BAC Information

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BAC

Clone NameB6Ng01-047N17
Chromosome5 (Build37)
Map Location 76,664,047 - 76,860,440
singlet/doubletdoublet
Overlap geneClock, EG665055, Pdcl2, Pafah1b1-ps3, Nmu
Upstream geneLOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Ube2n-ps1
Downstream geneLOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047N17.bB6Ng01-047N17.g
ACCDH872599DH872600
length1,0931,078
definitionDH872599|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N17, 5' end.DH872600|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,664,047 - 76,665,175)(76,859,353 - 76,860,440)
sequence
gaattcctttcctcttgccaatttcagcattcacaccttctttggactaa
ggccatcttacatttctaaacacctttccttctttttttttttttgaggt
tctcatgtagttcaggctgattgtgaatttactatatagttgaggataac
cttgaactcctgatttttctgcttcaacctcccacacacaggtagacact
accatacttggccttttccacttaagctgcatttaaggctccaaatcatg
tgtgtagactaaattaacatggtattttagttatgttattcttttagatc
aagtagcttgttagtacagatatgcaaatactgtcagcatccaatatgtg
taactcaatatatacacagaactaaataaatagcccgtgtgcaaataaat
gaatcaatacagaatatatagttactcaagtcttccaatatccataagga
gggacaaaatgaactagtatatttcatgtttaagattatcatacctgtag
gctgttgttatatataagatgttacagcacagtaagcaagaagatataaa
accatcatttatctgtgattctttctagtaagggtccaccaaaatcattg
caaataacaaaaatgtcactacatattctaaatacgtccagattcactgc
ctttatatgtatttatatatacatatgtataaaactatatttgcttaaat
gcaattatcatttgtaaatgctcaactaaaacaaacaaaaatacctgtga
catgccttgtggaattggtaaatttgcagcttgagacatcgctggctgtg
ttaatgatggaccaactgactgggagtttatggactagaagcaaataaaa
gatgacatgagtgacgctcacactcgtcttcgagtacttccaccacatac
atatgatgtgcttatcactcactgacatcacctcactttgtgagtacaag
tgagctgcccttctactcttctctctctctcttccatgggccagctcagc
cttgatgtacctccatgaaagttgatgactgactgagcactaaactgata
gtagctctcctagcactgtcccaatagaacaagtctagcattt
gaattcacagtcagagagctgctaagtgaagggaagattgaagtgagttt
atgtaaaaggttccaagggctttcttatccttgctgtggggacagcaggg
gtacatttaggccctgcaggcacctctaagagacatgatcctgttgtgac
tgacgctgcgggtctttatcactaacttttctgagtacccatttccggtt
gggctgttactccaccgagtgacacatttctcatcagctataataatatc
aaggtcaagttgaagtgaggtcatactgcctcttcaaagtggcattattt
ctcatataatctgggatgacttatggccactggccactctcagagttatt
atagatggccctgatcacattgttctctttgcctccacttatctgtcatt
gcatccaaaaaggagggaggtagctaacgtggcttaggaacagagctctt
acttagacaccatggagccctgcattccacacttagccctgaagaaataa
ataaataaaacaagaaaagcagccaggcatggtggcgcacacctttgatc
ccagcacttgggaggcagaggcaggcggatttctgagttcgaggtcagcc
tggtctacagagtgagttccaggacagccagagctacacagagaaaccct
gtctcaaaaaacaaacaaacaaacaaacaaaacaaacaaaaaacaagaaa
agcattccattttgttagaacacaatattatccattagtaatctgtgggc
ttttctgctttctttaattaggtttctaattccttcatttattataccca
cctctgctatattattctatggactatgttcttgagaggtgcttggaact
aaagtcagttgggaatttagcttcaagcaaccagagaaagaaagtctagt
tctttaccatggcctgacagctacaggttatttaaaacaaaggaattata
ctattcccagttttactttatcccttttctcagtggccttcgtagttctg
ctgggcctgtctctggagctgggtgccactttctgcctctttcccaaccg
cctatcttaaggatcaatgtctcctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_76664047_76665175
seq2: B6Ng01-047N17.b_44_1136

seq1  GAATTCCTTTCCTCTTGCCAATTTCAGCATTCACACCTTCTTTGGACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCTCTTGCCAATTTCAGCATTCACACCTTCTTTGGACTAA  50

seq1  GGCCATCTTACATTTCTAAACACCTTTCCTTCTTTTTTTTTTTTTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTTACATTTCTAAACACCTTTCCTTCTTTTTTTTTTTTTGAGGT  100

seq1  TCTCATGTAGTTCAGGCTGATTGTGAATTTACTATATAGTTGAGGATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTAGTTCAGGCTGATTGTGAATTTACTATATAGTTGAGGATAAC  150

