BAC Information

Click to search

BAC

Clone NameB6Ng01-047D13
Chromosome5 (Build37)
Map Location 15,112,598 - 15,185,649
singlet/doubletdoublet
Overlap geneSpeer4d, 4930572O03Rik
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047D13.bB6Ng01-047D13.g
ACCDH872144DH872145
length1,140880
definitionDH872144|Mus musculus domesticus DNA, BAC clone: B6Ng01-047D13, 5' end.DH872145|Mus musculus domesticus DNA, BAC clone: B6Ng01-047D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,184,449 - 15,185,649)(15,112,598 - 15,113,571)
sequence
gaattcaccaggaaagaacaagagcccaaaaggcagaggagaagtgttca
tgggtgcactagccagttacctctggaagagcagctgcatggattcagga
tgcacttcatgcacactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagtcctaatcaaaatgcttctagagaactccacactgagtca
gggctttctgttcccaagcaaaccacagcactgatatccatctgtttttc
tctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcat
cttaattgccttgccaaagggttggaaaggagcaccactttttgttcaaa
agacaacttcagaaaacaaaagagaagcctcaaatgggccaaaagccaca
aattgaaaaacaaaagaaaaacaaggctggctgtctactgccagcaggag
ttgactagggagtggagctctgactccaaaatagtcacttttccattttg
tcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggatgt
tccaggaagaaaacagggtctctttgttgcaagaactgcattctcacttg
tatccaatgctgataactggcagcagaaactctgggagggtcacatctat
gtggtgacacaggaagctttctccagggtctagcacattcttaccagagc
ctcttggcctggttcgctatctcatctaaatgttcactcgaattaaggga
cacatggtgtaattggaaatggacagacacatttacttatagttttggca
taactggagaaagagaaagtctcagctacattccaccaggcccatagcac
tctcagaccaatagaaggatgaaagataggaaatacacacttcagtgtca
gctgtgggcccagtttccagagatgggagatggtcattttctcagtgcag
agatgatgccctttggtggtcatttcactcacagttgtagtacttcagag
tctgctcttatgctctttacagtagcgtgacacattaaaaacattcaaca
aagcaaagtgattccttcgctattatcagataaaacgatattatgctagt
tcagttagatctagtggttcattttacactttgattgggt
gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgc
aagaaacatatcatgcaaatgaaatggaagcagtattgaaagtctgagta
gccggtgggcatccctgcacatgtgcctgtgggtagctgacagatcagct
ggtttaaaatcaaggctggtggtctagtcaatcatggtccctgttctagt
gctaaaccaaattctggagaaagctctattgttgttaagacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctttcgtcttagctttgtctccgtaactcattccatgggtat
tttgttccctattctgacactactgcatatgcgagcaaggttttgctgaa
aggaccttgataaagctgtcttgtgaggctatgccagtacctggcaaaca
gaagtggatgctcatagtcatttgtaggatggagcacagggcctccaatg
gagaagctagagaaagcacccaaggagctgaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtacccccagagcttgtgtctcta
gctgcatatgtagcagaagatggcctagtcagccatcattggtaagagag
gcccctaggtcttgcaaactttatatgccccagtacagggccaagaaatg
ggagtgggtgaatgggggagcagggcgaggggagggtatagagaaattta
gggatagcatttgaaatgtaataaaaatttaaataatatatataatatta
taagacttgagaggagcaatgccactcatatgtgtgcttatgaaggggca
gctctgtttccataaaactatggtcccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15184449_15185649
seq2: B6Ng01-047D13.b_46_1185 (reverse)

seq1  ACCCAACTCAAAAGTGTAAAATGAAACCAACTAAGATCTTTAAACTGAAC  50
      |||||| || |||||||||||||||  | ||| ||||||   ||||||||
seq2  ACCCAA-TC-AAAGTGTAAAATGAA--CCACT-AGATCT---AACTGAAC  42

seq1  TAGCTATAATTATCTGTTTTTATCCTTGGTAAATAAACAAAGGGGATCAC  100
      |||| |||| ||||   |||||||  || |||   | | || || |||||
seq2  TAGC-ATAA-TATC--GTTTTATC--TGATAA--TAGCGAA-GGAATCAC  83

