTAACATGTTGAGCTTAGCATTGTTTTAATGAAACA  524

seq1  GGGAATAAAGAGGAAATTAGCATTAATTGTGGTAAAAGCTTATTCTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAAGAGGAAATTAGCATTAATTGTGGTAAAAGCTTATTCTAGAA  574

seq1  ATGTTTCTTGGATATATATATACCTATGAGGATGAGATAGTAATCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTGGATATATATATACCTATGAGGATGAGATAGTAATCAGACT  624

seq1  GAACTGAACTGGGTCAACATCAGAACGTTTGTTTAAAATTTTGCATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACTGGGTCAACATCAGAACGTTTGTTTAAAATTTTGCATTTAA  674

seq1  GGCATATCCTTAAGTAGAAAGGAGTTGATCATTTTTTTATTATGTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATCCTTAAGTAGAAAGGAGTTGATCATTTTTTTATTATGTGCATT  724

seq1  TTAACATCAATTAAATGAACTAATTTTGAAACCACTGGTTGCCAGTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCAATTAAATGAACTAATTTTGAAACCACTGGTTGCCAGTTCCA  774

seq1  AGTGTGATATTGAGATGAGAACCGGCATGGCTATGGCCTGAGAAAAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATATTGAGATGAGAACCGGCATGGCTATGGCCTGAGAAAAGGGC  824

seq1  TCCATTGCTTAGGGAAGACTCTGGTGGAACCGCAGTGGGTCTCTGGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCTTAGGGAAGACTCTGGTGGAACCGCAGTGGGTCTCTGGAGCA  874

seq1  ATGGGCTGCGGCTGGATTCAACAGCTGCGATCAGTAGGAGGGCTGTTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGCGGCTGGATTCAACAGCTGCGATCAGTAGGAGGGCTGTTCCT  924

seq1  GGCCTGGGAATAAAATATTTGAGCTTCATGGGGCCCCGGGGAACCTCACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGAATAAAATATTTGAGCTTCATGGGGCCCCGGGGAACCTCACT  974

seq1  GACCGATTGTATCACCCACAGGAGGTGCTTACACAGCGGAACCCGAGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGATTGTATCACCCACAGGAGGTGCTTACACAGCGGAACCCGAGGAA  1024

seq1  AACAAGAGGACCCGTACTGCCTACACCCGGGCGCAGCTGCTGGAGCTGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGGACCCGTACTGCCTACACCCGGGCGCAGCTGCTGGAGCTGGA  1074

seq1  GAAGGAATTC  1110
      ||||||||||
seq2  GAAGGAATTC  1084

seq1: chr5_147952253_147952837
seq2: B6Ng01-046J14.g_64_648

seq1  GAATTCTCTCCGAGGAGGATTCTCTCAACTGGGGGTCCTGGAGACATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCGAGGAGGATTCTCTCAACTGGGGGTCCTGGAGACATAGT  50

seq1  ACCTGAATAATTAATCTACCCTCCCATGTTTTACACTCTTTGGGTGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAATAATTAATCTACCCTCCCATGTTTTACACTCTTTGGGTGTGCA  100

seq1  ATTTAAAACATATGAATTGTTTGTTTCTGGAATATTCCATTTAATACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACATATGAATTGTTTGTTTCTGGAATATTCCATTTAATACTTT  150

seq1  TGGACTGCAACTGATTTCGGGTAATTGAGGCAGAAAAAAAAGAAAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCAACTGATTTCGGGTAATTGAGGCAGAAAAAAAAGAAAAACTT  200

seq1  TAGTCAGTGGCTCCTTAATGTAACAAACATTCTAGTTAAAAAAGAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGTGGCTCCTTAATGTAACAAACATTCTAGTTAAAAAAGAGGAAA  250

seq1  TGCGGAGGCTGGAAGGGTGGCTCAGTGGTTAAGAGCACCGGCTGCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGAGGCTGGAAGGGTGGCTCAGTGGTTAAGAGCACCGGCTGCTCTTC  300

seq1  CAGAAGACCCAAGTTGAGTTCTTAGAACCCACAAGGTGGCTTATAACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACCCAAGTTGAGTTCTTAGAACCCACAAGGTGGCTTATAACACT  350

seq1  CTGTGGTTCCAGCTCAAGGAGATCTGATGCCATCTTGATTTCCCTGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTCCAGCTCAAGGAGATCTGATGCCATCTTGATTTCCCTGGGTA  400

seq1  CCAGGTGTGAGAGTAGACATGCATGTAGGTAAAGTACCCATATATGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGTGAGAGTAGACATGCATGTAGGTAAAGTACCCATATATGTAAA  450

seq1  ATAAAAAGGGAAATTCCACAGAGCACAGTGATCCATGCATCTCAACGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGGGAAATTCCACAGAGCACAGTGATCCATGCATCTCAACGCTC  500

seq1  AGGGCCATGCATTTTAGGTCTGACTGAGCATCATAGCAAGATTCTATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATGCATTTTAGGTCTGACTGAGCATCATAGCAAGATTCTATCAT  550

seq1  AAGAGAGAGAAAGAAAGAGAGGGGGGAGAGGGAAA  585
      |||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAAAGAAAGAGAGGGGGGAGAGGGAAA  585