BAC Information

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BAC

Clone NameB6Ng01-046L16
Chromosome5 (Build37)
Map Location 29,718,255 - 29,863,068
singlet/doubletdoublet
Overlap geneEG620572, Gm1040, Hlxb9
Upstream genePrr8, Shh, LOC100039258, Rnf32, EG664949, Lmbr1
Downstream geneLOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L16.bB6Ng01-046L16.g
ACCDH871804DH871805
length1,0061,106
definitionDH871804|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L16, 5' end.DH871805|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,718,255 - 29,719,271)(29,861,953 - 29,863,068)
sequence
gaattctattttggagatacactacccttccagccagggtagattttaag
ataattatgtgtttgtgtcttcagtaatgtatctgctatcagcttattgc
attaaaggtttgcttgtgaatttgagattatgtgctgatttatagccctt
tcaaataaaaaggattttcttccttacctttttttttcaaaagtacttat
gatttcctctgtgtgaagatccatttgccatcaataaccccctctcttct
gagaccttctcagataaatccagtctgacattcctataatgggcaaggca
gaggagggcttcatgaattacaccaggccagtgtgtgagaaacccccatc
ccacaatttatgagttcccaatgttcccagggcatgctttggtattctga
agagagaagtaggtgtgtttactaaactgacagcccagacagatgtttat
tgagcactgaagatggctgatatcaacactcatctgtaatcatgatttgg
ctctacctacaatgcttactaatcacatctgactgtcactcaggcaaagg
tgctctgtgcttggtttctctgtgtaaaaactttgttctggcatccacag
tagcctcagactaagtataggcctaagccaaacttgctaccttacaaagc
tggtattttatcatgtcatctgacagtgtagctatgatataggccagtaa
caattttgtctgaaagattctatagggagtagagggtgggattggggcta
aatgatgtacattgattacactggatgaattcaggagataacttaacttt
ctgccctgtaactttatcattaactatagagtatagttttttttttttca
tttgcttgagacggggtagcccaggctggccagacttatatatagccttg
gatactcatcttctgctcttcctctggtgctgcatttcagacataacagt
accctcttatgcatgctgagacaatgcagggcctttaaatacatagtgcg
cggcgc
gaattccccagagctttcccccccctgactctgtataatgagccttcaat
gaccaatccttgacttttaaagattattgtccaaagagatatgagactat
attccaggggtttctgagagctgcccagaaatcctgccctgcctcttgtg
tgaggaccttataaagatggaaggctactgatagatttttaaaatttgct
ttgtttttaaggatagaaggaaatttaattaaagttaattacaaagaaat
aaaaatattgagatatttgatcttaaaaaattagggggctggagaggtgg
ctcagtggttaagagtaccgactgctcttctgaaaatcctgagttcaaat
cccagcaaccacatggtggctcacaaccatccataatgagatctgacgcc
ctcttctggtgcatctgaagacagctacagtgtacttagatataataata
aataaatctttaaaaaaaattagatcaaaggcaggggtaggtcacctagc
ctaggtcagacagtaaaaaaatttaggccttgaaaattatataaagggga
agcctggaaataggctcatacagtaagtagacagagatatgaaatacata
atttaggccttgatctcatgaaggtcgggacaggaggcagcagaagcact
gtctcatcagttgatatttgtttaggtagctttatttgctttaaagtgtt
ttatcaaaatttcatgcttaactgatctgtgcaccctgcacaatctatac
aaacatcttaatggtactaaaattttggttgtgagattcatatattgcag
aatatacagctctgacaagattcatctgctggaatgctaaaccgacctgc
tgttccagcccactacttcctgatgttgtccaaagacttacttccataac
ggctttaggatactgctgattccaggccatctcaccgcatccaaactttc
agacagacctggtcaaacttcagtcagctccaaactttcaaatatacaag
acttgataacagaaactaaagaaagcttccttagctaaccagttttctaa
tttcctacccctttccacccctttagaaattctctctcaccatagcttaa
agagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_29718255_29719271
seq2: B6Ng01-046L16.b_49_1054

seq1  GAATTCTATTTTGGAGATACACTACCCTTCCAGCCAGGGTAGATTTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTTGGAGATACACTACCCTTCCAGCCAGGGTAGATTTTAAG  50

seq1  ATAATTATGTGTTTGTGTCTTCAGTAATGTATCTGCTATCAGCTTATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATGTGTTTGTGTCTTCAGTAATGTATCTGCTATCAGCTTATTGC  100

seq1  ATTAAAGGTTTGCTTGTGAATTTGAGATTATGTGCTGATTTATAGCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTTTGCTTGTGAATTTGAGATTATGTGCTGATTTATAGCCCTT  150