seq1  TCTGCTTTGTTTGAATGGTTTTTTCTTAAATGTTGTCACGCTTAACTGTA  150
      | ||||||| ||||||| ||||      |||| |||||||||  ||||||
seq2  TTTGCTTTG-TTGAATGTTTTT------AATG-TGTCACGCT--ACTGTA  123

seq1  AAGGGGCCATAAGAAGCAAGACTCCCTGAAGGAACTACCAAACTGTGAGT  200
      ||| |  |||||| ||| |||||  ||||| | |||||  ||||||||||
seq2  AAGAG--CATAAG-AGC-AGACT--CTGAA-GTACTAC--AACTGTGAGT  164

seq1  GAAAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGAGGAAAACGAC  250
      | ||||| ||   |||||||||||||||||| ||||||   ||||| |||
seq2  G-AAATGACC--ACCAAAGGGCATCATCTCT-GCACTG--AGAAAATGAC  208

seq1  CATCTCCCATCTCCTGGAAACTGGGCCCACAGCTGACACTGAAGTGTGTA  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCATCT-CTGGAAACTGGGCCCACAGCTGACACTGAAGTGTGTA  257

seq1  TTTTCCATCCTTCTATTTGTGTATCTTTCATCCTTCTATTTGGTCTGAGA  350
      ||| |                ||||||||||||||||| |||||||||||
seq2  TTTCC----------------TATCTTTCATCCTTCTA-TTGGTCTGAGA  290

seq1  GTGCTATGGGCCTGGTGGAATGTAGCTGAGACTTTCTCCTTTTCCAGTTA  400
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  GTGCTATGGGCCTGGTGGAATGTAGCTGAGACTTTCTCTTTCTCCAGTTA  340

seq1  TGGCCAAAACTATAAGTAAATGTGTCTGTCCATTTCCAATTACACCATGT  450
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  T-GCCAAAACTATAAGTAAATGTGTCTGTCCATTTCCAATTACACCATG-  388

seq1  TGTCCCTTAATGCGAGTGAGCATTTAGATGAGATAGCGAACCTGGGCAAG  500
      ||||||||||| ||||||| |||||||||||||||||||||| || ||||
seq2  TGTCCCTTAATTCGAGTGAACATTTAGATGAGATAGCGAACCAGGCCAAG  438

seq1  AGGCTTTGGTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCTTGTGTCACC  550
      ||||| |||||||| ||||||||||||||||||||||||| |||||||||
seq2  AGGCTCTGGTAAGAATGTGCTAGACCCTGGAGAAAGCTTCCTGTGTCACC  488

seq1  ACATATATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGA  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGA  538

seq1  TACAAGTGAGAATGCAGTTCTTGCAACAAAGAGA-CCTGTTTTCTTCCTG  649
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACAAGTGAGAATGCAGTTCTTGCAACAAAGAGACCCTGTTTTCTTCCTG  588

seq1  GAACATCCTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTTGCCATCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCCTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTTGCCATCATT  638

seq1  GACAAAATGTTAAAGTGACTATTTTGGAGTCAGAGCTCCTCTCCCTGGTG  749
      |||||||||  |||||||||||||||||||||||||||| |||||| || 
seq2  GACAAAATGGAAAAGTGACTATTTTGGAGTCAGAGCTCCACTCCCTAGTC  688

seq1  AACGCCTGCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAA  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAA  738

seq1  TTTGTGGCTTTTGGCCCGTTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGT  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGTGGCTTTTGGCCCATTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGT  788

seq1  CTTCTGAACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAGGCAATTA  899
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTTTGAACAAAAAGTGGTGCTCCTTTCCAACCCTTTGGCAAGGCAATTA  838

seq1  AGATGATTTTGTGCTTTGTTTTTCAATTTGGAAGGATGTCTTAAGAGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTTTGTGCTTTGTTTTTCAATTTGGAAGGATGTCTTAAGAGTCA  888

seq1  GAGAAAAACAGATGGAGATCAGTGCTGTGGTTTGCTTGGGAACAGAAAGC  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGAAAAACAGATGGATATCAGTGCTGTGGTTTGCTTGGGAACAGAAAGC  938

