BAC Information

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BAC

Clone NameB6Ng01-047I19
Chromosome5 (Build37)
Map Location 82,179,738 - 82,308,731
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047I19.bB6Ng01-047I19.g
ACCDH872380DH872381
length1,0241,048
definitionDH872380|Mus musculus domesticus DNA, BAC clone: B6Ng01-047I19, 5' end.DH872381|Mus musculus domesticus DNA, BAC clone: B6Ng01-047I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,307,678 - 82,308,731)(82,179,738 - 82,180,814)
sequence
gaattctggttgagataagcctggaaaagacaagttgagcaaagacattc
tgagtaaagggatgtttgctgataatagcctgtaaaaaccaaaggaaaga
aatgaacatcagaaactgacgaggaagaaggtggactagattagtgggag
tgcagagggtgcaagtggatgtcaaggaggggattggtgcctcgagggct
atggttctgatggttattaggatcctgccactgaagccatggttccttat
attcatgggcaactaaatctctacagcttaacatttcaagccagcctgac
tacatactgagtgagaagcatgcctagaatccacagtcaaaccttgtctt
aaataaataaaaaatgctacgacctggtgaggaattaaccatggagaaat
gaaaaattatgccaagctaattagtaatgacatgaatacaagtcacaaca
aaattagttacaaatttgagacagtaatagttgtctcctctgaaatggga
gcaattgagaagatagtgaggaacaagctatgccaacatcttcctgaaga
atataataccagcagtgaggaagaagccttcagcagcaaagcgattttga
atgcccaccacactgcatagtcactgccttccttagcaccaagtgattaa
agatagcacaaaagatggtaaaaatgccaagaacatcagatcaccgggtt
tagtaaggacttttgttttagctttgtgtgaaaatatttttattctcctg
atgtaattactgcattcatctgctaacctaggtctactcctggaagcttc
ttacaatctaatctaaacctagaacgttttcagcctctgagacttacttc
tgataaatttgccctttctagtgtgtctgagctctgatgctgttcactca
gctgtctgctcaaatctctcagtactgatttactgtttccctttcttgct
tgatgatatgctctgctactgaactacttctgcatctatttgatttctgc
tctcctctttctctgctcactcag
gaattctgagattctctttgaacattcattagttggatacatctattttt
caatttataataagaaacgtttactaagtctaaacttagcatgtaaagta
aaaagttattttatattatgttttcttctttatatttaaatacttaaaaa
aaaaccacccctcagaagtaggtggtgcagtgattattgtaccctccttg
gatttccattgaatttctagaagggaaatgtgtgtgcgttcaacttctct
ctagcctccttttagagggtcacaacgtaagaacgtttgtgtaatggcaa
atattatattggactttcatatttaattttgtgttttgttgagtgcttag
atattcacatacagaaatgtgccaggctcttacattcaactcacatggca
accccatgaagaaaggtgtatttccagagataaagggctcttacctgttg
tagctgaaaacatacttagaaggcattcagactgaagcaggctgatttag
aattctttcctttcggttttttcacatgccaacaataataaggaataaca
ttaaggaagaaatgagtttcttcatttgtatcaaaagagctccaaatttc
atactctatttttcttatctcctaccaatttgacttgcttatgtatttct
cagatgaaaatattaactgctaataagtaagacatacccacgcatcactt
aactttcaatatttattctattttcttgtgctcataggctcttaatatat
attatttttgattagttgacatagagttataaaatttgaaataacttaaa
ctgtagagcattttaagcttattttaattcctgggggcggggaattgtct
tctcaatgtctatgggaaacaaatccttggaactggaagtgacaaacagg
tttgagcagccaggtgggggcaggaattgaacccaggtctctgaaagagc
tttagtctgagcatctctcagctctcaagtaagaaatactgtgtcaattt
aagcatgattgaatttattgatcatttataaattcttctattgcagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82307678_82308731
seq2: B6Ng01-047I19.b_43_1066 (reverse)

seq1  CTGAGTGAGCCAGAGAAAGAGGAGGAGCCAGAAAATCAGAATAGATTGCC  50
      ||||||||| ||||||||||||| ||| ||| |||||| |||||||   |
seq2  CTGAGTGAG-CAGAGAAAGAGGA-GAG-CAG-AAATCA-AATAGAT--GC  43

seq1  AGAGTTAGTTTCAGGTTAAGCAGAGCATATCATCAAAGGCCAAGAAAGGG  100
      |||  ||| |||||    ||||||||||||||||||    ||||||||||
seq2  AGAAGTAG-TTCAG---TAGCAGAGCATATCATCAA---GCAAGAAAGGG  86

seq1  AAACCAGGTTAAATCAGTTACCTTGGAGAAGAATTTGAGCCAGACAGCTG  150
      ||| |||  |||||||||   ||  |||    ||||||| ||||||||||
seq2  AAA-CAG--TAAATCAGT--ACTGAGAG----ATTTGAG-CAGACAGCTG  126

