BAC Information

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BAC

Clone NameB6Ng01-048P18
Chromosome5 (Build37)
Map Location 41,465,787 - 41,577,874
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048P18.bB6Ng01-048P18.g
ACCDH873379DH873380
length7171,042
definitionDH873379|Mus musculus domesticus DNA, BAC clone: B6Ng01-048P18, 5' end.DH873380|Mus musculus domesticus DNA, BAC clone: B6Ng01-048P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,465,787 - 41,466,503)(41,576,805 - 41,577,874)
sequence
gaattcactctgtctaaaagagctgcaactaagcagatgaacatttctgg
aaatatttgccactgggatgaccccatggcatcattcgtgttgactacac
ctgtagaagctttgttattactaaatgaagccatctggagtcagtcatca
tagtccatccaaatgaccctggagtactcactgccaggagaaagtctgca
gttaccaaagtcatcctacaaaactgacatggtaaactatactaatacat
gaataattcttaatgtaggagcatggtaggtatggaggaacaaagtaaga
gagctcctccagggatacacactagctttatatctctagactgtgctggt
taccatttgtcaagttgacaccaactagagtaatctggaagagaaagtaa
caactgagtaggaaaattaagagagggaaaaagtttgaaaacacagagag
agagagagggagggagggagagagagagagagagacagagagacagagag
acagagagagacatagacaggcagagagacagaaaaacaaacagagaatg
tcaattgaggagttgcctccaccagattgccctaagtggtcatctctagc
atattttcttaattgctgataaacgtgaaagggcctagcccattgggaca
gtccaacccttgggagggctagggttatatgaggaaggtatttgaatagt
caaggggaatgaggaca
gaattcatttcagcgagcaaaacagttacttctgctctgtacgtatagag
tttgaaaccatgtgagatatttttagagtggtagtgaagcaggaagtgca
ctcactcatgtttggaggcaagcagaagccttgaagagatgtgttctgta
ggagcaagtccataaagtgacagtgagccaccaggatggaacctagagga
atatcacattttattagatgatcaaagcatgaaagacacttcagggaaga
gttattaggagatgattccaccgtacaaaatgtgtgcctgtcagatactt
gcaagcaactcagacaagggaagagctgcggatacccattcacaggtttc
ataatattgaagttcactgggtacatgctgagaggtgaagggagactgga
gttcctaaacctagaaagaaggttcggtgtgttcttacgaaaactaggat
ccttatattctaatcaatttttcttcaggaaagattgggctaatcaatat
ggggtcaactgagtatatctgacaattaaaaagcttagggaagagtagca
gcagcaatggaaaatagcccgctcctaccaaaagaatcttttgtttgtgg
attgaaacttagcaaagaaaggaaacataaaaatgggttacgccattctt
cttctttcacagaacagtggcataaaatctattcagaggcccttgtagac
gggtggtacaagcttcttcactgtcccctcaggcttagggaggcagcagg
acagacttttatgcattcttcaaagcacagggacctgcaagactgatttt
ttttttttcctggagtgtccagtatccacggaacagagttcattgtgaag
gacctgtgtgagttgcagagtacagagctcagaattgagaagcacaggct
tgtctcagacttctcagactcacaggatcctcctacatcatatctgtcat
gctgtgcttgggagaggcctgggcatgctgcattgctgcatgctcactaa
tgataagaaataacccttctggtgagtctgactgttacatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41465787_41466503
seq2: B6Ng01-048P18.b_46_762

seq1  GAATTCACTCTGTCTAAAAGAGCTGCAACTAAGCAGATGAACATTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTCTAAAAGAGCTGCAACTAAGCAGATGAACATTTCTGG  50

seq1  AAATATTTGCCACTGGGATGACCCCATGGCATCATTCGTGTTGACTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGCCACTGGGATGACCCCATGGCATCATTCGTGTTGACTACAC  100

seq1  CTGTAGAAGCTTTGTTATTACTAAATGAAGCCATCTGGAGTCAGTCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAGCTTTGTTATTACTAAATGAAGCCATCTGGAGTCAGTCATCA  150

