BAC Information

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BAC

Clone NameB6Ng01-047P10
Chromosome5 (Build37)
Map Location 110,160,617 - 110,289,715
singlet/doubletdoublet
Overlap geneLOC100041734, LOC100042749, LOC667198, 4930522L14Rik
Upstream geneLOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831
Downstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047P10.bB6Ng01-047P10.g
ACCDH872679DH872680
length1,018934
definitionDH872679|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P10, 5' end.DH872680|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,288,685 - 110,289,715)(110,160,617 - 110,161,151)
sequence
gaattctctctttttttaagaagggttttgcatttttattcttttttttt
ttttttttaatgtacagtgttttgcctgcacgccagaagagggtgccgag
atcacattaaagatggttgtcagccaccatgtggttgccggaattgaact
cagagaccaatcacagctcatgctttgcatgatgcagaagaacaaaagag
ggaagcctttaaggaaaacctgcaggttttctttccctgcccatcattaa
catagccaaggacactctggtcactgtgtgttcttcctgtgaaccttcca
aattctgacgaagcttggaattgaacatttcaaaaacaagtagtcacata
acagggatctctctggattgcttcaatgtgtcagcagcagatcccatgtt
ctgatgctctgttgaatggcaaggagatggacatggaggacagtctagaa
agattgccatatgaatcttaaagaaagttatcttgactctatccaatata
tgtctgtgtttaaataaacactagagggaagttccttggaatcctctctt
acaactcataatgcaatggggttggtcctctctggccaaagatcactgaa
tctgttagagcatctcccggagtcggagtcctcatctggcttgagaaggc
atttatgatgctttaagtactagtcctcttggtcatttttgctgggaatt
gaacttaggacctctgggaaagtagccagtgcccttaatctatgaccatg
tctccagcccctggtcatgatttcctaataattcaacatgtcttcttaga
atcaacacggtattgaatattgcaaacactaagttgatttatggtgtaag
gaggatgtgtctgggttttatgctatttctactcattttacataggagac
ctggccatcccagatgtgatattgatgtgggggtctggaccaagtccatg
tatacagagactgactgtatgctgactgttactacacttctagaagtgtc
agtgatatcagatcgtgg
gaattcattacctgctcatcaggtaacattactaagtgtcgcgtctgctc
tcgaccagcaagaacgacacaaccaccagtccttctaacagcagtttatt
cagcaaacttccgtcttcatctctctcgattcaactttttctttctcaac
tttatctctctctctaacccgggcctctcactcttatatactctcagccc
tcatccactcttggcaggccatgtcacctcaccaggcacacagcttcagc
taatcagggcagcaggggcatgtctacaccaaaatggattcaccagcatc
ctggtgcacctatgcagctctcacggtggttgtggcttattttcaggggt
ggcttattttcaggaagtcaggtgcaagtcataagacttagctgcagtcc
ctggcgccttcttgggactgctgccacacccgctcctcacatctccccct
ttttttcttttttgtctggctttgattgccccctgcagcaatgcccctta
ctcatcctcaggagacaaacagcattggtttgatccctgtcttaggttgg
tgacatgcccagggagtcttatccgtcactgactacttctctatcatgcc
aagccacagttggggagattgtcctgtttgcatgcagcaggtgcatcaga
agaccaggatgctgattaatctatggccagatcttgattgctgcaagcca
gcctcttgggtgaaggtagaggtctgatccccagtgtgcaagcatagggg
ccctacacaaaaccatcccttgggctcatcacccagagaggtcttggcca
gctcccgtgtcgtttttcctgggggaaagggaactaggacactgaacctt
cacgcaatcagacgtgccttccacaggatgccaacagcaagctatcctct
gtgcagtgctagcctcgcaacccatggcataacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110288685_110289715
seq2: B6Ng01-047P10.b_42_1059 (reverse)

seq1  CCACGATTCTGAATATCACCTTGACACTTTCTAGAAGGTGTAGTTAACAG  50
      |||||| |||| |||||||  |||||| |||||||| |||||| ||||||
seq2  CCACGA-TCTG-ATATCAC--TGACAC-TTCTAGAA-GTGTAG-TAACAG  43

seq1  TCAGCATACAGTCAGTTCTCTGTATACATGGGACTTGGTTCCAGACCCCC  100
      ||||||||||||||| ||||||||||||| |||||||| |||||||||||
seq2  TCAGCATACAGTCAG-TCTCTGTATACAT-GGACTTGG-TCCAGACCCCC  90

seq1  ACATCAATATCACATCTTGGGATGGCCAGGTCTCCTATGTAAAATTGAGT  150
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  ACATCAATATCACATC-TGGGATGGCCAGGTCTCCTATGTAAAA-TGAGT  138

seq1  AGAAATAGCATAAAACCCAGACACATCCTCCTTACACCATAAATCAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGCATAAAACCCAGACACATCCTCCTTACACCATAAATCAACTT  188

seq1  AGTGTTTTGCAATATTCAATACCGTGTTGATTCTAAGAAGACATGTTGAA  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTG-TTTGCAATATTCAATACCGTGTTGATTCTAAGAAGACATGTTGAA  237

seq1  TTATTAGGAAATCATGACCAGGGGCTGGAGACATGGTCATAGATTAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGAAATCATGACCAGGGGCTGGAGACATGGTCATAGATTAAGGG  287

seq1  CACTGGCTACTTTCCCAGAGGTCCTAAGTTCAATTCCCAGCAAAAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTACTTTCCCAGAGGTCCTAAGTTCAATTCCCAGCAAAAATGAC  337