seq1  AGTTGAACCAGCCATTCAGAGCTCAGACACAACTAGAAAGGGCAAATTTA  200
      || |||| ||||   ||||||||||||||| |||||||||||||||||||
seq2  AG-TGAA-CAGC--ATCAGAGCTCAGACAC-ACTAGAAAGGGCAAATTTA  171

seq1  TTCAGAAGTAAGTCTCAGAGGCTGAAAACGTTCTAGGTTTAGATTAGATT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCAGAAGTAAGTCTCAGAGGCTGAAAACGTTCTAGGTTTAGATTAGATT  220

seq1  GTAAGAAGCTTCCAGGAGTAGACCTAGGTTAGCAGATGAATGCAGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGCTTCCAGGAGTAGACCTAGGTTAGCAGATGAATGCAGTAATT  270

seq1  ACATCAGGAGAATAAAAATATTTTCACACAAAGCTAAAACAAAAGTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGAGAATAAAAATATTTTCACACAAAGCTAAAACAAAAGTCCTT  320

seq1  ACTAAACCCGGTGATCTGATGTTCTTGGCATTTTTACCATCTTTTGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACCCGGTGATCTGATGTTCTTGGCATTTTTACCATCTTTTGTGCT  370

seq1  ATCCTTAATCACTTGGTGCTAAGGAAGGCAGTGACTATGCAGTGTGGTGG  450
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATCACTTGGTGCTAAGGAAGGCAGTGACTATGCAGTGTGGTGG  420

seq1  GCATTCAAAATCGCTTTGCTGCTGAAGGCTTCTTCCTCACTGCTGGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAAAATCGCTTTGCTGCTGAAGGCTTCTTCCTCACTGCTGGTATT  470

seq1  ATATTCTTCAGGAAGATGTTGGCATAGCTTGTTCCTCACTATCTTCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTCAGGAAGATGTTGGCATAGCTTGTTCCTCACTATCTTCTCAA  520

seq1  TTGCTCCCATTTCAGAGGAGACAACTATTACTGTCTCAAATTTGTAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCATTTCAGAGGAGACAACTATTACTGTCTCAAATTTGTAACTA  570

seq1  ATTTTGTTGTGACTTGTATTCATGTCATTACTAATTAGCTTGGCATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGTGACTTGTATTCATGTCATTACTAATTAGCTTGGCATAATT  620

seq1  TTTCATTTCTCCATGGTTAATTCCTCACCAGGTCGTAGCATTTTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCTCCATGGTTAATTCCTCACCAGGTCGTAGCATTTTTTATTT  670

seq1  ATTTAAGACAAGGTTTGACTGTGGATTCTAGGCATGCTTCTCACTCAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGACAAGGTTTGACTGTGGATTCTAGGCATGCTTCTCACTCAGTA  720

seq1  TGTAGTCAGGCTGGCTTGAAATGTTAAGCTGTAGAGATTTAGTTGCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCAGGCTGGCTTGAAATGTTAAGCTGTAGAGATTTAGTTGCCCAT  770

seq1  GAATATAAGGAACCATGGCTTCAGTGGCAGGATCCTAATAACCATCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAGGAACCATGGCTTCAGTGGCAGGATCCTAATAACCATCAGAA  820

seq1  CCATAGCCCTCGAGGCACCAATCCCCTCCTTGACATCCACTTGCACCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCCTCGAGGCACCAATCCCCTCCTTGACATCCACTTGCACCCTC  870

seq1  TGCACTCCCACTAATCTAGTCCACCTTCTTCCTCGTCAGTTTCTGATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCCCACTAATCTAGTCCACCTTCTTCCTCGTCAGTTTCTGATGTT  920

seq1  CATTTCTTTCCTTTGGTTTTTACAGGCTATTATCAGCAAACATCCCTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTCCTTTGGTTTTTACAGGCTATTATCAGCAAACATCCCTTTA  970

seq1  CTCAGAATGTCTTTGCTCAACTTGTCTTTTCCAGGCTTATCTCAACCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATGTCTTTGCTCAACTTGTCTTTTCCAGGCTTATCTCAACCAGA  1020

seq1  ATTC  1054
      ||||
seq2  ATTC  1024

seq1: chr5_82179738_82180814
seq2: B6Ng01-047I19.g_68_1115

seq1  GAATTCTGAGATTCTCTTTGAACATTCATTAGTTGGATACATCTATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGATTCTCTTTGAACATTCATTAGTTGGATACATCTATTTTT  50

seq1  CAATTTATAATAAGAAACGTTTACTAAGTCTAAACTTAGCATGTAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATAATAAGAAACGTTTACTAAGTCTAAACTTAGCATGTAAAGTA  100

seq1  AAAAGTTATTTTATATTATGTTTTCTTCTTTATATTTAAATACTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATTTTATATTATGTTTTCTTCTTTATATTTAAATACTTAAAAA  150