seq1  TAGTCCATCCAAATGACCCTGGAGTACTCACTGCCAGGAGAAAGTCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATCCAAATGACCCTGGAGTACTCACTGCCAGGAGAAAGTCTGCA  200

seq1  GTTACCAAAGTCATCCTACAAAACTGACATGGTAAACTATACTAATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAAAGTCATCCTACAAAACTGACATGGTAAACTATACTAATACAT  250

seq1  GAATAATTCTTAATGTAGGAGCATGGTAGGTATGGAGGAACAAAGTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTCTTAATGTAGGAGCATGGTAGGTATGGAGGAACAAAGTAAGA  300

seq1  GAGCTCCTCCAGGGATACACACTAGCTTTATATCTCTAGACTGTGCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTCCAGGGATACACACTAGCTTTATATCTCTAGACTGTGCTGGT  350

seq1  TACCATTTGTCAAGTTGACACCAACTAGAGTAATCTGGAAGAGAAAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTGTCAAGTTGACACCAACTAGAGTAATCTGGAAGAGAAAGTAA  400

seq1  CAACTGAGTAGGAAAATTAAGAGAGGGAAAAAGTTTGAAAACACAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGTAGGAAAATTAAGAGAGGGAAAAAGTTTGAAAACACAGAGAG  450

seq1  AGAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAG  500

seq1  ACAGAGAGAGACAGAGACAGGCAGAGAGACAGAAAAACAAACAGAGAATG  550
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGACATAGACAGGCAGAGAGACAGAAAAACAAACAGAGAATG  550

seq1  TCAATTGAGGAGTTGCCTCCACCAGATTGCCCTAAGTGGTCATCTCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGAGGAGTTGCCTCCACCAGATTGCCCTAAGTGGTCATCTCTAGC  600

seq1  ATATTTTCTTAATTGCTGATAAACGTGAAAGGGCCTAGCCCATT-GGACA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATTTTCTTAATTGCTGATAAACGTGAAAGGGCCTAGCCCATTGGGACA  650

seq1  GTTCCAACCCTTGGGAGGGCTAGGGTTATATGAGGAAGGTATCTGAATAG  699
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  G-TCCAACCCTTGGGAGGGCTAGGGTTATATGAGGAAGGTATTTGAATAG  699

seq1  TCAAGGGGAAGGAGGACA  717
      |||||||||| |||||||
seq2  TCAAGGGGAATGAGGACA  717

seq1: chr5_41576805_41577874
seq2: B6Ng01-048P18.g_67_1108 (reverse)

seq1  CCATGTAACAGTCAGACCTCCACCCCAGAGGTGTTTATTTTCCTTTAATC  50
      ||||||||||||||||    | | ||||| | | ||||||  |||  |||
seq2  CCATGTAACAGTCAGA----CTCACCAGAAG-GGTTATTT--CTT--ATC  41

seq1  ATTTAGTGAAGCAATGCAGACATGCCAGCATGCCCAGGGCCCTCTCCCAA  100
      | |||||| ||| ||||||  ||| |||||||||||||  |||||||| |
seq2  A-TTAGTG-AGC-ATGCAGCAATG-CAGCATGCCCAGG--CCTCTCCC-A  84

seq1  AGCACCAGCATGACCAAGATATGGATGTAGGGAGGATCCCCTGGTGAGTC  150
      |||| |||||||||  |||||| |||||| |||||||||    |||||||
seq2  AGCA-CAGCATGAC--AGATAT-GATGTA-GGAGGATCC---TGTGAGTC  126

seq1  TGGAGAAGTCTGAGACAGCCCTGTGCTTTCTCAATTCTGAGCTCTGTACT  200
      | |||||||||||||||  ||||||| |||||||||||||||||||||||
seq2  T-GAGAAGTCTGAGACAAGCCTGTGC-TTCTCAATTCTGAGCTCTGTACT  174

