BAC Information

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BAC

Clone NameB6Ng01-047F20
Chromosome5 (Build37)
Map Location 29,737,531 - 29,893,839
singlet/doubletdoublet
Overlap geneEG620572, Gm1040, Hlxb9, LOC619355
Upstream genePrr8, Shh, LOC100039258, Rnf32, EG664949, Lmbr1
Downstream geneUbe3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047F20.bB6Ng01-047F20.g
ACCDH872247DH872248
length9911,022
definitionDH872247|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F20, 5' end.DH872248|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,892,866 - 29,893,839)(29,737,531 - 29,738,081)
sequence
gaattcagaatgaatgcagaactacctgcaacatgccttggcagtttctc
taataaagatttttttgttttgttttttgttttttgtttttgttttgttt
ttcaagacagggtttctctgtatagccctggctgtcctgaactcactttg
tagaccaggctggccttgaactcagaaacctgcctgcctgtgcctcccga
gcgctggggttaaaggcatgtgccaccatgcctggctctaataaagattt
aaacacaaattcttaccatatgaactagcaattgtccaggagtaaggagg
gctgtgactgaaaccacacctgaacatgacacttgcagcagctttgtaat
tgcccaaatctggaaacaaccaaacagcaaaaggagagtaactattgtac
aacacctgagatggcctttgagaacaggattttacactgatgaaacacta
gtgcccaaaggtcacactggtaccatgaaattccatttagaacagagcca
cggtatgagagttgcaggcaaggtagaggagagcgcaatagtctctggtg
ccaggaaaatcagtagttgtgatagtggttgcacaaaagtacacgtgaca
aggtgacccaagtcagtttgggtgacacagaactatttggaggagacatt
gaatgtgttgttatcttgtttgtggcagtgataccattgggtgtatactc
agaaataatcagtacacattaaatacagatatctgccccttctacataat
ttcaaatacctaagtcagttatggttcaaaaatattaaatggaaaattcc
agatacaagaaaactcacaagtagttttctaagtaatcggatgaaatctt
actgttcttcctataacctgaatgatgccctcatttatatccacattgca
cttgtaccttcccattagacactagcagtcagctttgctatcatatcagt
ttcactaatgcttgtgagtgtcaatgctctttgaggaaaag
gaattcctaaaattatattagtaattatttaaggtcttgcactggctggt
tttgtgtgtcaacttgacacaagctggagttatcatagggaaaggaggct
cccttgagaaaatgcctccatgaaatctagctgtaaagcattttctcaaa
tagtgatcaagagtgggagtgtccattgtgggtggtgccattcctggtct
ggtagccctgggttctataagaaaggaggctgagcaagccagggtaaaca
acccagtaaacagcatccctccatggcctctgcatgagctccaggttcct
gccctgtgtgagctcctgtcctgacttcctttggtgatgaacagcaatgt
gaaagtgtaaactgaataaaccctttcctccccaacttgcttcttggtca
tgatgttttatgcaggaatagaaaccctgactaagacagatcttttatta
taggactgctattaagtcctttctgatttcaaaactgcaatgacaactct
gtcagtcttcaagtgtcatgagttaattgcttcagagatagcaaataggc
atctacaacttaaagcacattccaagaggttgtaaaacaattaaccatag
gttgtaaaaagagaaccaaagatttactataggtgtaaggaaagaagata
aaatattgactgggtttatctatacaaaacttcatgaataacttagtcac
aaaaattctggtttttaactttcagtggcctgttgagctagtgacagata
ttgaatgtttagctaagtaattattcttttttcccaagatttatttgttt
gtttgtttgtttattatatgtgtgtacactgtagctgtcttcagacactc
cagaggagggcatcagatttatgttacggatggttgtgagccatgtggtt
gctgggatttaaactcagactttggagagcagtcgtgctctacccactga
gcatctcacagcctctttgagatttaatacatgtgtattatttgatctta
tcagcccattctctcattcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_29892866_29893839
seq2: B6Ng01-047F20.b_44_1011 (reverse)

seq1  CTCACAAGCATTAAGTGAAAACTGATATGATAGCAAAGCTGACTGCTAAG  50
      |||||||||||| |||| ||||||||||||||||||||||||||||| ||
seq2  CTCACAAGCATT-AGTG-AAACTGATATGATAGCAAAGCTGACTGCT-AG  47

seq1  TGTCTAATGGGAAGGTAACAAGTGCAAATGTGGATATTAAATGAGGGCAT  100
      |||||||||||||||| |||||||| |||||||||| |||||||||||||
seq2  TGTCTAATGGGAAGGT-ACAAGTGC-AATGTGGATA-TAAATGAGGGCAT  94

seq1  CATTCAGGTTATAGGAAGAACAGTAAGATTTCATCCGATTACTTAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGTTATAGGAAGAACAGTAAGATTTCATCCGATTACTTAGAAAA  144

seq1  CTACTTGTGAGTTTTCTTGTATCTGGAATTTTCCATTTAATATTTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTGAGTTTTCTTGTATCTGGAATTTTCCATTTAATATTTTTGAA  194

seq1  CCATAACTGACTTAGGTATTTGAAATTATGTAGAAGGGGCAGATATCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACTGACTTAGGTATTTGAAATTATGTAGAAGGGGCAGATATCTGT  244

seq1  ATTTAATGTGTACTGATTATTTCTGAGTATACACCCAATGGTATCACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGTGTACTGATTATTTCTGAGTATACACCCAATGGTATCACTGC  294

