BAC Information

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BAC

Clone NameB6Ng01-049E23
Chromosome5 (Build37)
Map Location 50,873,899 - 50,875,023
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049E23.bB6Ng01-049E23.g
ACCDH873612DH873613
length1,2351,118
definitionDH873612|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E23, 5' end.DH873613|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaacctcataaacaatttcagccaagtaactagatataaaat
taactctaacaaatcagtggccttctctacacaaaggataaaaaaaatct
gagaaagaaattatggaaataatacccttttttataatcataaataatat
aaaatattttggtgtgactctgactaagcaagtaagagatctgtatgata
aaaacttcaagtccctgaagaaagaaatcaaagaaaatatcagaagatgg
aaagaactgccatgctcatggattggcatgattaatattgtaaaaatggc
catcttgctgaaagcaatctacagattcagtgcaatccccatgaaaattc
caattcaattctttatagagttagaaagagcaatttccaaattcatctgg
aataacaaaaagcccaggataacctcaagtataatcaacaataaaagaat
ttctggtggaatcaccatacctgacctcaaactgtactacagagcaattg
tgataaaacctacatagtattgcttggtacagtgtcaggtagataaatgg
aaaagcactgaagacccagaaatgaacccacagaagtatggtcacttgat
ctttaacaaaggagctaaaaccatccagtcaaacaaagacagtattttca
acaaatggtgatggctcactagcagttagtatgtggaggaatgctaatcg
atccattcttatctccttgtacagagctcaagtccaagtggatcaaagac
ctccacataaaaccagagacactgaaacttatagaggagaaagtggagaa
gagcattgaacatatgggcacagggggtaaatttcttgaacagaacacca
tgtcttgtactgtatatgagaattgacaatgggacctcataaattgcaaa
cttctataagcaaaggacaccatcaatagacaaaaggcatcacaggaggg
gaaatatctttacattcttcatctgatagaggctatactcagtatataca
gactcagaagatacacttcggagaaccaataaccttataaatactgatca
agactgagtaaaatctgcctttggtattcttagtattatcttaaaaatgt
tcttaagatttgtgtatattaaactactcaaccacgtattattaccatcg
agaatattacacctcggcaatctatagaggtagactggagccattggacc
tctccaaatggggtgcctgctcatcacagacagat
gaattctaaatatttccctctgtttcacatgaaatccaactaccttgcat
tcttaatttgactagggaaagggaaagctagccaagtttgtattttaagt
gaacaaattatatttttcttaagggcaaaataagttgggctattctttgc
tttgtagatttagccagggaagtccaaaatttcactgacaggattaactc
ataaaatctttgatcatattttcctttctgctatgctgtgacaactttgc
tctggcttctgacttcaataatttctacagctggaaaaatcagacattct
ggcaaaacaatcaccaaaagctctgtgatcaaatatggcagccactggtc
tcctgttggcttattaaccaatgaatcaaggcactagctactaatccctg
gacatacatgacgataggagagacatgactcctgtaaattgccttctgac
ctccacatgtgtgtggtaattcatatatacacaaacacacacatgtccta
caacaatacatatatcctacagcgctaaataaataaataatttaaaacat
taaaaagagctgaaccacttgagagaggttagagatgtactataaggaaa
aatgactaagtataatgaaatggaaaaaaaaacatagaatacatagattt
tcatattaattatatatttaattacagtgaaaatgatgtggatctacagg
gttatataaagtatattactaaaattagttccactcacttcttttgtact
ttagaaatgtgacttctagaatatttaagtaacaagcaaactcccatatt
taaccctcatcatgtgttcatttagccagtgcagaaatggagagaattct
gtgataggcttcctttatctggagcacataccttcagatattccatatct
ccaaagtagtaacatacaaaagtttgtagcgatttcactagcttctgaga
aatttttttctgtgtcactcacatagcacaatgaagtttcccttctggaa
agatgtttcacatgaacttccacatgccggtgatataacaaatgtcctac
ctcacagatggaacaccgagaacgatgaataatccattacatctatgtct
gggcttgcgaatatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50873899_50875023
seq2: B6Ng01-049E23.g_68_1185 (reverse)

seq1  TCTCATTATTCGCCAAGCCAGACATAGATGTAATGATTTATTTCATCTGT  50
      ||||| ||||||| |  ||||||||||||||||||  ||| |||||| ||
seq2  TCTCA-TATTCGCAAGCCCAGACATAGATGTAATGGATTA-TTCATC-GT  47

seq1  TCTCGGTGTTCCATCTGTGA-GTA-GACATTTGTTTATATCA-CTGCATG  97
      |||||||||||||||||||| ||| |||||||| |||||||| | |||||
seq2  TCTCGGTGTTCCATCTGTGAGGTAGGACATTTG-TTATATCACCGGCATG  96

