BAC Information

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BAC

Clone NameB6Ng01-047H22
Chromosome5 (Build37)15 (Build37)
Map Location 18,084,511 - 18,084,57743,155,816 - 43,156,556
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047H22.bB6Ng01-047H22.g
ACCDH872338DH872339
length7951,012
definitionDH872338|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H22, 5' end.DH872339|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,577)(43,155,816 - 43,156,556)
sequence
gaattcttacctgaggaataccgaatggctgagaagcacctgaaaaaaat
gttcagcatccttagtcatcagggaaaagcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaagtgacag
cagatgctggcaagaatgtgaagaaagaggaacattcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactactggaggatcccgcaatacctctcctggg
catatatccaaaggatgttccaactgataagaaggacacatgctccactg
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tatccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacctaatcacaa
aagaactcaaatgatatgcactcactgataaatggatattagcccagaaa
cttagaatacccaagatacaagatacaatttgcaaaacacatgaaattca
agaacgaagaccaaagcgtggacactttgccccttcttagaattgggaac
aaaaatgcccatggaaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatctagagactgccatatccggggatttatccc
gaattccagactgaagggcaaaaaaggctagacagatgctccagtggtta
cgagtggtggctgctcttccagaagacccggttcaattcctaatacccac
atggtgtctcattgtctgtctgtaactgcagtcccaggaaatgcaaggcc
ttcttgcctcaatgatcatgcacatggtgcacagatatacatgcaggcaa
aacacccatatacatgaaataataaaagttcaagcaaaggaaagaggaag
agagataagcattcatgcctgttcactttctgaccatgggtgctgactta
gccagggtttctattcctgcacaaatatcatgaccaagaagcaagttgtg
gaggaaagagtttgttcggcttacacttccatactgctgttcatcactaa
ggaagtcaggactggagctcaagcaggtcaggaagcaggagctgatgcag
aggccatgaagggatgttccttactggcttgcttcccctggcttgctcag
cctgctctcttatagaacccaagactaccagcccagagatggtcccaccc
acaagggacctttcccccttgatcactaattgagaaaatgccttagagtt
ggatctcatggaggcatttcctcaactgaagctccttcttctgtgataac
tccagctgtatcaagttgacacaaaactagccagtacaggtgctatgatc
acctggctcacatcttgctggtatgtcatcccagccatattggactgtac
cctcaagccatgagccaaatttaacccttactttcttcatttcttgattc
atacactgtctgtctcagcttgaaatacagctgaccttgactagtcaaat
attgtagtgttttgatagacagctgcatagactcatgtgttggatacttc
acataagagtgcactatagagtatgtcttgtgagtaggtatcagtctttc
tgctgctgtggagctgagactctagctctcagcatcatgtcttctgcatg
accatactctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084577
seq2: B6Ng01-047H22.b_364_430 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACACAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGAA  67
      ||||||| |||||||||
seq2  CTTCTTATCAGTTGGAA  67

seq1: chr15_43155816_43156556
seq2: B6Ng01-047H22.g_369_1079

seq1  CCAGGGTTTCTATTCCTGCACAAATATCATGACCAAGAAGCAAGTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTTCTATTCCTGCACAAATATCATGACCAAGAAGCAAGTTGTGG  50

seq1  AGGAAAGAGTTTGTTCGGCTTACACTTCCATACTGCTGTTCATCACTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGTTTGTTCGGCTTACACTTCCATACTGCTGTTCATCACTAAG  100

seq1  GAAGTCAGGACTGGAGCTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGGACTGGAGCTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGA  150

seq1  GGCCATGAAGGGATGTTCCTTACTGGCTTGCTTCCCCTGGCTTGCTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGAAGGGATGTTCCTTACTGGCTTGCTTCCCCTGGCTTGCTCAGC  200

seq1  CTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCA  250

seq1  CAAGGGACCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTAGAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTAGAGTTG  300

seq1  GATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTCTTCTGTGATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTCTTCTGTGATAACT  350

seq1  CCAGCTGTATCAAGTTGACACAAAACTAGCCAGTACAGGTGCTATGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTATCAAGTTGACACAAAACTAGCCAGTACAGGTGCTATGATCA  400

seq1  CCTGGCTCACATCTTGCTGGTATGTCATCCCAGCCATATTGGACTGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCACATCTTGCTGGTATGTCATCCCAGCCATATTGGACTGTACC  450

seq1  CTCAAGCCATGAGCCAAATTTAACCCTTACTTTCTTCAATTTCTTGATTC  500
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCAAGCCATGAGCCAAATTTAACCCTTACTTTCTTC-ATTTCTTGATTC  499

seq1  ATACACTGTCTGTCTCAGCTTGAAATTACAGCTGACCTTGACTAGTTCAA  550
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  ATACACTGTCTGTCTCAGCTTGAAA-TACAGCTGACCTTGACTAG-TCAA  547

seq1  ATATTGTAGTGGTTTTGAATAGGAACAGCTGCCATAGACTCATGTGTTTG  600
      |||||||||| |||||| ||||  ||||||| |||||||||||||| |||
seq2  ATATTGTAGT-GTTTTG-ATAG--ACAGCTG-CATAGACTCATGTG-TTG  591

seq1  AATACTTCACCATTAGGAAGTGGCACTATTAGGAAGTATGGTCTTGTTGA  650
       |||||||| ||| ||  ||| |||||| |||  ||||| |||||| |||
seq2  GATACTTCA-CATAAG--AGT-GCACTA-TAG--AGTAT-GTCTTG-TGA  632

seq1  AGTTAAGTATCAGTCTTTTCCTGCTGCCTGTGGAGCTGAGGACTCTTAGC  700
         || ||||||||||||  |||||| |||||||||||| ||||| ||||
seq2  --GTAGGTATCAGTCTTT--CTGCTG-CTGTGGAGCTGA-GACTC-TAGC  675

seq1  TCCTCCAGCATCATGTCTTCCTGCATGACACCATACTCTCC  741
      ||   |||||||||||||| |||||||  ||||||||||||
seq2  TC--TCAGCATCATGTCTT-CTGCATG--ACCATACTCTCC  711