seq1  TCAAATAAAAAGGATTTTCTTCCTTACCTTTTTTTTTCAAAAGTACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAAAAGGATTTTCTTCCTTACCTTTTTTTTTCAAAAGTACTTAT  200

seq1  GATTTCCTCTGTGTGAAGATCCATTTGCCATCAATAACCCCCTCTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTCTGTGTGAAGATCCATTTGCCATCAATAACCCCCTCTCTTCT  250

seq1  GAGACCTTCTCAGATAAATCCAGTCTGACATTCCTATAATGGGCAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTCTCAGATAAATCCAGTCTGACATTCCTATAATGGGCAAGGCA  300

seq1  GAGGAGGGCTTCATGAATTACACCAGGCCAGTGTGTGAGAAACCCCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGCTTCATGAATTACACCAGGCCAGTGTGTGAGAAACCCCCATC  350

seq1  CCACAATTTATGAGTTCCCAATGTTCCCAGGGCATGCTTTGGTATTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTTATGAGTTCCCAATGTTCCCAGGGCATGCTTTGGTATTCTGA  400

seq1  AGAGAGAAGTAGGTGTGTTTACTAAACTGACAGCCCAGACAGATGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGTAGGTGTGTTTACTAAACTGACAGCCCAGACAGATGTTTAT  450

seq1  TGAGCACTGAAGATGGCTGATATCAACACTCATCTGTAATCATGATTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACTGAAGATGGCTGATATCAACACTCATCTGTAATCATGATTTGG  500

seq1  CTCTACCTACAATGCTTACTAATCACATCTGACTGTCACTCAGGCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTACAATGCTTACTAATCACATCTGACTGTCACTCAGGCAAAGG  550

seq1  TGCTCTGTGCTTGGTTTCTCTGTGTAAAAACTTTGTTCTGGCATCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGCTTGGTTTCTCTGTGTAAAAACTTTGTTCTGGCATCCACAG  600

seq1  TAGCCTCAGACTAAGTATAGGCCTAAGCCAAACTTGCTACCTTACAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCAGACTAAGTATAGGCCTAAGCCAAACTTGCTACCTTACAAAGC  650

seq1  TGGTATTTTATCATGTCATCTGACAGTGTAGCTATGATATAGGCCAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTTATCATGTCATCTGACAGTGTAGCTATGATATAGGCCAGTAA  700

seq1  CAATTTTGTCTGAAAGATTCTATAGGGAGTAGAGGGTGGGATTGGGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTCTGAAAGATTCTATAGGGAGTAGAGGGTGGGATTGGGGCTA  750

seq1  AATGATGTACATTGATTACACTGGATGAATTCAGGAGATAACTTAACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTACATTGATTACACTGGATGAATTCAGGAGATAACTTAACTTT  800

seq1  CTGCCCTGTAACTTTATCATTAACTATAGAGTATAGTTTTTTTTTTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTAACTTTATCATTAACTATAGAGTATAGTTTTTTTTTTTTCA  850

seq1  TTTGCTTGAGACGGGGTAGCCCAGGCTGGCCAAGAACTTTATATATAGCC  900
      ||||||||||||||||||||||||||||||| |||   ||||||||||||
seq2  TTTGCTTGAGACGGGGTAGCCCAGGCTGGCC-AGA--CTTATATATAGCC  897

seq1  TTGGATTACTCATCTTCTGCCTCTTCCTCCTGGGTGCTGCAATTTCAGAC  950
      ||||| ||||||||||||| |||||||||   |||||||| |||||||||
seq2  TTGGA-TACTCATCTTCTG-CTCTTCCTC--TGGTGCTGC-ATTTCAGAC  942

seq1  AT-ACAGTACCTCTTTATGCAATGCTGAGGACCAAATGCAGGGCCTTTAA  999
      || ||||||||   |||||| ||||||| |||  ||||||||||||||||
seq2  ATAACAGTACCCTCTTATGC-ATGCTGA-GAC--AATGCAGGGCCTTTAA  988

seq1  ATACATACGCGCGC-GCGC  1017
      ||||||| | |||| ||||
seq2  ATACATA-GTGCGCGGCGC  1006

seq1: chr5_29861953_29863068
seq2: B6Ng01-046L16.g_66_1171 (reverse)

seq1  CTCTCTAT-AGCTATGGGTGATGAGAAATTTTCTAAAGGGGTGGGAAGGG  49
      |||||| | |||||| ||||| |||| | ||||||||||||||| |||||
seq2  CTCTCTTTAAGCTAT-GGTGA-GAGAGAATTTCTAAAGGGGTGGAAAGGG  48

seq1  GTAGGGAAATTAGAAAAACTGGTTAGGCTTAAGGAAGCTATCTTTAGTAT  99
      ||| ||||||||| ||||||||||||   |||||||||| |||||||| |
seq2  GTA-GGAAATTAG-AAAACTGGTTAG--CTAAGGAAGCTTTCTTTAGTTT  94