seq1  CTTGAACTCCTGATTTTTCTGCTTCAACCTCCCACACACAGGTAGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCCTGATTTTTCTGCTTCAACCTCCCACACACAGGTAGACACT  200

seq1  ACCATACTTGGCCTTTTCCACTTAAGCTGCATTTAAGGCTCCAAATCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTTGGCCTTTTCCACTTAAGCTGCATTTAAGGCTCCAAATCATG  250

seq1  TGTGTAGACTAAATTAACATGGTATTTTAGTTATGTTATTCTTTTAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGACTAAATTAACATGGTATTTTAGTTATGTTATTCTTTTAGATC  300

seq1  AAGTAGCTTGTTAGTACAGATATGCAAATACTGTCAGCATCCAATATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTTGTTAGTACAGATATGCAAATACTGTCAGCATCCAATATGTG  350

seq1  TAACTCAATATATACACAGAACTAAATAAATAGCCCGTGTGCAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAATATATACACAGAACTAAATAAATAGCCCGTGTGCAAATAAAT  400

seq1  GAATCAATACAGAATATATAGTTACTCAAGTCTTCCAATATCCATAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATACAGAATATATAGTTACTCAAGTCTTCCAATATCCATAAGGA  450

seq1  GGGACAAAATGAACTAGTATATTTCATGTTTAAGATTATCATACCTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAATGAACTAGTATATTTCATGTTTAAGATTATCATACCTGTAG  500

seq1  GCTGTTGTTATATATAAGATGTTACAGCACAGTAAGCAAGAAGATATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTTATATATAAGATGTTACAGCACAGTAAGCAAGAAGATATAAA  550

seq1  ACCATCATTTATCTGTGATTCTTTCTAGTAAGGGTCCACCAAAATCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATTTATCTGTGATTCTTTCTAGTAAGGGTCCACCAAAATCATTG  600

seq1  CAAATAACAAAAATGTCACTACATATTCTAAATACGTCCAGATTCACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACAAAAATGTCACTACATATTCTAAATACGTCCAGATTCACTGC  650

seq1  CTTTATATGTATTTATATATACATATGTATAAAACTATATTTGCTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGTATTTATATATACATATGTATAAAACTATATTTGCTTAAAT  700

seq1  GCAATTATCATTTGTAAATGCTCAACTAAAACAAACAAAAATACCTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATCATTTGTAAATGCTCAACTAAAACAAACAAAAATACCTGTGA  750

seq1  CATGCCTTGTGGAATTGGTAAATTTGCAGCTTGAGACATCGCTGGCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTGTGGAATTGGTAAATTTGCAGCTTGAGACATCGCTGGCTGTG  800

seq1  TTAATGATGGACCAACTGACTGGGAGTTTATGGACTAGAAGCAAAATAAA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAATGATGGACCAACTGACTGGGAGTTTATGGACTAGAAGC-AAATAAA  849

seq1  AGATGACAATGAGGTGACGCTCACACTCGTCTTCGAGTACTTCCACCACA  900
      ||||||| |||| |||||||||||||||||||||||||||||||||||| 
seq2  AGATGAC-ATGA-GTGACGCTCACACTCGTCTTCGAGTACTTCCACCAC-  896

seq1  ATACAATATGATGTGCTTATCACTCACTGACAATCAACCTCACTTTGTTG  950
      |||| |||||||||||||||||||||||||| ||| ||||||||||| ||
seq2  ATAC-ATATGATGTGCTTATCACTCACTGAC-ATC-ACCTCACTTTG-TG  942

seq1  AGTACAAAGTGAGCTGCCCTTTCTACTCTTCTCTTCTCTTCTCTTTCCCA  1000
      ||||| ||||||||||||| ||||||||||||| |||| ||||||  |||
seq2  AGTAC-AAGTGAGCTGCCC-TTCTACTCTTCTC-TCTC-TCTCTT--CCA  986

seq1  TGGGGCCCAGCTCAGGCCCTTGGATGTACACTCCATGAAAAGTTGAGTGA  1050
      ||||  |||||||||  |||| ||||||| ||||||| |||||||| |||
seq2  TGGG--CCAGCTCAG--CCTT-GATGTAC-CTCCATG-AAAGTTGA-TGA  1028

seq1  CTGAACTGAAGGCAACTAAAACTGAATAGTAGCTCTCACTTAGCACTGTT  1100
      ||| |||||  || ||| |||||| |||||||||||  | ||||||||  
seq2  CTG-ACTGA--GC-ACT-AAACTG-ATAGTAGCTCT--CCTAGCACTG--  1068

seq1  TCACAATTAGAAACAAAAGTCTAGCATTT  1129
      || ||| ||||   | |||||||||||||
seq2  TCCCAA-TAGA---ACAAGTCTAGCATTT  1093

seq1: chr5_76859353_76860440
seq2: B6Ng01-047N17.g_70_1147 (reverse)