seq1  CACAAACAAGATAACAACACATTCAATGTCTCCTCCAAATAGTTCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAAGATAACAACACATTCAATGTCTCCTCCAAATAGTTCTGTGT  344

seq1  CACCCAAACTGACTTGGGTCACCTTGTCACGTGTACTTTTGTGCAACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAACTGACTTGGGTCACCTTGTCACGTGTACTTTTGTGCAACCAC  394

seq1  TATCACAACTACTGATTTTCCTGGCACCAGAGACTATTGCGCTCTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAACTACTGATTTTCCTGGCACCAGAGACTATTGCGCTCTCCTCT  444

seq1  ACCTTGCCTGCAACTCTCATACCGTGGCTCTGTTCTAAATGGAATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCTGCAACTCTCATACCGTGGCTCTGTTCTAAATGGAATTTCAT  494

seq1  GGTACCAGTGTGACCTTTGGGCACTAGTGTTTCATCAGTGTAAAATCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCAGTGTGACCTTTGGGCACTAGTGTTTCATCAGTGTAAAATCCTG  544

seq1  TTCTCAAAGGCCATCTCAGGTGTTGTACAATAGTTACTCTCCTTTTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGGCCATCTCAGGTGTTGTACAATAGTTACTCTCCTTTTGCTG  594

seq1  TTTGGTTGTTTCCAGATTTGGGCAATTACAAAGCTGCTGCAAGTGTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGTTTCCAGATTTGGGCAATTACAAAGCTGCTGCAAGTGTCATG  644

seq1  TTCAGGTGTGGTTTCAGTCACAGCCCTCCTTACTCCTGGACAATTGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGTGGTTTCAGTCACAGCCCTCCTTACTCCTGGACAATTGCTAG  694

seq1  TTCATATGGTAAGAATTTGTGTTTAAATCTTTATTAGAGCCAGGCATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGGTAAGAATTTGTGTTTAAATCTTTATTAGAGCCAGGCATGGT  744

seq1  GGCACATGCCTTTAACCCCAGCGCTCGGGAGGCACAGGCAGGCAGGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGCCTTTAACCCCAGCGCTCGGGAGGCACAGGCAGGCAGGTTTC  794

seq1  TGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCAGGACAGCCAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCAGGACAGCCAGGGC  844

seq1  TATACAGAGAAACCCTGTCTTGAAAAACAAAACAAAAACAAAAAACAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGAAACCCTGTCTTGAAAAACAAAACAAAAACAAAAAACAAAA  894

seq1  AACAAAACAAAAAAATCTTTATTAGAGAAACTGCCAAGGCATGTTGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAAAATCTTTATTAGAGAAACTGCCAAGGCATGTTGCAGG  944

seq1  TAGTTCTGCATTCATTCTGAATTC  974
      ||||||||||||||||||||||||
seq2  TAGTTCTGCATTCATTCTGAATTC  968

seq1: chr5_29737531_29738081
seq2: B6Ng01-047F20.g_553_1088

seq1  GCAATGACAACTCTGTCAGTCTTCAAGTGTCATGAGTTAATTGCTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGACAACTCTGTCAGTCTTCAAGTGTCATGAGTTAATTGCTTCAGA  50

seq1  GATAGCAAATAGGCATCTACAACTTAAAGCACATTCCAAGAGGTTGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAAATAGGCATCTACAACTTAAAGCACATTCCAAGAGGTTGTAAA  100

seq1  ACAATTAACCATAGGTTGTAAAAAGAGAACCAAAGATTTACTATAGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAACCATAGGTTGTAAAAAGAGAACCAAAGATTTACTATAGGTGT  150

seq1  AAGGAAAGAAGATAAAATATTGACTGGGTTTATCTATACAAAACTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGAAGATAAAATATTGACTGGGTTTATCTATACAAAACTTCATG  200

seq1  AATAACTTAGTCACAAAAATTCTGGTTTTTAACTTTCAGTGGCCTGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTAGTCACAAAAATTCTGGTTTTTAACTTTCAGTGGCCTGTTGA  250

seq1  GCTAGTGACAGATATTGAATGTTTAGCTAAGTAATTATTCTTTTTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTAGTGACAGATATTGAATGTTTAGCTAAGTAATTATTCTTTTTTCCC-  299

seq1  AAGATTTATTTGTTTGTTTGTTTGTTTATTATATGTGTGTACACTGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTTGTTTGTTTGTTTGTTTATTATATGTGTGTACACTGTAGC  349

seq1  TGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTATGTTACGGATGGTT  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACACTCCAGAGGAGGGCATCAGATTTATGTTACGGATGGTT  399

seq1  GTGAGCCATGTGGTTGCTGGGATTTAAACTCAGGACCTTTGGAAGAGCAG  450
      |||||||||||||||||||||||||||||||||   |||||| |||||||
seq2  GTGAGCCATGTGGTTGCTGGGATTTAAACTCAG--ACTTTGG-AGAGCAG  446

seq1  TCGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCTTTGAGAATTTA  500
      || |||||| ||||||||||| ||||||| ||| |||||||||||  || 
seq2  TC-GTGCTC-TACCCACTGAG-CATCTCA-CAG-CCTCTTTGAGA--TTT  489

seq1  AATACATGTGTATTATTTTGATCTTATCCAGCCCCATTCCTCTCATCCAG  550
      ||||||||||||||| ||||||||||| ||| |||||| ||||||| |||
seq2  AATACATGTGTATTA-TTTGATCTTAT-CAG-CCCATT-CTCTCATTCAG  535

seq1  T  551
      |
seq2  T  536