BAC Information

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BAC

Clone NameB6Ng01-046K06
Chromosome5 (Build37)
Map Location 14,342,658 - 14,462,353
singlet/doubletdoublet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046K06.bB6Ng01-046K06.g
ACCDH871740DH871741
length1,0291,002
definitionDH871740|Mus musculus domesticus DNA, BAC clone: B6Ng01-046K06, 5' end.DH871741|Mus musculus domesticus DNA, BAC clone: B6Ng01-046K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,342,658 - 14,343,696)(14,461,806 - 14,462,353)
sequence
gaattctagagcagtaaacttggctctcctaacatccatagacagaatag
aaaaaatatatacagtaagactaattcagaaaacaaggcttgggagtggt
gaatatttatggtaggatattttaagtgatagtgaaggagcgttcttatt
ttgagaaggtgtggattaacggaaagtgagggtagcttagaggacaaatc
tgtgaagcagtcctatcctgaggcaaactggtagagaaactccggagtgg
cttctctggctgctatgtgtcaggtgcctgcgataatacccagttatcta
agacttctccaagatagtctttattcttggaatttgggtgacaaatgtga
acatgaggaataaatacaaggatacataggagggtagacccttttgggca
caaaagactgtgacacttaaagaacagtggtttcattcaacagtgtctca
tggcacagtcatagtacagtaacagcatcctggaggctttggtgtcttga
gttcctgttgatcaggatattttgcctggttggatgcttgctttcagaat
acctgattcttatggggctcttttataacttttacaaaatacttatcatc
tgaaaatttccataaaacattcatgtatctgtagtctcttatttcaatct
gataatcattaataaatcaatgtataatcattttctaattaagtcaagaa
taattattgtaatttttgacatctagcaatattgatagcacatttcttat
cagataccttaaaaaatgatgactattttagtatcattattcctgtaact
ttattgtattccaaataatttcataatgatactttcatatatttaactcc
acaaaatgtataaaagtgttctgtaggtacttatgtgagaaatattccat
aattaaaaaagaaaaaatattgaaacatatagtgtattaagtggcttttg
ttgttgtaaaatgttaagttctagctgtgcatggggccgatgctttatcc
cagcctccggaggtagagcagcggatttc
gaattccaaggctgtttccacttcacactgtccttttttgacctggtcat
ttacctactctactctgctagtctcctgcatttatttttttagttacaag
tagatcagtgtgtagatcaaccaggttttcatttgtgctacagaagttgc
tttaccaaattacctgtgagatcatctagttatttgaaaatgtgaggcaa
actcagcagacagtcccatggtccccagaggagtctccacacccaggtgc
tctagaaatcccaggatcttaggatcaccagtgagttgaacacaacatct
cttccaacaccaccagaaaagactgggaagagcaggatccagggacgcag
gaaccctgtctaaccagtggcttgagttccctcctgtatgcaccagtcta
acttggtcgcgaacttagtggacagtcacacagcccccagaggaggtacc
actcccaggcaatctagcacacccatggtcttaggatcccaggaacctag
gagcttggtcacaccaggatctcagggtttcagaggcaccttgactccca
ggaactttgacacacctagaagctcagtatcactggatccaggaatcaca
ggatcacaaagaaagctgaactctgaggagttctgactcaacccggatta
caggaggacaagctccaatcagatgtagcaagggcaaggagcacttgaga
taacagatggcaagaggcaagcataagaacagaagcaacagaaaccaagg
ttaattggcatcaccagaactcaattcttccaccatagtaagtcctggac
acaccatcaaaccagaaaagcaagatatggatctaaagtcacttcttgtg
atgttgatggaggactttaagaaagacataaataactcctttatagaaac
acaggagaacacatgtaaacaggtagaaactcttaagaggaaacacaaaa
atcccttatataattataggaaaacacatccaaagaggtgaaggatgagc
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14342658_14343696
seq2: B6Ng01-046K06.b_44_1072

seq1  GAATTCTAGAGCAGTAAACTTGGCTCTCCTAACATCCATAGACAGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGCAGTAAACTTGGCTCTCCTAACATCCATAGACAGAATAG  50

seq1  AAAAAATATATACAGTAAGACTAATTCAGAAAACAAGGCTTGGGAGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATATACAGTAAGACTAATTCAGAAAACAAGGCTTGGGAGTGGT  100

seq1  GAATATTTATGGTAGGATATTTTAAGTGATAGTGAAGGAGCGTTCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTATGGTAGGATATTTTAAGTGATAGTGAAGGAGCGTTCTTATT  150

seq1  TTGAGAAGGTGTGGATTAACGGAAAGTGAGGGTAGCTTAGAGGACAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGGTGTGGATTAACGGAAAGTGAGGGTAGCTTAGAGGACAAATC  200

seq1  TGTGAAGCAGTCCTATCCTGAGGCAAACTGGTAGAGAAACTCCGGAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCAGTCCTATCCTGAGGCAAACTGGTAGAGAAACTCCGGAGTGG  250

seq1  CTTCTCTGGCTGCTATGTGTCAGGTGCCTGCGATAATACCCAGTTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGGCTGCTATGTGTCAGGTGCCTGCGATAATACCCAGTTATCTA  300

seq1  AGACTTCTCCAAGATAGTCTTTATTCTTGGAATTTGGGTGACAAATGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTCCAAGATAGTCTTTATTCTTGGAATTTGGGTGACAAATGTGA  350

seq1  ACATGAGGAATAAATACAAGGATACATAGGAGGGTAGACCCTTTTGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGAATAAATACAAGGATACATAGGAGGGTAGACCCTTTTGGGCA  400