seq1  CCCAGGAGACATTGGCTCTCTAGAGTAGGCGCGTGGG-AAGAGGCAGAAA  49
      ||||||||||||||   ||  ||| ||||||  |||| ||||||||||||
seq2  CCCAGGAGACATTGATCCTTAAGA-TAGGCGGTTGGGAAAGAGGCAGAAA  49

seq1  GTGGGCACCCAGCTCCAAGGAGACAGGCCCAGCAGAACTACGAAGGGCCA  99
      || ||||||||||||||  ||||||||||||||||||||||||| |||||
seq2  GT-GGCACCCAGCTCCA--GAGACAGGCCCAGCAGAACTACGAA-GGCCA  95

seq1  CTGAG-AAAGGGATAAAGTAAAAACTGGGGAATAGTTGATATTCCTTTGT  148
      ||||| ||||||||||||| |||||| |||||||||  | ||||||||||
seq2  CTGAGAAAAGGGATAAAGT-AAAACT-GGGAATAGTATA-ATTCCTTTGT  142

seq1  TTTAAATAAACCTGTAGCTGTCAGGCCATGGTTAAGAACTAGACTTTCTT  198
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  TTTAAAT-AACCTGTAGCTGTCAGGCCATGGTAAAGAACTAGACTTTCTT  191

seq1  TCTCTGGTTGCTTGAAGCTAAATTCCCAACTGACTTTAGTTCCAAGCACC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTTGCTTGAAGCTAAATTCCCAACTGACTTTAGTTCCAAGCACC  241

seq1  TCTCAAGAACATAGTCCATAGAATAATATAGCAGAGGTGGGTATAATAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAACATAGTCCATAGAATAATATAGCAGAGGTGGGTATAATAAA  291

seq1  TGAAGGAATTAGAAACCTAATTAAAGAAAGCAGAAAAGCCCACAGATTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAATTAGAAACCTAATTAAAGAAAGCAGAAAAGCCCACAGATTAC  341

seq1  TAATGGATAATATTGTGTTCTAACAAAATGGAATGCTTTTCTTGTTTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATAATATTGTGTTCTAACAAAATGGAATGCTTTTCTTGTTTTTT  391

seq1  TGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTTTTTGAGACAGGGTTTCTC  448
         ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  --GTTTGTTTTGTTTGTTTGTTTGTTTG-TTTTTTGAGACAGGGTTTCTC  438

seq1  TGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCTC  488

seq1  GAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGT  538

seq1  GTGCGCCACCATGCCTGGCTGCTTTTCTTGTTTTATTTATTTATTTCTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACCATGCCTGGCTGCTTTTCTTGTTTTATTTATTTATTTCTTC  588

seq1  AGGGCTAAGTGTGGAATGCAGGGCTCCATGGTGTCTAAGTAAGAGCTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAAGTGTGGAATGCAGGGCTCCATGGTGTCTAAGTAAGAGCTCTG  638

seq1  TTCCTAAGCCACGTTAGCTACCTCCCTCCTTTTTGGATGCAATGACAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGCCACGTTAGCTACCTCCCTCCTTTTTGGATGCAATGACAGAT  688

seq1  AAGTGGAGGCAAAGAGAACAATGTGATCAGGGCCATCTATAATAACTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGCAAAGAGAACAATGTGATCAGGGCCATCTATAATAACTCTG  738

seq1  AGAGTGGCCAGTGGCCATAAGTCATCCCAGATTATATGAGAAATAATGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGCCAGTGGCCATAAGTCATCCCAGATTATATGAGAAATAATGCC  788

seq1  ACTTTGAAGAGGCAGTATGACCTCACTTCAACTTGACCTTGATATTATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAGAGGCAGTATGACCTCACTTCAACTTGACCTTGATATTATTA  838

seq1  TAGCTGATGAGAAATGTGTCACTCGGTGGAGTAACAGCCCAACCGGAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATGAGAAATGTGTCACTCGGTGGAGTAACAGCCCAACCGGAAAT  888

seq1  GGGTACTCAGAAAAGTTAGTGATAAAGACCCGCAGCGTCAGTCACAACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTCAGAAAAGTTAGTGATAAAGACCCGCAGCGTCAGTCACAACAG  938

seq1  GATCATGTCTCTTAGAGGTGCCTGCAGGGCCTAAATGTACCCCTGCTGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTCTCTTAGAGGTGCCTGCAGGGCCTAAATGTACCCCTGCTGTC  988

seq1  CCCACAGCAAGGATAAGAAAGCCCTTGGAACCTTTTACATAAACTCACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCAAGGATAAGAAAGCCCTTGGAACCTTTTACATAAACTCACTT  1038

seq1  CAATCTTCCCTTCACTTAGCAGCTCTCTGACTGTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCCCTTCACTTAGCAGCTCTCTGACTGTGAATTC  1078