BAC Information

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BAC

Clone NameB6Ng01-048D14
Chromosome5 (Build37)
Map Location 21,309,166 - 21,427,463
singlet/doubletdoublet
Overlap genePsmc2, Slc26a5, Reln
Upstream genePhtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2
Downstream geneDnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048D14.bB6Ng01-048D14.g
ACCDH872845DH872846
length4241,110
definitionDH872845|Mus musculus domesticus DNA, BAC clone: B6Ng01-048D14, 5' end.DH872846|Mus musculus domesticus DNA, BAC clone: B6Ng01-048D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,427,034 - 21,427,463)(21,309,166 - 21,310,296)
sequence
taatgtagtctctgtgactaactacataatacaaagcttagtttttctca
aatactgtctaggcctccaaaagtattcatccagtcagagtggtttcctt
cctggtgaagaagaaaacagggaattccttgaaatagttctgctatgtgt
attgaaaaaaactctaatgatcttttgataacacagtacctatggttaat
gatatactattgagctggacatggtggcttctacctataatcacaatcct
caggaggcagagacaggaggataaccatgtgtttaagaccaccctgggct
acaccattcgttccaagacaaacggctatagaataaaaccttgtctccaa
aaaacaaaaacaaaaataaacaaacaaagaaaaacagaagatgatggatg
gatggatggatggatggatggatg
gaattccttaatttttagggtcgaacgcacatctttaagattcacgctcg
ctcaatgagtgtggaaagagacattcgatttgagctgttggcccgcctgt
gtccaaacagtactggtgagtggcaggcggactccctggtttcccgtcgg
tcttcagggctgccgtaattaacagtcgtgttttctctctgtcggacagg
agcggagattagaagtgtttgcacagaagctggtatgtttgcaatccgag
cacggagaaaaattgctacagagaaggacttcttagaagctgtaaataag
gtcatcaagtcttacgccaaattcagcgctactccccgctacatgacata
caattgagccccagggctctgagtgaaagaacttcctgtgcttttgtaac
ttgttgccaccgcacaaaaataaaagatttaaaaactgtgtcagtgcttc
cagatctctgttccctgctgtgcagtgttagtcagcgtcccagcgcactt
attctggaggactgatgtaagtactcttagcctaccgtagatccttagga
ggtgcagaaagtccacgtgtcaggctccattacccgttctgacctctgct
accatcaaagcacttcatatggtgtgtggcacgtgcatctcaacggggtt
tcatatcatatggtgtgtggcatgtgcatcacgatggggttttcccatag
taaggggtttttgaagtaaggttttggccagactggattgttttgtttgt
ggtacacgcactgagtttttgaatgctaggcaaacaccctaccactgaac
aatataccccctgcgtggaccgaatggtttttaaagttgaagcattcatt
gtccgtttcccttttgaccagttccaaatcatctagaattggtgatttaa
tgaacagtgaaatgtcagcaggtaaagagggtaaatgtgagatttaggaa
tttcagattgtgtaatttagagaaaattgcttcttatgtaaattctgata
aactcacctctactttaattactttaatgtagatgtttttgaggcaaggt
ccttctaggagcctgctgactggaactactaggtagaataaggcgtcttg
aactcagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21427034_21427463
seq2: B6Ng01-048D14.b_46_475 (reverse)

seq1  CATCCATCCATCCATCCATCCATCCATCCATCATCTTCTGTTTTTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCATCCATCCATCCATCATCTTCTGTTTTTCTTTG  50

seq1  TTTGTTTATTTTTGTTTTTGTTTTTTGGAGACAAGGTTTTATTCTATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTTTTGTTTTTGTTTTTTGGAGACAAGGTTTTATTCTATAGC  100

seq1  CGTTTGTCTTGGAACGAATGGTGTAGCCCAGGGTGGTCTTAAACACATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTCTTGGAACGAATGGTGTAGCCCAGGGTGGTCTTAAACACATGG  150

seq1  TTATCCTCCTGTCTCTGCCTCCTGAGGATTGTGATTATAGGTAGAAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCCTGTCTCTGCCTCCTGAGGATTGTGATTATAGGTAGAAGCCA  200

seq1  CCATGTCCAGCTCAATAGTATATCATTAACCATAGGTACTGTGTTATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCAGCTCAATAGTATATCATTAACCATAGGTACTGTGTTATCAA  250

seq1  AAGATCATTAGAGTTTTTTTCAATACACATAGCAGAACTATTTCAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATTAGAGTTTTTTTCAATACACATAGCAGAACTATTTCAAGGAA  300

seq1  TTCCCTGTTTTCTTCTTCACCAGGAAGGAAACCACTCTGACTGGATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTTTTCTTCTTCACCAGGAAGGAAACCACTCTGACTGGATGAAT  350

seq1  ACTTTTGGAGGCCTAGACAGTATTTGAGAAAAACTAAGCTTTGTATTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGAGGCCTAGACAGTATTTGAGAAAAACTAAGCTTTGTATTATG  400

seq1  TAGTTAGTCACAGAGACTACATTAGAATTC  430
      ||||||||||||||||||||||||||||||
seq2  TAGTTAGTCACAGAGACTACATTAGAATTC  430

seq1: chr5_21309166_21310296
seq2: B6Ng01-048D14.g_67_1176

seq1  GAATTCCTTAATTTTTAGGGTCGAACGCACATCTTTAAGATTCACGCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATTTTTAGGGTCGAACGCACATCTTTAAGATTCACGCTCG  50

