BAC Information

Click to search

BAC

Clone NameB6Ng01-047B24
Chromosome5 (Build37)
Map Location 138,647,146 - 138,648,248
singlet/doubletsinglet
Overlap geneGm454
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925
Downstream geneBC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047B24.bB6Ng01-047B24.g
ACCDH872072DH872073
length1,1651,107
definitionDH872072|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B24, 5' end.DH872073|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcagcatccttatttatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaagcttgtacaaccactttggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggagggtcccccaatacctctcctgggc
atatatccagatgtcccaaccggtaagatggacacacccatgctccacta
tgttcatagcagccttatttataatagctagaagctggacagaacccaga
tgcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggttggacctggagggcatcatgctgagtgaggtaacacaatcacaa
aggaacgcaaatgatatgtactcactgataagtggatattaggccagaaa
cttagtatgcctgagatataagagacaatttgtgaaacacatgaaactga
agaagaaggaagaccaaagtgtggacactttgccccttcttagaattgga
aacaatcacccatggaaaggagttacagagacaaagtttggagctgagac
aaaaagatggaccatctagagactgccatatccagggatccatcccataa
ctagcctccaaacaatgacaccattgcatacactagcaagcgtttgttgc
aaggacactgatatagctgtctcttgtgagactaggccggggcctagcaa
acacataagtggatgctcacagtcagctaatttgatggatcacaggcccc
aatgggaggagctagagaaagtatccaggagctaaagagtcctgcaaccc
ttataggtgtacaacattatgactaacagtaccccgagcttttgacttct
agctgcaatgtatcaagatggcctagtagcatcactgagagggcccattg
acatgcaactttatatgccagtacaagaacgccagcccaaaagttggaat
tgtggtaatggaatg
gaattcctgagtaaatgtatgcaattgacatggatacagctgtgtcaagg
accccaatgcctcagaccatgggaatttggaaaaaccatccctaagctag
tcttaaggaaattgcaaaacttcccctcctggtctgagagtgaatgttga
tagagatgaccaccaagaatagcatcagctgttcctatgtcagagggcca
gcaggtggcagttgccatggcttccattgggcagtctgcttctgacatta
ggagaaggttacagtgtctagagtgtctgcaaacattatctttgcaagat
ctggtaaaagaggcagagaaagtgtaccataagagagagactgaagaaaa
ataaagaaaaagagaaaagagagaggctgaggaaagagaaagtagacgag
atagaaggctggaaagaactttaattaggattttggctacattcacaggt
gataaagaagtgtatagaaaaggtggagaaagtaggcagacagggtacct
gagcaacacagggcagagaagacctcagaactccggaggaacttcatgac
cacctctatagataaggaccaatgtgcatactgtaatgaaaagggacact
ggacaagagactgccccaagaaaaaagacagacatcacacagcccaaggt
ccttaccctagaagatgatgactagggaagacggggctcggacccctctc
cctgagcctagggtaaccctaactgtggaggggaccccacagagttcctc
gtttataccggaacagagttttcagtccctgacagagccactggagaaat
tgtcctcttcattactccactaacctcttttaaccaggatctcctgcatg
gtgtaattactcagagcacaccttgacatgggaccactagatacccacca
ctactcccactgtattttatttatcttttgattttaatttaaaaaatttt
ccgaaacaggttctctgtgaaccctggctgtcctgaactcacttctgtaa
accagaatgaaatccaactctcagaattcctcctgtctctggctcccaag
tgctctgggaataaagtgcgtggtccgtcccacgtgcactgaatccatta
tatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138647146_138648248
seq2: B6Ng01-047B24.g_70_1176

seq1  GAATTCCTGAGTAAATGTATGCAATTGACATGGATACAGCTGTGTCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTAAATGTATGCAATTGACATGGATACAGCTGTGTCAAGG  50

seq1  ACCCCAATGCCTCAGACCATGGGAATTTGGAAAAACCATCCCTAAGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAATGCCTCAGACCATGGGAATTTGGAAAAACCATCCCTAAGCTAG  100

seq1  TCTTAAGGAAATTGCAAAACTTCCCCTCCTGGTCTGAGAGTGAATGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGAAATTGCAAAACTTCCCCTCCTGGTCTGAGAGTGAATGTTGA  150

seq1  TAGAGATGACCACCAAGAATAGCATCAGCTGTTCCTATGTCAGAGGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGACCACCAAGAATAGCATCAGCTGTTCCTATGTCAGAGGGCCA  200