seq1  AAAACCACCCCTCAGAAGTAGGTGGTGCAGTGATTATTGTACCCTCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACCCCTCAGAAGTAGGTGGTGCAGTGATTATTGTACCCTCCTTG  200

seq1  GATTTCCATTGAATTTCTAGAAGGGAAATGTGTGTGCGTTCAACTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCATTGAATTTCTAGAAGGGAAATGTGTGTGCGTTCAACTTCTCT  250

seq1  CTAGCCTCCTTTTAGAGGGTCACAACGTAAGAACGTTTGTGTAATGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCCTTTTAGAGGGTCACAACGTAAGAACGTTTGTGTAATGGCAA  300

seq1  ATATTATATTGGACTTTCATATTTAATTTTGTGTTTTGTTGAGTGCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATTGGACTTTCATATTTAATTTTGTGTTTTGTTGAGTGCTTAG  350

seq1  ATATTCACATACAGAAATGTGCCAGGCTCTTACATTCAACTCACATGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACATACAGAAATGTGCCAGGCTCTTACATTCAACTCACATGGCA  400

seq1  ACCCCATGAAGAAAGGTGTATTTCCAGAGATAAAGGGCTCTTACCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGAAGAAAGGTGTATTTCCAGAGATAAAGGGCTCTTACCTGTTG  450

seq1  TAGCTGAAAACATACTTAGAAGGCATTCAGACTGAAGCAGGCTGATTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAAACATACTTAGAAGGCATTCAGACTGAAGCAGGCTGATTTAG  500

seq1  AATTCTTTCCTTTCGGTTTTTTCACATGCCAACAATAATAAGGAATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTCCTTTCGGTTTTTTCACATGCCAACAATAATAAGGAATAACA  550

seq1  TTAAGGAAGAAATGAGTTTCTTCATTTGTATCAAAAGAGCTCCAAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAGAAATGAGTTTCTTCATTTGTATCAAAAGAGCTCCAAATTTC  600

seq1  ATACTCTA-TTTTCTTATCTCCTACCAA-TTGACTTGCTTATGTATTTCT  648
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  ATACTCTATTTTTCTTATCTCCTACCAATTTGACTTGCTTATGTATTTCT  650

seq1  CAGATGAAAATATTAACTGCTAATAAGTAAGACATACCCACGCATCACTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAAATATTAACTGCTAATAAGTAAGACATACCCACGCATCACTT  700

seq1  AACTTTTCAATATTTATTCTATTTTCTTGTGCTCATAGGCTCTTAATATA  748
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAC-TTTCAATATTTATTCTATTTTCTTGTGCTCATAGGCTCTTAATATA  749

seq1  TATTATTTTTTGATTAGTTGACATAGAGTTATAAAATTTGAAATAACATT  798
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATTA-TTTTTGATTAGTTGACATAGAGTTATAAAATTTGAAATAAC-TT  797

seq1  AAACTGTAGAGCAATTTTTATGCTTATTTTTAATTCCTGTGTGCTGGTGA  848
      |||||||||||||  ||||| ||||| |||||||||||| | || || ||
seq2  AAACTGTAGAGCA--TTTTAAGCTTA-TTTTAATTCCTGGGGGC-GGGGA  843

seq1  TTTGTCTTCTCATATGTCTATGTGAGAACAGATCCCTGGGAACTGG-AGT  897
       ||||||||||| ||||||||| || |||| || ||| |||||||| |||
seq2  ATTGTCTTCTCA-ATGTCTATGGGA-AACAAAT-CCTTGGAACTGGAAGT  890

seq1  GACAGACAGGTTTGAGCAGCCAGGTGGGTGCTAGGAATTGAACCCAGGTC  947
      |||| ||||||||||||||||||||||| || ||||||||||||||||| 
seq2  GACAAACAGGTTTGAGCAGCCAGGTGGGGGC-AGGAATTGAACCCAGGT-  938

seq1  CTCTGAAAGAGCTTTAGTTCCTGAAGCATCTCTCCAGCCCCTCAAGTATA  997
      ||||||||||||||||||  ||| ||||||||| ||| | |||||||| |
seq2  CTCTGAAAGAGCTTTAGT--CTG-AGCATCTCT-CAG-CTCTCAAGTA-A  982

seq1  GAAATACTGTGGTCAAAATTTTAAGGCATGGATTTGACATTTATTGATTC  1047
      |||||||||| |||||   ||||| |||||   |||| ||||||||| ||
seq2  GAAATACTGT-GTCAA---TTTAA-GCATG--ATTGA-ATTTATTGA-TC  1023

seq1  AATTTTATTAGATTCTTCTTAATTGCAGAT  1077
      |  |||| || ||||||||  |||||||||
seq2  A--TTTA-TAAATTCTTCT--ATTGCAGAT  1048