seq1  CCTGACTCAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGACTTAGTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGACTTAGTAA  988

seq1  GAGATGACTTTCCACAGCCATCCAGCATGGCACCCAGTGTGCATGAAGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACTTTCCACAGCCATCCAGCATGGCACCCAGTGTGCATGAAGTG  1038

seq1  CATCCTGAATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTAGTGCACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTAGTGCACC  1088

seq1  CATGAACACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAAT  1138

seq1  TC  1201
      ||
seq2  TC  1140

seq1: chr5_15112598_15113571
seq2: B6Ng01-047D13.g_1_949

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50
                                                        
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50

seq1  NNNNNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTT  100
                         |||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTT  100

seq1  TGTCAAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGC  150
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TGTCAAGTTGATAAAATGCAAGAAACATATCATGCAAATGAAATGGAAGC  150

seq1  AGCATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTG  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTG  200

seq1  GGTAGCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAA  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTAGCTGACAGATCAGCTGGTTTAAAATCAAGGCTGGTGGTCTAGTCAA  250

seq1  TCATGGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTG  300
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  TCATGGTCCCTGTTCTAGTGCTAAACCAAATTCTGGAGAAAGCTCTATTG  300

seq1  TTGTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TTGTTAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCG  350

seq1  GGTGGGGTAGTCTCTGGATGGTCCATCCTTTCTTCTTAGCTTTGTCTCCG  400
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGTGGGGTAGTCTCTGGATGGTCCATCCTTTCGTCTTAGCTTTGTCTCCG  400

seq1  TAACTCCTTCCATGGCTTTTTTGTTCCCTATTCTGACACTACTGCATATG  450
      |||||| |||||||| | ||||||||||||||||||||||||||||||||
seq2  TAACTCATTCCATGGGTATTTTGTTCCCTATTCTGACACTACTGCATATG  450

seq1  CCAGCAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTA  500
      | |||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CGAGCAAGGTTTTGCTGAAAGGACCTTGATAAAGCTGTCTTGTGAGGCTA  500

seq1  TGCCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCATCTATAGGA  550
      ||||||| ||||||||  ||||||||||||||||| |||||| | |||||
seq2  TGCCAGTACCTGGCAA--ACAGAAGTGGATGCTCATAGTCATTTGTAGGA  548

seq1  TGGAGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCT  598

seq1  GAAGGGATCTGCAACCCTATAAGTGGAACAACAATATGAACTAACCAGTA  650
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTA  648

seq1  CCCCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGT  698

seq1  CAGCCAGCATTGGGAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCC  750
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCATTGGTAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCC  748

seq1  GCAGTACAGGGCCAAGAAATAGGAGTGGGTGGGTGGGGGAGCAGGGCGAG  800
       ||||||||||||||||||| ||||||||||  |||||||||||||||||
seq2  CCAGTACAGGGCCAAGAAATGGGAGTGGGTGAATGGGGGAGCAGGGCGAG  798

seq1  GGGAGGGTATAGAGAACTTTAGGGATAGCATTTGAAATGTAAATAAAAAA  850
      |||||||||||||||| ||||||||||||||||||||||| |||||||  
seq2  GGGAGGGTATAGAGAAATTTAGGGATAGCATTTGAAATGT-AATAAAA--  845

seq1  TATTTAATAATAATAATAATAATAATAATAATAAAGACTTGAGAGGAGCA  900
       |||||     |||||||   |||||| ||   |||||||||||||||||
seq2  -ATTTA-----AATAATATATATAATATTA--TAAGACTTGAGAGGAGCA  887

seq1  ATGCCGCCTCAGTAATGTGCTGGCTTTATGATAGGGGCAGCCTCTGTTTC  950
      |||||  ||||    |||||     |||||| |||||||| |||||||||
seq2  ATGCC-ACTCATATGTGTGC-----TTATGA-AGGGGCAG-CTCTGTTTC  929

seq1  CATTATAAACTAATTGCTCCCACT  974
      |||   ||||||  || |||||||
seq2  CAT--AAAACTA--TGGTCCCACT  949