seq1  GCAGGTGGCAGTTGCCATGGCTTCCATTGGGCAGTCTGCTTCTGACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGCAGTTGCCATGGCTTCCATTGGGCAGTCTGCTTCTGACATTA  250

seq1  GGAGAAGGTTACAGTGTCTAGAGTGTCTGCAAACATTATCTTTGCAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGTTACAGTGTCTAGAGTGTCTGCAAACATTATCTTTGCAAGAT  300

seq1  CTGGTAAAAGAGGCAGAGAAAGTGTACCATAAGAGAGAGACTGAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAAAGAGGCAGAGAAAGTGTACCATAAGAGAGAGACTGAAGAAAA  350

seq1  ATAAAGAAAAAGAGAAAAGAGAGAGGCTGAGGAAAGAGAAAGTAGACGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAAAGAGAAAAGAGAGAGGCTGAGGAAAGAGAAAGTAGACGAG  400

seq1  ATAGAAGGCTGGAAAGAACTTTAATTAGGATTTTGGCTACATTCACAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGCTGGAAAGAACTTTAATTAGGATTTTGGCTACATTCACAGGT  450

seq1  GATAAAGAAGTGTATAGAAAAGGTGGAGAAAGTAGGCAGACAGGGTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAAGTGTATAGAAAAGGTGGAGAAAGTAGGCAGACAGGGTACCT  500

seq1  GAGCAACACAGGGCAGAGAAGACCTCAGAACTCCGGAGGAACTTCATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACACAGGGCAGAGAAGACCTCAGAACTCCGGAGGAACTTCATGAC  550

seq1  CACCTCTATAGATAAGGACCAATGTGCATACTGTAATGAAAAGGGACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTATAGATAAGGACCAATGTGCATACTGTAATGAAAAGGGACACT  600

seq1  GGACAAGAGACTGCCCCAAG-AAAAAGACAGACATCACACAGCCCAAGGT  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGACAAGAGACTGCCCCAAGAAAAAAGACAGACATCACACAGCCCAAGGT  650

seq1  CCTTACCCTAGAAGATGATGACTAGGGAAGACGGGGCTCGGACCCC-CTC  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTACCCTAGAAGATGATGACTAGGGAAGACGGGGCTCGGACCCCTCTC  700

seq1  CCTGAGCCTAGGGTAACCCTAACTGTGGAGGGGACCCCACAGAGTTCCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCCTAGGGTAACCCTAACTGTGGAGGGGACCCCACAGAGTTCCTC  750

seq1  GTTAATACCGGAACAGAGTTTTCAGT-CCTGACAGAGCCACTGGAGAAAT  797
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTTATACCGGAACAGAGTTTTCAGTCCCTGACAGAGCCACTGGAGAAAT  800

seq1  TGTCCTCTTCATTACTCCACTAACCCTCTTTTACCCAGGATCTCCTGCAT  847
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TGTCCTCTTCATTACTCCACTAA-CCTCTTTTAACCAGGATCTCCTGCAT  849

seq1  GGTGTAATTACTCAGGAGCACACCTTGACATGGGACCACTAGATACCCAC  897
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTGTAATTACTCA-GAGCACACCTTGACATGGGACCACTAGATACCCAC  898

seq1  CACTTACT-CCACTGTATTTTATTTTATTTTTGATTTTTAATTTTTAAAA  946
      ||| |||| ||||||||||||||||   |||||||||| |   |||||||
seq2  CAC-TACTCCCACTGTATTTTATTTATCTTTTGATTTTAA---TTTAAAA  944

seq1  AATTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  996
      |||||| ||| |||||  ||||||||| | ||||||||||||| ||||||
seq2  AATTTTCCGAAACAGG--TTCTCTGTG-AACCCTGGCTGTCCT-GAACTC  990

seq1  AC-TCTGTAGACCAGAATGGACTCAAA--CTCAGAAATCCACCTGTCTCT  1043
      || |||||| ||||||||| | || ||  ||||||| ||| |||||||||
seq2  ACTTCTGTAAACCAGAATGAAATCCAACTCTCAGAATTCCTCCTGTCTCT  1040

seq1  GCCTCCCAAGTG--CTGGGAATAAAG-GCGTGGGCCG--CCACTGTCCA-  1087
      | ||||||||||  |||||||||||| |||||| |||  |||| || || 
seq2  GGCTCCCAAGTGCTCTGGGAATAAAGTGCGTGGTCCGTCCCAC-GTGCAC  1089

seq1  --GATCCATTATATTTTA  1103
         |||||||||||||||
seq2  TGAATCCATTATATTTTA  1107