seq1  T-GAAGTTCATGTGAAACATCCTTTCCAGAGTGAAAACTTCATTGTGCTA  146
      | |||||||||||||||||| |||||||||  | ||||||||||||||||
seq2  TGGAAGTTCATGTGAAACAT-CTTTCCAGAAGGGAAACTTCATTGTGCTA  145

seq1  TGTGAGTTGACACAAGAAAGACATTTTCTTCAGAAGCTAGTGAAATCGCT  196
      |||||| |||||| ||||| | ||||   |||||||||||||||||||||
seq2  TGTGAG-TGACAC-AGAAAAAAATTT--CTCAGAAGCTAGTGAAATCGCT  191

seq1  ACAAACCTTTTGTTATGTTACTACCTTTGGAGATATGGAATATCTGAAGG  246
      ||||| |||||| |||||||||| ||||||||||||||||||||||||||
seq2  ACAAA-CTTTTG-TATGTTACTA-CTTTGGAGATATGGAATATCTGAAGG  238

seq1  TATGTGCTCCAGATAAAGGAAGCCTATCACAGAATTCTCTCCATTTCTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTCCAGATAAAGGAAGCCTATCACAGAATTCTCTCCATTTCTGC  288

seq1  ACTGGCT-AATGAACACATGATGAGGGTTAAATATGGGAGTTTGCTTGTT  345
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTAAATGAACACATGATGAGGGTTAAATATGGGAGTTTGCTTGTT  338

seq1  ACTTAAATATTCTAGAAGTCACATTTCTAAAGTACAAAAGAAGTGAGTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATATTCTAGAAGTCACATTTCTAAAGTACAAAAGAAGTGAGTGG  388

seq1  AACTAATTTTAGTAATATACTTTATATAACCCTGTAGATCCACATCATTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTTTAGTAATATACTTTATATAACCCTGTAGATCCACATCATTT  438

seq1  TCACTGTAATTAAATATATAATTAATATGAAAATCTATGTATTCTATGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTAATTAAATATATAATTAATATGAAAATCTATGTATTCTATGTT  488

seq1  TTTTTTTCCATTTCATTATACTTAGTCATTTTTCCTTATAGTACATCTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCATTTCATTATACTTAGTCATTTTTCCTTATAGTACATCTCT  538

seq1  AACCTCTCTCAAGTGGTTCAGCTCTTTTTAATGTTTTAAATTATTTATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCTCAAGTGGTTCAGCTCTTTTTAATGTTTTAAATTATTTATTT  588

seq1  ATTTAGCGCTGTAGGATATATGTATTGTTGTAGGACATGTGTGTGTTTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCGCTGTAGGATATATGTATTGTTGTAGGACATGTGTGTGTTTGT  638

seq1  GTATATATGAATTACCACACACATGTGGAGGTCAGAAGGCAATTTACAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGAATTACCACACACATGTGGAGGTCAGAAGGCAATTTACAGG  688

seq1  AGTCATGTCTCTCCTATCGTCATGTATGTCCAGGGATTAGTAGCTAGTGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTCTCTCCTATCGTCATGTATGTCCAGGGATTAGTAGCTAGTGC  738

seq1  CTTGATTCATTGGTTAATAAGCCAACAGGAGACCAGTGGCTGCCATATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTCATTGGTTAATAAGCCAACAGGAGACCAGTGGCTGCCATATTT  788

seq1  GATCACAGAGCTTTTGGTGATTGTTTTGCCAGAATGTCTGATTTTTCCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGAGCTTTTGGTGATTGTTTTGCCAGAATGTCTGATTTTTCCAG  838

seq1  CTGTAGAAATTATTGAAGTCAGAAGCCAGAGCAAAGTTGTCACAGCATAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAATTATTGAAGTCAGAAGCCAGAGCAAAGTTGTCACAGCATAG  888

seq1  CAGAAAGGAAAATATGATCAAAGATTTTATGAGTTAATCCTGTCAGTGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGAAAATATGATCAAAGATTTTATGAGTTAATCCTGTCAGTGAA  938

seq1  ATTTTGGACTTCCCTGGCTAAATCTACAAAGCAAAGAATAGCCCAACTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGACTTCCCTGGCTAAATCTACAAAGCAAAGAATAGCCCAACTTA  988

seq1  TTTTGCCCTTAAGAAAAATATAATTTGTTCACTTAAAATACAAACTTGGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCTTAAGAAAAATATAATTTGTTCACTTAAAATACAAACTTGGC  1038

seq1  TAGCTTTCCCTTTCCCTAGTCAAATTAAGAATGCAAGGTAGTTGGATTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTCCCTTTCCCTAGTCAAATTAAGAATGCAAGGTAGTTGGATTTC  1088

seq1  ATGTGAAACAGAGGGAAATATTTAGAATTC  1125
      ||||||||||||||||||||||||||||||
seq2  ATGTGAAACAGAGGGAAATATTTAGAATTC  1118