seq1  CTCAATGAGTGTGGAAAGAGACATTCGATTTGAGCTGTTGGCCCGCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAGTGTGGAAAGAGACATTCGATTTGAGCTGTTGGCCCGCCTGT  100

seq1  GTCCAAACAGTACTGGTGAGTGGCAGGCGGACTCCCTGGTTTCCCGTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACAGTACTGGTGAGTGGCAGGCGGACTCCCTGGTTTCCCGTCGG  150

seq1  TCTTCAGGGCTGCCGTAATTAACAGTCGTGTTTTCTCTCTGTCGGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGGCTGCCGTAATTAACAGTCGTGTTTTCTCTCTGTCGGACAGG  200

seq1  AGCGGAGATTAGAAGTGTTTGCACAGAAGCTGGTATGTTTGCAATCCGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAGATTAGAAGTGTTTGCACAGAAGCTGGTATGTTTGCAATCCGAG  250

seq1  CACGGAGAAAAATTGCTACAGAGAAGGACTTCTTAGAAGCTGTAAATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGAAAAATTGCTACAGAGAAGGACTTCTTAGAAGCTGTAAATAAG  300

seq1  GTCATCAAGTCTTACGCCAAATTCAGCGCTACTCCCCGCTACATGACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAGTCTTACGCCAAATTCAGCGCTACTCCCCGCTACATGACATA  350

seq1  CAATTGAGCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAGCCCCAGGGCTCTGAGTGAAAGAACTTCCTGTGCTTTTGTAAC  400

seq1  TTGTTGCCACCGCACAAAAATAAAAGATTTAAAAACTGTGTCAGTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCACCGCACAAAAATAAAAGATTTAAAAACTGTGTCAGTGCTTC  450

seq1  CAGATCTCTGTTCCCTGCTGTGCAGTGTTAGTCAGCGTCCCAGCGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGTTCCCTGCTGTGCAGTGTTAGTCAGCGTCCCAGCGCACTT  500

seq1  ATTCTGGAGGACTGATGTAAGTACTCTTAGCCTACCGTAGATCCTTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAGGACTGATGTAAGTACTCTTAGCCTACCGTAGATCCTTAGGA  550

seq1  GGTGCAGAAAGTCCACGTGTCAGGCTCCATTACCCGTTCTGACCTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGAAAGTCCACGTGTCAGGCTCCATTACCCGTTCTGACCTCTGCT  600

seq1  ACCATCAAAGCACTTCATATGGTGTGTGGCACGTGCATCTCAACGGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAAAGCACTTCATATGGTGTGTGGCACGTGCATCTCAACGGGGTT  650

seq1  TCATATCATATGGTGTGTGGCATGTGCATCACGATGGGGTTTTCCCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCATATGGTGTGTGGCATGTGCATCACGATGGGGTTTTCCCATAG  700

seq1  TAAGGGGTTTTTGAAGTAAGGTTTTGGCCAGACTGGATTGTTTTGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGTTTTTGAAGTAAGGTTTTGGCCAGACTGGATTGTTTTGTTTGT  750

seq1  GGTACACGCACTGAGTTTTTGAATGCTAGGCAAACACCCTACCACTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACGCACTGAGTTTTTGAATGCTAGGCAAACACCCTACCACTGAAC  800

seq1  AATATACCCCCTGCGTGGACCGAATGGTTTTTAAAGTTGAAGCATTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCCCCTGCGTGGACCGAATGGTTTTTAAAGTTGAAGCATTCATT  850

seq1  GTCCG-TTCCCTTTTGACCAGTTCCAAATCAGTCTAGAATTGGTGATTTT  899
      ||||| ||||||||||||||||||||||||| |||||||||||||| |||
seq2  GTCCGTTTCCCTTTTGACCAGTTCCAAATCA-TCTAGAATTGGTGA-TTT  898

seq1  AATGAACAGTGAAATGTCAGCAGGTAAAGAGGGTTAAATGTGAGGATTTA  949
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  AATGAACAGTGAAATGTCAGCAGGTAAAGAGGG-TAAATGTGA-GATTTA  946

seq1  GGAAATTCAGAATTGTGTAAATTTAGAGAAAAATTGCTTCCTTAATGGTA  999
      |||| ||||| ||||||| ||||||||| |||||||||||  | |||   
seq2  GGAATTTCAG-ATTGTGT-AATTTAGAG-AAAATTGCTTC--TTATG--T  989

seq1  AAATTCTGATTAAACTCACCTCTACTTTAATTACTTTTAATTGGTTAGAT  1049
      ||||||||| |||||||||||||||||||||||| ||||||    |||||
seq2  AAATTCTGA-TAAACTCACCTCTACTTTAATTAC-TTTAAT---GTAGAT  1034

seq1  GTATTTTGAGGCAGGGTCCTTCTAGGAGCCCTGGCTGACTTGGAACTCAC  1099
      || |||||||||| ||||||||||||||||   |||||| ||||||| ||
seq2  GT-TTTTGAGGCAAGGTCCTTCTAGGAGCC--TGCTGAC-TGGAACT-AC  1079

seq1  CATGTAG-ATTAGGCTGGTCTTGAACTCAGACC  1131
       | |||| || ||||  ||||||||||||||||
seq2  TAGGTAGAATAAGGC--GTCTTGAACTCAGACC  1110