BAC Information

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BAC

Clone NameB6Ng01-048E18
Chromosome5 (Build37)
Map Location 89,091,240 - 89,220,946
singlet/doubletdoublet
Overlap geneGrsf1, Mobkl1a, Dck
Upstream geneCsn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3
Downstream geneMkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105, Adamts3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048E18.bB6Ng01-048E18.g
ACCDH872897DH872898
length315409
definitionDH872897|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E18, 5' end.DH872898|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,220,632 - 89,220,946)(89,091,240 - 89,091,748)
sequence
ttcattagtaggcttcctttttattccattcaggactctagcaaactaga
tgaggctgccaacatccaagatagagctttctccccttaaataaccatct
caggaggggttggggaaatggctcaacagttaagaacatttagctctcaa
cagcagtaagccgggagttcaagtgtctttaactccagctccggtgatct
gatgccctcttctggccaccccaggcaactgcatgctcataacaaaccac
aaacgtgaaagcttacatgctttttaaaataatgtttataggactgagct
tggggggtgggggtg
tgggaacatttcggaggatatagaaatgctagaaccacacagatgggctg
ttggttgatggtggttggtcacgggttgtttgaggggttgtttgtgtctt
acattagttgtagttgaacaagaaacaagaagaaagagtcagggatcttt
ctcttcaacctagtgttaagggggttgagaggttggagaagagtggaaga
aagaatacacaaagcagccaaaagtccagttacagagaatggtttctacc
atattagcaattagtgaggtgattattaattactgtaagtctttcaatgt
tatagcttaattaccttattttctggggtctgttgaagtcttattttcct
ttatgacttgaatttaggaacagctcaatatacctatgttctgaatattt
ttaaatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89220632_89220946
seq2: B6Ng01-048E18.b_50_364 (reverse)

seq1  CACCCCCACCCCCCAAGCTCAGTCCTATAAACATTATTTTAAAAAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACCCCCCAAGCTCAGTCCTATAAACATTATTTTAAAAAGCATG  50

seq1  TAAGCTTTCACGTTTGTGGTTTGTTATGAGCATGCAGTTGCCTGGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTCACGTTTGTGGTTTGTTATGAGCATGCAGTTGCCTGGGGTGG  100

seq1  CCAGAAGAGGGCATCAGATCACCGGAGCTGGAGTTAAAGACACTTGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGCATCAGATCACCGGAGCTGGAGTTAAAGACACTTGAACT  150

seq1  CCCGGCTTACTGCTGTTGAGAGCTAAATGTTCTTAACTGTTGAGCCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCTTACTGCTGTTGAGAGCTAAATGTTCTTAACTGTTGAGCCATTT  200

seq1  CCCCAACCCCTCCTGAGATGGTTATTTAAGGGGAGAAAGCTCTATCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCCCTCCTGAGATGGTTATTTAAGGGGAGAAAGCTCTATCTTGG  250

seq1  ATGTTGGCAGCCTCATCTAGTTTGCTAGAGTCCTGAATGGAATAAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCAGCCTCATCTAGTTTGCTAGAGTCCTGAATGGAATAAAAAGG  300

seq1  AAGCCTACTAATGAA  315
      |||||||||||||||
seq2  AAGCCTACTAATGAA  315

seq1: chr5_89091240_89091748
seq2: B6Ng01-048E18.g_67_481

seq1  GAATTCTGGGAACATTTCGGAGGATATAGAAATGCTAGAACCACACAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAACATTTCGGAGGATATAGAAATGCTAGAACCACACAGAT  50

seq1  GGGCTGTTGGTTGATGGTGGTTGGTCACGGGTTGTTTGAGGGGTTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTGGTTGATGGTGGTTGGTCACGGGTTGTTTGAGGGGTTGTTTG  100

seq1  TGTCTTACATTAGTTGTAGTTGAACAAGAAACAAGAAGAAAGAGTCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACATTAGTTGTAGTTGAACAAGAAACAAGAAGAAAGAGTCAGGG  150

seq1  ATCTTTCTCTTCAACCTAGTGTTAAGGGGGTTGAGAGGTTGGAGAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCTTCAACCTAGTGTTAAGGGGGTTGAGAGGTTGGAGAAGAGT  200

seq1  GGAAGAAAGAATACACAAAGCAGCCAAAAGTCCAGTTACAGAGAATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAATACACAAAGCAGCCAAAAGTCCAGTTACAGAGAATGGTT  250

seq1  TCTACCATATTAGCAATTAGTGAGGTGATTATTAATTACTGTAAGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATATTAGCAATTAGTGAGGTGATTATTAATTACTGTAAGTCTTT  300

seq1  CAATGTTATAGCTTAATTACCTTATTTTCTGGGGTCTGTTGAAGTCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTATAGCTTAATTACCTTATTTTCTGGGGTCTGTTGAAGTCTTAT  350

seq1  TTTCCTTTAGGACATGAATTTAGGAACAGCTCAATATACCTATGTTCTGA  400
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTATGACTTGAATTTAGGAACAGCTCAATATACCTATGTTCTGA  400

seq1  ATATTTTAAAAAAAAGTTAGTTTTACAAAGTCTGAAAACCATTAAAGCCC  450
      ||||||| |||  ||                                   
seq2  ATATTTTTAAATCAA-----------------------------------  415

seq1  CTTTTAATTACACTTCAGACAGCAGCACAGGTCCTTTAACCTTCCTCTAA  500
                                                        
seq2  --------------------------------------------------  415

seq1  CTAAATCAA  509
               
seq2  ---------  415