seq1  CAAAAGACTGTGACACTTAAAGAACAGTGGTTTCATTCAACAGTGTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACTGTGACACTTAAAGAACAGTGGTTTCATTCAACAGTGTCTCA  450

seq1  TGGCACAGTCATAGTACAGTAACAGCATCCTGGAGGCTTTGGTGTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAGTCATAGTACAGTAACAGCATCCTGGAGGCTTTGGTGTCTTGA  500

seq1  GTTCCTGTTGATCAGGATATTTTGCCTGGTTGGATGCTTGCTTTCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTTGATCAGGATATTTTGCCTGGTTGGATGCTTGCTTTCAGAAT  550

seq1  ACCTGATTCTTATGGGGCTCTTTTATAACTTTTACAAAATACTTATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTCTTATGGGGCTCTTTTATAACTTTTACAAAATACTTATCATC  600

seq1  TGAAAATTTCCATAAAACATTCATGTATCTGTAGTCTCTTATTTCAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTCCATAAAACATTCATGTATCTGTAGTCTCTTATTTCAATCT  650

seq1  GATAATCATTAATAAATCAATGTATAATCATTTTCTAATTAAGTCAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCATTAATAAATCAATGTATAATCATTTTCTAATTAAGTCAAGAA  700

seq1  TAATTATTGTAATTTTTGACATCTAGCAATATTGATAGCACATTTCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTGTAATTTTTGACATCTAGCAATATTGATAGCACATTTCTTAT  750

seq1  CAGATACCTTAAAAAATGATGACTATTTTAGTATCATTATTCCTGTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACCTTAAAAAATGATGACTATTTTAGTATCATTATTCCTGTAACT  800

seq1  TTATTGTATTCCAAATAATTTCATAATGATACTTTCATATATTTAACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTATTCCAAATAATTTCATAATGATACTTTCATATATTTAACTCC  850

seq1  ACAAAATGTATAAAAGTGTTCTGTAGGTACTTATGTGAGAAATATTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTATAAAAGTGTTCTGTAGGTACTTATGTGAGAAATATTCCAT  900

seq1  AATTAAAAAAGAAAAAAATATTGAAACATATAGTGTATTTAGTGGCTTTT  950
      ||||||||||| ||||||||||||||||||||||||||| |||||| |||
seq2  AATTAAAAAAG-AAAAAATATTGAAACATATAGTGTATTAAGTGGC-TTT  948

seq1  TGTTGTTGTTAAAATGTTAAGTTCTAAGCTGTGCATGGTGGCGAATGCCT  1000
      |||||||| |||||||||||||||| |||||||||||| |||  ||||  
seq2  TGTTGTTG-TAAAATGTTAAGTTCT-AGCTGTGCATGG-GGCCGATGC--  993

seq1  TTAATCCCAGCACTCGGGAGGTAGAGGCAGGTGGATTTC  1039
      || |||||||| ||| ||||||||| ||| | |||||||
seq2  TTTATCCCAGC-CTCCGGAGGTAGA-GCA-GCGGATTTC  1029

seq1: chr5_14461806_14462353
seq2: B6Ng01-046K06.g_66_613 (reverse)

seq1  GGAGTCAAGGTGCCTCTGAAACCCTGAGATCCTGGTGTGACCAAGCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAGGTGCCTCTGAAACCCTGAGATCCTGGTGTGACCAAGCTCCT  50

seq1  AGGTTCCTGGGATCCTAAGACCATGGGTGTGCTAGATTGCCTGGGAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTGGGATCCTAAGACCATGGGTGTGCTAGATTGCCTGGGAGTGG  100

seq1  TACCTCCTCTGGGGGCTGTGTGACTGTCCACTAAGTTCGCGACCAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTCTGGGGGCTGTGTGACTGTCCACTAAGTTCGCGACCAAGTTA  150

seq1  GACTGGTGCATACAGGAGGGAACTCAAGCCACTGGTTAGACAGGGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGCATACAGGAGGGAACTCAAGCCACTGGTTAGACAGGGTTCCT  200

seq1  GCGTCCCTGGATCCTGCTCTTCCCAGTCTTTTCTGGTGGTGTTGGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCTGGATCCTGCTCTTCCCAGTCTTTTCTGGTGGTGTTGGAAGAG  250

seq1  ATGTTGTGTTCAACTCACTGGTGATCCTAAGATCCTGGGATTTCTAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGTTCAACTCACTGGTGATCCTAAGATCCTGGGATTTCTAGAGC  300

seq1  ACCTGGGTGTGGAGACTCCTCTGGGGACCATGGGACTGTCTGCTGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTGTGGAGACTCCTCTGGGGACCATGGGACTGTCTGCTGAGTTT  350

seq1  GCCTCACATTTTCAAATAACTAGATGATCTCACAGGTAATTTGGTAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACATTTTCAAATAACTAGATGATCTCACAGGTAATTTGGTAAAGC  400

seq1  AACTTCTGTAGCACAAATGAAAACCTGGTTGATCTACACACTGATCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGTAGCACAAATGAAAACCTGGTTGATCTACACACTGATCTACT  450

seq1  TGTAACTAAAAAAATAAATGCAGGAGACTAGCAGAGTAGAGTAGGTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTAAAAAAATAAATGCAGGAGACTAGCAGAGTAGAGTAGGTAAAT  500

seq1  GACCAGGTCAAAAAAGGACAGTGTGAAGTGGAAACAGCCTTGGAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGTCAAAAAAGGACAGTGTGAAGTGGAAACAGCCTTGGAATTC  548