seq1  CAAGAGGACTAGTACTTAAAGCATCATAAATGCCTTCTCAAGCCAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGACTAGTACTTAAAGCATCATAAATGCCTTCTCAAGCCAGATGA  387

seq1  GGACTCCGACTCCGGGAGATGCTCTAACAGATTCAGTGATCTTTGGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCGACTCCGGGAGATGCTCTAACAGATTCAGTGATCTTTGGCCAG  437

seq1  AGAGGACCAACCCCATTGCATTATGAGTTGTAAGAGAGGATTCCAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCAACCCCATTGCATTATGAGTTGTAAGAGAGGATTCCAAGGAA  487

seq1  CTTCCCTCTAGTGTTTATTTAAACACAGACATATATTGGATAGAGTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTAGTGTTTATTTAAACACAGACATATATTGGATAGAGTCAAG  537

seq1  ATAACTTTCTTTAAGATTCATATGGCAATCTTTCTAGACTGTCCTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTCTTTAAGATTCATATGGCAATCTTTCTAGACTGTCCTCCATG  587

seq1  TCCATCTCCTTGCCATTCAACAGAGCATCAGAACATGGGATCTGCTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCTTGCCATTCAACAGAGCATCAGAACATGGGATCTGCTGCTG  637

seq1  ACACATTGAAGCAATCCAGAGAGATCCCTGTTATGTGACTACTTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGAAGCAATCCAGAGAGATCCCTGTTATGTGACTACTTGTTTTT  687

seq1  GAAATGTTCAATTCCAAGCTTCGTCAGAATTTGGAAGGTTCACAGGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTCAATTCCAAGCTTCGTCAGAATTTGGAAGGTTCACAGGAAGA  737

seq1  ACACACAGTGACCAGAGTGTCCTTGGCTATGTTAATGATGGGCAGGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGTGACCAGAGTGTCCTTGGCTATGTTAATGATGGGCAGGGAAA  787

seq1  GAAAACCTGCAGGTTTTCCTTAAAGGCTTCCCTCTTTTGTTCTTCTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGCAGGTTTTCCTTAAAGGCTTCCCTCTTTTGTTCTTCTGCAT  837

seq1  CATGCAAAGCATGAGCTGTGATTGGTCTCTGAGTTCAATTCCGGCAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAGCATGAGCTGTGATTGGTCTCTGAGTTCAATTCCGGCAACCA  887

seq1  CATGGTGGCTGACAACCATCTTTAATGTGATCTCGGCACCCTCTTCTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTGACAACCATCTTTAATGTGATCTCGGCACCCTCTTCTGGC  937

seq1  GTGCAGGCAAAACACTGTACATTAAAAAAAAAAAAAAAAAGAATAAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCAAAACACTGTACATTAAAAAAAAAAAAAAAAAGAATAAAAAT  987

seq1  GCAAAACCCTTCTTAAAAAAAGAGAGAATTC  1031
      |||||||||||||||||||||||||||||||
seq2  GCAAAACCCTTCTTAAAAAAAGAGAGAATTC  1018

seq1: chr5_110160617_110161151
seq2: B6Ng01-047P10.g_68_602

seq1  GAATTCATTACCTGCTCATCAGGTAACATTACTAAGTGTCGCGTCTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCTGCTCATCAGGTAACATTACTAAGTGTCGCGTCTGCTC  50

seq1  TCGACCAGCAAGAACGACACAACCACCAGTCCTTCTAACAGCAGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCAGCAAGAACGACACAACCACCAGTCCTTCTAACAGCAGTTTATT  100

seq1  CAGCAAACTTCCGTCTTCATCTCTCTCGATTCAACTTTTTCTTTCTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACTTCCGTCTTCATCTCTCTCGATTCAACTTTTTCTTTCTCAAC  150

seq1  TTTATCTCTCTCTCTAACCCGGGCCTCTCACTCTTATATACTCTCAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCTCTCTCTAACCCGGGCCTCTCACTCTTATATACTCTCAGCCC  200

seq1  TCATCCACTCTTGGCAGGCCATGTCACCTCACCAGGCACACAGCTTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACTCTTGGCAGGCCATGTCACCTCACCAGGCACACAGCTTCAGC  250

seq1  TAATCAGGGCAGCAGGGGCATGTCTACACCAAAATGGATTCACCAGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGGCAGCAGGGGCATGTCTACACCAAAATGGATTCACCAGCATC  300

seq1  CTGGTGCACCTATGCAGCTCTCACGGTGGTTGTGGCTTATTTTCAGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCACCTATGCAGCTCTCACGGTGGTTGTGGCTTATTTTCAGGGGT  350

seq1  GGCTTATTTTCAGGAAGTCAGGTGCAAGTCATAAGACTTAGCTGCAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTTTCAGGAAGTCAGGTGCAAGTCATAAGACTTAGCTGCAGTCC  400

seq1  CTGGCGCCTTCTTGGGACTGCTGCCACACCCGCTCCTCACATCTCCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCCTTCTTGGGACTGCTGCCACACCCGCTCCTCACATCTCCCCCT  450

seq1  TTTTTTCTTTTTTGTCTGGCTTTGATTGCCCCCTGCAGCAATGCCCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTTGTCTGGCTTTGATTGCCCCCTGCAGCAATGCCCCTTA  500

seq1  CTCATCCTCAGGAGACAAACAGCATTGGTTTGATC  535
      |||||||||||||||||||||||||||||||||||
seq2  CTCATCCTCAGGAGACAAACAGCATTGGTTTGATC  535