seq1  CTGTTATCAAGTCTTTGTATATTTGGAAGGTTTGGAGCTTGACTGAAGTT  149
      ||||||||||||| |||||||||| ||| ||||||||| ||||||||| |
seq2  CTGTTATCAAGTC-TTGTATATTT-GAAAGTTTGGAGC-TGACTGAAG-T  140

seq1  TTGACCAGGTCTGTCTGAAAGTTTGGATGCGGTGAGATGGCCTGGAATCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAGGTCTGTCTGAAAGTTTGGATGCGGTGAGATGGCCTGGAATCA  190

seq1  GCAGTTATCCTAAAGCCGTTATGGAAGTAAGTCTTTGGACAACATCAGGA  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAG-TATCCTAAAGCCGTTATGGAAGTAAGTCTTTGGACAACATCAGGA  239

seq1  AGTAGTGGGCTGGAACAGCAGGTCGGTTTAGCATTCCAGCAGATGAATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGGCTGGAACAGCAGGTCGGTTTAGCATTCCAGCAGATGAATCT  289

seq1  TGTCAGAGCTGTATATTCTGCAATATATGAATCTCACAACCAAAATTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGCTGTATATTCTGCAATATATGAATCTCACAACCAAAATTTTA  339

seq1  GTACCATTAAGATGTTTGTATAGATTGTGCAGGGTGCACAGATCAGTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATTAAGATGTTTGTATAGATTGTGCAGGGTGCACAGATCAGTTAA  389

seq1  GCATGAAATTTTGATAAAACACTTTAAAGCAAATAAAGCTACCTAAACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAATTTTGATAAAACACTTTAAAGCAAATAAAGCTACCTAAACAA  439

seq1  ATATCAACTGATGAGACAGTGCTTCTGCTGCCTCCTGTCCCGACCTTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACTGATGAGACAGTGCTTCTGCTGCCTCCTGTCCCGACCTTCAT  489

seq1  GAGATCAAGGCCTAAATTATGTATTTCATATCTCTGTCTACTTACTGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAGGCCTAAATTATGTATTTCATATCTCTGTCTACTTACTGTAT  539

seq1  GAGCCTATTTCCAGGCTTCCCCTTTATATAATTTTCAAGGCCTAAATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTATTTCCAGGCTTCCCCTTTATATAATTTTCAAGGCCTAAATTTT  589

seq1  TTTACTGTCTGACCTAGGCTAGGTGACCTACCCCTGCCTTTGATCTAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTCTGACCTAGGCTAGGTGACCTACCCCTGCCTTTGATCTAATT  639

seq1  TTTTTTAAAGATTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGATTTATTTATTATTATATCTAAGTACACTGTAGCTGTCTT  689

seq1  CAGATGCACCAGAAGAGGGCGTCAGATCTCATTATGGATGGTTGTGAGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCACCAGAAGAGGGCGTCAGATCTCATTATGGATGGTTGTGAGCC  739

seq1  ACCATGTGGTTGCTGGGATTTGAACTCAGGATTTTCAGAAGAGCAGTCGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGGGATTTGAACTCAGGATTTTCAGAAGAGCAGTCGG  789

seq1  TACTCTTAACCACTGAGCCACCTCTCCAGCCCCCTAATTTTTTAAGATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTAACCACTGAGCCACCTCTCCAGCCCCCTAATTTTTTAAGATCA  839

seq1  AATATCTCAATATTTTTATTTCTTTGTAATTAACTTTAATTAAATTTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCAATATTTTTATTTCTTTGTAATTAACTTTAATTAAATTTCCT  889

seq1  TCTATCCTTAAAAACAAAGCAAATTTTAAAAATCTATCAGTAGCCTTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTTAAAAACAAAGCAAATTTTAAAAATCTATCAGTAGCCTTCCA  939

seq1  TCTTTATAAGGTCCTCACACAAGAGGCAGGGCAGGATTTCTGGGCAGCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAGGTCCTCACACAAGAGGCAGGGCAGGATTTCTGGGCAGCTC  989

seq1  TCAGAAACCCCTGGAATATAGTCTCATATCTCTTTGGACAATAATCTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACCCCTGGAATATAGTCTCATATCTCTTTGGACAATAATCTTTA  1039

seq1  AAAGTCAAGGATTGGTCATTGAAGGCTCATTATACAGAGTCAGGGGGGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGGATTGGTCATTGAAGGCTCATTATACAGAGTCAGGGGGGGG  1089

seq1  AAAGCTCTGGGGAATTC  1116
      |||||||||||||||||
seq2  AAAGCTCTGGGGAATTC  1106