seq1  CTGCAACTCACCACAGGTCCTTCACAATGAACTCTGTTCCGTGGATACTG  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTCA-CACAGGTCCTTCACAATGAACTCTGTTCCGTGGATACTG  223

seq1  GACACTCCAGGAAAAAAAAAAAATCAGTCTTGCAGGTCCCTGTGCTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCAGGAAAAAAAAAAAATCAGTCTTGCAGGTCCCTGTGCTTTGA  273

seq1  AGAATGCATAAAAGTCTGTCCTGCTGCCTCCCTAAGCCTGAGGGGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCATAAAAGTCTGTCCTGCTGCCTCCCTAAGCCTGAGGGGACAGT  323

seq1  GAAGAAGCTTGTACCACCCCGTCTACAAGGGCCTCTGAATAGATTTTATG  400
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAGAAGCTTGTACCA-CCCGTCTACAAGGGCCTCTGAATAGATTTTATG  372

seq1  CCACTGTTCTGTGAAAGAAGAAGAATGGCGTAACCCATTTTTATGTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTCTGTGAAAGAAGAAGAATGGCGTAACCCATTTTTATGTTTCC  422

seq1  TTTCTTTGCTAAGTTTCAATCCACAAACAAAAGATTCTTTTGGTAGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGCTAAGTTTCAATCCACAAACAAAAGATTCTTTTGGTAGGAGC  472

seq1  GGGCTATTTTCCATTGCTGCTGCTACTCTTCCCTAAGCTTTTTAATTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATTTTCCATTGCTGCTGCTACTCTTCCCTAAGCTTTTTAATTGTC  522

seq1  AGATATACTCAGTTGACCCCATATTGATTAGCCCAATCTTTCCTGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATACTCAGTTGACCCCATATTGATTAGCCCAATCTTTCCTGAAGAA  572

seq1  AAATTGATTAGAATATAAGGATCCTAGTTTTCGTAAGAACACACCGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTAGAATATAAGGATCCTAGTTTTCGTAAGAACACACCGAACC  622

seq1  TTCTTTCTAGGTTTAGGAACTCCAGTCTCCCTTCACCTCTCAGCATGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTAGGTTTAGGAACTCCAGTCTCCCTTCACCTCTCAGCATGTAC  672

seq1  CCAGTGAACTTCAATATTATGAAACCTGTGAATGGGTATCCGCAGCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAACTTCAATATTATGAAACCTGTGAATGGGTATCCGCAGCTCTT  722

seq1  CCCTTGTCTGAGTTGCTTGCAAGTATCTGACAGGCACACATTTTGTACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCTGAGTTGCTTGCAAGTATCTGACAGGCACACATTTTGTACGG  772

seq1  TGGAATCATCTCCTAATAACTCTTCCCTGAAGTGTCTTTCATGCTTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCATCTCCTAATAACTCTTCCCTGAAGTGTCTTTCATGCTTTGAT  822

seq1  CATCTAATAAAATGTGATATTCCTCTAGGTTCCATCCTGGTGGCTCACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATAAAATGTGATATTCCTCTAGGTTCCATCCTGGTGGCTCACTG  872

seq1  TCACTTTATGGACTTGCTCCTACAGAACACATCTCTTCAAGGCTTCTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTATGGACTTGCTCCTACAGAACACATCTCTTCAAGGCTTCTGCT  922

seq1  TGCCTCCAAACATGAGTGAGTGCACTTCCTGCTTCACTACCACTCTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAAACATGAGTGAGTGCACTTCCTGCTTCACTACCACTCTAAAA  972

seq1  ATATCTCACATGGTTTCAAACTCTATACGTACAGAGCAGAAGTAACTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACATGGTTTCAAACTCTATACGTACAGAGCAGAAGTAACTGTT  1022

seq1  TTGCTCGCTGAAATGAATTC  1070
      ||||||||||||||||||||
seq2  TTGCTCGCTGAAATGAATTC  1042